Clone GH19563 Report

Search the DGRC for GH19563

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:195
Well:63
Vector:pOT2
Associated Gene/TranscriptCG11791-RA
Protein status:GH19563.pep: gold
Preliminary Size:1846
Sequenced Size:1831

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11791 2001-01-01 Release 2 assignment
CG11791 2001-07-04 Blastp of sequenced clone
CG11791 2003-01-01 Sim4 clustering to Release 3
CG11791 2008-04-29 Release 5.5 accounting
CG11791 2008-08-15 Release 5.9 accounting
CG11791 2008-12-18 5.12 accounting

Clone Sequence Records

GH19563.complete Sequence

1831 bp (1831 high quality bases) assembled on 2001-07-04

GenBank Submission: AY059446

> GH19563.complete
CCGAACCGAACTGAAGTCCAAGTCGAATCTAATGTGCGTACTTACGTGTA
GAACAGTTCAAGAAAATGTGCAGACATTCAACGGTCGCATTTGTGTGGAT
GTGTGGTTGTAGTGAAGAGTGCCAGCATTAATCGCATTTTTCCCCTGCAC
GAGCACCACGACTAGAAAATACTCGACACGTCTGTCTGTTTTTCTGCTTT
ATTGCTTCTACGCTATTCTGCTTTTCCGTTTCGGTTTTCCTCCGCTTGGC
CTAGTGAAAAACAACAAATTTGATTATATTGTGTAAGTTATGTCTAGCAT
TGAAAAGATGAAAAGTGTCATTCCTATAAATACACCACCACCTCGGGAAA
GGCACTCGCAATAGAGAAACTGGCCAAAACCCAACAACAAACATAACAAA
CAAAGGAACCGCTGAATATAACCAAACTTCGGAGTAGGGGCTGAGCTAAA
AAGTATAGTGCGCAGCCATCATGACTAACTCACCACCCAAAACGCCAGCC
CAATTACAGAAAATCGATATTCTAGTCGCGCTGTAACGCTGCGTAGCTGC
TAAATACACAGCTCCCTACCTGCAAACAACCCGAATACAAAAAAAAAAAA
AAGAAAACTACGAATAACAAAACAGTCAGGCGAGGCATTAGTATACCGAA
AAGCGAAAACCACTTCCGCCAATGGTCGAAATCGCCGTCGCCATCTCGAC
ATTTAGCTAGCCATATAGCAAATGTCTTTACATATCATACCGATATAATA
GAAACCATCTGTGATACGCGTGTACCTTAAAAATGAACTAACTTTGCACC
GATCGAGGGTATCACTGGGAAATTAACGATGCGTCTTGTCCGCAGTAAAT
GTTGTCAACGTGATGTTTCTGTAACCGACTATCTGAACACCCCGCATCCG
CACCAGCACCATCCATCGTCCACCGACGTCCAGCACACCAAAAACATATT
TACACGCTACTGGGACGACCACATAAGAATGAAGGAATCGAGCGAGGGCA
AAACCAGGGCCAAGGCCCCATCCGCTGCCGCATCCGCATCCACCACACCA
TCGTCATCTTCAGCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAG
GACCAGTAATGCACCAGCTGTTTGCGACGCCAACGGGAACGGGAATGGGT
GCTCCATCCAAACGGAGTGGACATTCCCCCCAAAGGCGCCCACACCGCAC
ATCTACAATTGCCTGAGTCCGGACATGATGGCCTCAAGTGATAAGAGCAG
CTTTAAGGGATTTCGCAAGCAATTCAGTGGACGGTTCAAGCGCCTAGTTA
CTCGAAAAGTGGAACACACTCCAGTGATACCTCCAGAATTGAAGCCGCAA
CTAAAAACAATATACGTTTACTAACTTAAGATGTAACGACAATTGCAAGC
ACAAGTGTTTTCCCCACTATGTACGTATGCACCTCATCGGTTGGCGTATA
CATATGTGTATGTAAATGGCAGGAAACATTAGTGATAGGAAAAGCAAGAT
AAACTAAGTAATCATAATACCATTCTGATTGACAATTTTAAGTATTCAGC
GTATTCGTGCGTATTGTTAGGCTCAATAAAAAAACGAACATTGCAAAGAC
AGACGAGGTTTAAAATGAATTGGAACAAAAGTCACGGGGTTCATGAAATA
CATACATATCGAGAAAGAACATAACATAAATGTTCAAATATCTGCTGGTA
GTACCGATACGAATCTATGTATTTGCTTCTTTTTCAAATAAGTTAAAGGA
ACCTACTATCCTACCTATACCTACATGTTCATTAATTACGATTAAAGAAA
TAGTTTAATTACCAAAAAAAAAAAAAAAAAA

GH19563.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-RA 2032 CG11791-RA 200..2015 1..1816 9080 100 Plus
CG11791.c 1595 CG11791.c 69..1595 287..1813 7635 100 Plus
CG11791.b 1585 CG11791.b 70..1585 298..1813 7580 100 Plus
CG11791.b 1585 CG11791.b 37..69 1..33 165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20873520..20874736 1..1222 5940 99.3 Plus
chr3R 27901430 chr3R 20875653..20876245 1221..1813 2965 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25050336..25051557 1..1222 6110 100 Plus
3R 32079331 3R 25052482..25053077 1221..1816 2980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24791167..24792388 1..1222 6110 100 Plus
3R 31820162 3R 24793313..24793908 1221..1816 2980 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:32:08 has no hits.

GH19563.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:33:07 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20873520..20874735 1..1221 99 -> Plus
chr3R 20875654..20876245 1222..1813 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:18 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 829..1374 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:14 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 829..1374 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:23 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 829..1374 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:13 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 829..1374 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:20:30 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..546 829..1374 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:38 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..1813 1..1813 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:14 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..1813 1..1813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:23 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 94..1906 1..1813 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:13 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 1..1813 1..1813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:30 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
CG11791-RA 94..1906 1..1813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:07 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25050336..25051556 1..1221 100 -> Plus
3R 25052483..25053074 1222..1813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:07 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25050336..25051556 1..1221 100 -> Plus
3R 25052483..25053074 1222..1813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:07 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25050336..25051556 1..1221 100 -> Plus
3R 25052483..25053074 1222..1813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:23 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20876058..20877278 1..1221 100 -> Plus
arm_3R 20878205..20878796 1222..1813 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:36:00 Download gff for GH19563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24791167..24792387 1..1221 100 -> Plus
3R 24793314..24793905 1222..1813 100   Plus

GH19563.pep Sequence

Translation from 828 to 1373

> GH19563.pep
MRLVRSKCCQRDVSVTDYLNTPHPHQHHPSSTDVQHTKNIFTRYWDDHIR
MKESSEGKTRAKAPSAAASASTTPSSSSAPAKQTQSVTFVRTSNAPAVCD
ANGNGNGCSIQTEWTFPPKAPTPHIYNCLSPDMMASSDKSSFKGFRKQFS
GRFKRLVTRKVEHTPVIPPELKPQLKTIYVY*

GH19563.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17882-PA 174 GF17882-PA 1..174 1..181 638 70.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11352-PA 184 GG11352-PA 1..184 1..181 797 89.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18037-PA 146 GH18037-PA 54..146 87..181 317 65.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 181 CG11791-PA 1..181 1..181 973 100 Plus
CG11791-PD 131 CG11791-PD 1..131 51..181 685 100 Plus
CG11791-PC 131 CG11791-PC 1..131 51..181 685 100 Plus
CG11791-PB 131 CG11791-PB 1..131 51..181 685 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23822-PA 149 GI23822-PA 1..149 1..181 315 40.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21946-PA 111 GL21946-PA 15..111 81..181 361 66 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27317-PA 111 GA27317-PA 15..111 81..181 361 66 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17792-PA 181 GM17792-PA 1..181 1..181 950 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21163-PA 183 GD21163-PA 1..183 1..181 937 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23614-PA 148 GJ23614-PA 1..148 1..181 302 44.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13882-PA 118 GK13882-PA 26..118 82..181 323 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23548-PA 201 GE23548-PA 1..201 1..181 690 79.1 Plus

GH19563.hyp Sequence

Translation from 828 to 1373

> GH19563.hyp
MRLVRSKCCQRDVSVTDYLNTPHPHQHHPSSTDVQHTKNIFTRYWDDHIR
MKESSEGKTRAKAPSAAASASTTPSSSSAPAKQTQSVTFVRTSNAPAVCD
ANGNGNGCSIQTEWTFPPKAPTPHIYNCLSPDMMASSDKSSFKGFRKQFS
GRFKRLVTRKVEHTPVIPPELKPQLKTIYVY*

GH19563.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11791-PA 181 CG11791-PA 1..181 1..181 973 100 Plus
CG11791-PD 131 CG11791-PD 1..131 51..181 685 100 Plus
CG11791-PC 131 CG11791-PC 1..131 51..181 685 100 Plus
CG11791-PB 131 CG11791-PB 1..131 51..181 685 100 Plus