BDGP Sequence Production Resources |
Search the DGRC for GH19566
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 195 |
Well: | 66 |
Vector: | pOT2 |
Associated Gene/Transcript | nSyb-RH |
Protein status: | GH19566.pep: gold |
Preliminary Size: | 1405 |
Sequenced Size: | 1285 |
Gene | Date | Evidence |
---|---|---|
n-syb-RB | 2009-06-22 | Replacement based on scoring |
1285 bp assembled on 2009-08-13
GenBank Submission: BT099571.1
> GH19566.complete AAAACGTCCAGTTCCAGCGCTGAGCCAGAAAATTCCTGCGAAAGGCTGTC GTGGCAAGTGTTACCCGCACACATACACATCATCCAGATCCAGCCAATCC CCCCGTGGAGTGGAGTGAATTTTCATTGACGACGGGGCGAAAAAGCTCTG GCGGAAGAGCGACAGAGAGAGAGAGAAACAGAGAGAGAGAGAGAGAAGCG GCACTGAGAGCGCAACCCTCTAGAACAAAAACAACGAAACAGAGTTCAGC TGCACCACCACCCACTACCTACACCACCAACGCCACCACCGCCCACTGAC CATCCCACATCCCGACCTGCGCCAGTGGAAGACAGTGAAAGAGGCCAAGT GCATCGTGCATAGAGTACCTTCATCCTAATCATCGACAGCCGAATTCGCT GAGGCCACCAGAGCACCACCAGCCAAACCACAGAAGCAACCACACAGCCA CCAGAGCCATAGCCCAGAAGCCGAGTTAAAGGTCAAAGTTTTTGGGGGTC TGAGATGGGAAAGAAAGACAAGAACAAGGAACAGGCGGACGCTGCACCAG CTGGCGATGCACCACCCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGAT GGCGAGATTGTGGGCGGACCACACAATCCGCAGCAGATCGCGGCACAGAA GCGTCTGCAGCAGACGCAGGCGCAGGTCGATGAGGTCGTGGACATCATGC GCACGAACGTGGAGAAGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTG GACGACCGTGCCGATGCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCA GGCGGGCAAGCTCAAGAGGAAATTCTGGCTTCAGAACTTAAAGATGATGA TCATCATGGGCGTGATTGGCCTGGTTGTCGTGGGCATTATTGCAAAGAAA GACGAAGAATAATCACACAGAAAGCTTCAGCTTTGTACAATTTTATTAAC CATAAGCAAATCAATTTACCCAATATAACACTTTGTGTGTGAGATAAACT TGGACTCATAGGCGGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGT ACATGCAGCCACCGCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCA TCGCTGGTGGATGCGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATC GGCAGGAGCTGGCGATCACGGCGGCGTGTAAGCAATCCCGCTGCCAGGAC GAAAGTTTCTCGATTAGTGTGCTCCTTCAGCGGGCGAAAACAAAGCAGAG AAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1636414..1636868 | 460..9 | 2180 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 1631789..1632046 | 1255..992 | 1180 | 97.3 | Minus |
chr3L | 24539361 | chr3L | 1635128..1635280 | 686..534 | 765 | 100 | Minus |
chr3L | 24539361 | chr3L | 1634897..1635057 | 843..683 | 760 | 98.1 | Minus |
chr3L | 24539361 | chr3L | 1633297..1633407 | 999..889 | 510 | 97.3 | Minus |
chr3L | 24539361 | chr3L | 1635532..1635605 | 534..461 | 370 | 100 | Minus |
chr2R | 21145070 | chr2R | 6138435..6138646 | 866..655 | 310 | 76.4 | Minus |
chr3L | 24539361 | chr3L | 1634782..1634835 | 895..842 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1636818..1637269 | 460..9 | 2260 | 100 | Minus |
3L | 28110227 | 3L | 1632184..1632456 | 1264..992 | 1350 | 99.6 | Minus |
3L | 28110227 | 3L | 1635301..1635461 | 843..683 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 686..534 | 765 | 100 | Minus |
3L | 28110227 | 3L | 1633703..1633813 | 999..889 | 510 | 97.3 | Minus |
3L | 28110227 | 3L | 1635936..1636009 | 534..461 | 370 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 866..655 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635186..1635239 | 895..842 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1636818..1637269 | 460..9 | 2260 | 100 | Minus |
3L | 28103327 | 3L | 1632184..1632456 | 1264..992 | 1350 | 99.6 | Minus |
3L | 28103327 | 3L | 1635301..1635461 | 843..683 | 805 | 100 | Minus |
3L | 28103327 | 3L | 1635532..1635684 | 686..534 | 765 | 100 | Minus |
3L | 28103327 | 3L | 1633703..1633813 | 999..889 | 510 | 97.2 | Minus |
3L | 28103327 | 3L | 1635936..1636009 | 534..461 | 370 | 100 | Minus |
2R | 25260384 | 2R | 10252157..10252318 | 816..655 | 285 | 78.3 | Minus |
3L | 28103327 | 3L | 1635186..1635239 | 895..842 | 270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1631789..1632044 | 994..1255 | 97 | <- | Minus |
chr3L | 1633303..1633400 | 896..993 | 100 | <- | Minus |
chr3L | 1634782..1634833 | 844..895 | 100 | <- | Minus |
chr3L | 1634897..1635055 | 685..843 | 98 | <- | Minus |
chr3L | 1635130..1635280 | 534..684 | 100 | <- | Minus |
chr3L | 1635533..1635605 | 461..533 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RD | 1..666 | 505..1181 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RG | 1..396 | 505..900 | 99 | == | Plus |
n-syb-RG | 397..579 | 999..1181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RH | 1..408 | 505..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nSyb-RH | 1..408 | 505..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RD | 1..1242 | 5..1255 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RH | 38..1292 | 1..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
n-syb-RH | 23..1277 | 1..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nSyb-RH | 23..1277 | 1..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1635301..1635459 | 685..843 | 100 | <- | Minus |
3L | 1635534..1635684 | 534..684 | 100 | <- | Minus |
3L | 1635937..1636009 | 461..533 | 100 | <- | Minus |
3L | 1632193..1632454 | 994..1255 | 100 | <- | Minus |
3L | 1633709..1633806 | 896..993 | 100 | <- | Minus |
3L | 1635186..1635237 | 844..895 | 100 | <- | Minus |
3L | 1636818..1637269 | 9..460 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1635301..1635459 | 685..843 | 100 | <- | Minus |
3L | 1635534..1635684 | 534..684 | 100 | <- | Minus |
3L | 1635937..1636009 | 461..533 | 100 | <- | Minus |
3L | 1632193..1632454 | 994..1255 | 100 | <- | Minus |
3L | 1633709..1633806 | 896..993 | 100 | <- | Minus |
3L | 1635186..1635237 | 844..895 | 100 | <- | Minus |
3L | 1636818..1637269 | 9..460 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1635301..1635459 | 685..843 | 100 | <- | Minus |
3L | 1635534..1635684 | 534..684 | 100 | <- | Minus |
3L | 1635937..1636009 | 461..533 | 100 | <- | Minus |
3L | 1632193..1632454 | 994..1255 | 100 | <- | Minus |
3L | 1633709..1633806 | 896..993 | 100 | <- | Minus |
3L | 1635186..1635237 | 844..895 | 100 | <- | Minus |
3L | 1636818..1637269 | 9..460 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1632193..1632454 | 994..1255 | 100 | <- | Minus |
arm_3L | 1633709..1633806 | 896..993 | 100 | <- | Minus |
arm_3L | 1635186..1635237 | 844..895 | 100 | <- | Minus |
arm_3L | 1635301..1635459 | 685..843 | 100 | <- | Minus |
arm_3L | 1635534..1635684 | 534..684 | 100 | <- | Minus |
arm_3L | 1635937..1636009 | 461..533 | 100 | <- | Minus |
arm_3L | 1636818..1637269 | 9..460 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1632193..1632454 | 994..1255 | 100 | <- | Minus |
3L | 1633709..1633806 | 896..993 | 100 | <- | Minus |
3L | 1635186..1635237 | 844..895 | 100 | <- | Minus |
3L | 1635301..1635459 | 685..843 | 100 | <- | Minus |
3L | 1635534..1635684 | 534..684 | 100 | <- | Minus |
3L | 1635937..1636009 | 461..533 | 100 | <- | Minus |
3L | 1636818..1637269 | 9..460 | 100 | Minus |
Translation from 504 to 911
> GH19566.hyp MGKKDKNKEQADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKR LQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQA GKLKRKFWLQNLKMMIIMGVIGLVVVGIIAKKDEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nSyb-PI | 135 | CG17248-PI | 1..135 | 1..135 | 682 | 100 | Plus |
nSyb-PH | 135 | CG17248-PH | 1..135 | 1..135 | 682 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 1..132 | 1..132 | 661 | 99.2 | Plus |
nSyb-PE | 192 | CG17248-PE | 1..132 | 1..132 | 661 | 99.2 | Plus |
nSyb-PK | 125 | CG17248-PK | 2..121 | 11..130 | 603 | 100 | Plus |
Translation from 504 to 911
> GH19566.pep MGKKDKNKEQADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKR LQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQA GKLKRKFWLQNLKMMIIMGVIGLVVVGIIAKKDEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24019-PA | 190 | GF24019-PA | 1..132 | 1..132 | 658 | 98.5 | Plus |
Dana\GF12131-PA | 132 | GF12131-PA | 35..126 | 38..129 | 330 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14581-PA | 217 | GG14581-PA | 1..132 | 1..132 | 661 | 98.5 | Plus |
Dere\GG25222-PA | 153 | GG25222-PA | 18..127 | 15..129 | 324 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15523-PA | 190 | GH15523-PA | 1..132 | 1..132 | 613 | 92.4 | Plus |
Dgri\GH20114-PA | 126 | GH20114-PA | 6..110 | 23..119 | 304 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nSyb-PI | 135 | CG17248-PI | 1..135 | 1..135 | 682 | 100 | Plus |
nSyb-PH | 135 | CG17248-PH | 1..135 | 1..135 | 682 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 1..132 | 1..132 | 661 | 99.2 | Plus |
nSyb-PE | 192 | CG17248-PE | 1..132 | 1..132 | 661 | 99.2 | Plus |
nSyb-PF | 183 | CG17248-PF | 2..123 | 11..132 | 608 | 99.2 | Plus |
nSyb-PA | 183 | CG17248-PA | 2..123 | 11..132 | 608 | 99.2 | Plus |
nSyb-PJ | 206 | CG17248-PJ | 2..122 | 11..131 | 608 | 100 | Plus |
nSyb-PK | 125 | CG17248-PK | 2..121 | 11..130 | 603 | 100 | Plus |
Syb-PB | 132 | CG12210-PB | 23..126 | 20..129 | 324 | 64.5 | Plus |
Syb-PC | 152 | CG12210-PC | 23..126 | 20..129 | 324 | 64.5 | Plus |
Syb-PD | 109 | CG12210-PD | 11..103 | 37..129 | 320 | 71 | Plus |
Syb-PE | 129 | CG12210-PE | 11..103 | 37..129 | 320 | 71 | Plus |
Syb-PA | 129 | CG12210-PA | 11..103 | 37..129 | 320 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16800-PA | 192 | GI16800-PA | 1..132 | 1..132 | 554 | 93.2 | Plus |
Dmoj\GI20208-PA | 152 | GI20208-PA | 18..117 | 15..119 | 324 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20732-PA | 189 | GL20732-PA | 1..131 | 1..132 | 634 | 97 | Plus |
Dper\GL10482-PA | 131 | GL10482-PA | 44..125 | 48..129 | 311 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28300-PA | 189 | GA28300-PA | 1..131 | 1..132 | 636 | 97 | Plus |
Dpse\GA11480-PA | 131 | GA11480-PA | 44..125 | 48..129 | 311 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14195-PA | 221 | GM14195-PA | 1..132 | 1..132 | 666 | 99.2 | Plus |
Dsec\GM20541-PA | 152 | GM20541-PA | 18..126 | 15..129 | 333 | 62.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17610-PA | 213 | GD17610-PA | 1..132 | 1..132 | 666 | 99.2 | Plus |
Dsim\GD25998-PA | 152 | GD25998-PA | 18..126 | 15..129 | 333 | 62.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12544-PA | 189 | GJ12544-PA | 1..132 | 1..132 | 551 | 91.7 | Plus |
Dvir\GJ20156-PA | 152 | GJ20156-PA | 6..117 | 23..119 | 310 | 61.6 | Plus |