Clone GH19589 Report

Search the DGRC for GH19589

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:195
Well:89
Vector:pOT2
Associated Gene/TranscriptGlyS-RA
Protein status:GH19589.pep: gold
Sequenced Size:2582

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6904 2009-10-22 Manual selection by Sue Celniker

Clone Sequence Records

GH19589.complete Sequence

2582 bp assembled on 2010-04-28

GenBank Submission: BT124863.1

> GH19589.complete
CCTCAACGGAGGGGTACAGCTATAGATCAGCGGCGTCTAGATTATAGCAT
CCCGTTCCCAACATATCAAGGAGATGCGCAGACAGCAGTCCTACCGTTTC
GAGGACAACGAGTCCACGTCTTACGCTCTGAGGATGAATCGTCGCTTTTC
GAGAGTGGAGTCCGGGGCGGACCTTAAGGATTATTTCGATCGGGGTGATA
TCGCTTCCCGGGAGAACCGCTGGAACTTCGAGGTGGCATGGGAGGTGGCC
AACAAGGTGGGCGGTATTTACACGGTGATCCGGTCGAAGGCATATGTCTC
CACCGAGGAGATGGGCGAGCAGTTGTGTATGATGGGTCCCTACAAGGAGC
ACTGTGCCCGCACCGAGATGGAGGAGATGGAGTTCCCCAGGGGAAACCCC
CTACTAGACGCTGTCAACTCATTGCGCTCGCGAGGCTATAAAATCCACAC
CGGTCGCTGGCTGGTGGACGGAAATCCTCAATTAATCCTGTTCGATATTG
GATCAGCCGCTTGGAAGCTGGATCAGTTCAAATCGGAGATGTGGGAGAAG
TGCCATATTGGAATACCTCATTTGGATATCGAGACGAACGATGCCATTAT
CCTTGGCTTTATGATTGCCGAGTTCCTGGAGGAGTTCCGCAACTTTGCCG
TGACTTATTCGCAGAACAACGAATTGAGCGCTCCGAGGATTGTCGCCCAC
TTCCACGAATGGCAAGCTGGCGTGGGTCTCATTGTCCTACGTACTCGTCT
GGTGGAGATCGCCACTGTGTTCACTACCCACGCCACATTGTTGGGTCGTT
ACTTGTGCGCCGGCAACACCGATTTCTACAACAATCTGGACAAGTTCGCC
GTGGACGAAGAGGCGGGCAAGCGCCAAATCTATCATCGTTATTGCCTGGA
GCGAGGTGCCACCCACTTGGCTCATGTGTTCACCACCGTCTCCGAGATTA
CGGGCTACGAGGCAGAGCATCTGCTCAAGCGCAAACCGGACATCATCACG
CCCAATGGACTGAACGTGAAGAAGTTCTCGGCCATCCACGAGTTCCAGAA
CTTGCACGCCGTTGCCAAGGAGAAGATCAACGAATTCGTGCGGGGTCACT
TTTACGGCCACATTGACTTTGATTTAGATAAGACCCTGTACTTCTTCATC
GCCGGTCGCTACGAGTTTGGAAACAAGGGAGCCGACATCTTCATCGAGGC
ACTGGCTCGCTTGAACGCGATGCTCAAGCACGAGAAGCCGGACACCACGG
TGGTGGCCTTTCTCATCTTCCCCACCAAGACCAACAACTTCAACGTGGAC
TCGCTGCGAGGACATGCCGTGATCAAGCAGTTGCGCGATACGATCAACAA
CGTCCAGCAGGCCGTGGGCAAGCGGATGTTCGACACTTGTCTGCAGGGCA
ACATACCCAATGCCGATGATCTGCTTCAGAAGGATGACCTCGTCAAGATC
AAGCGTTGCATGTTCGCCATGCAGCGCGATTCGATGCCGCCTGTTACCAC
GCACAATGTGGCTGATGACTGGAATGATCCGGTGCTATCCTCAATCCGTC
GTTGCCATCTGTTCAACTCGCGCCACGATCGTGTCAAGATGGTCTTCCAT
CCGGAGTTCCTCACATCCACAAATCCTCTGTTTGGAATCGACTACGAAGA
ATTTGTCCGTGGCTGCCACTTGGGTGTCTTCCCCTCATACTACGAGCCCT
GGGGTTACACTCCCGCCGAGTGTACGGTGATGGGTATCCCCAGCGTAACC
ACCAATCTGTCCGGCTTTGGCTGCTTCATGGAGGAGCACATCAGTGATCC
CAAGTCATACGGTATCTACATCGTGGATCGCCGCTATATCGGCTTGGAGA
ACAGCGTTCAGCAGCTGTCCAGCTTTATGATGGAGTTCTCCAGGCTGAAC
CGCCGCCAGCGCATTATCCAGCGTAATCGCACGGAGCGGTTGAGCGATCT
TCTGGACTGGCGCACCCTGGGCATTTACTACAGACAGGCCAGGGTTAAGG
CCCTGCAAGCTGTTTACCCAGACTATGTGGATGAATTGTCTCTCTATGGA
TCGAAGAACAACTTGATCTTCTCGCGACCGCACAGCGAACCTCCCAGTCC
TACTTCATCGCGGCACACCACTCCAGCTCCATCGGTTCACGGTTCGGATG
ACGAGGACTCCGTGGATGAGGAGACCGAACTCAAGGAATTGGGGATTAAG
TAGAGTTCTCTGCCAAATGGAAGGCCCTTATATTTGTAGCGAACAAACCA
ATTAAAATCAACACACGCGCAATATTACCATAAGTTCCAGTTGTCTTGTT
CCACCAATGTTCATCGAGATACGGGCTAAACTCTTGCCCGGATGCCTTCG
AAACTATCTACCTGCAATTGAAATGCCAGAACAAATGTTTTCACATCTAA
TCAAATTATTAATATTATGTATGCCCAGATCGCAAGCGTAAGCATTCGAG
CAGGACGAGTCCAGATTTTATTAAACGTTGTTTAGTCCATAAGGAGAACG
AGGTCTCCCCGCCCTGTCACCCAGCTTCATACCCTGCGTATCAAATAAAT
CGTTATTTAAAGTAAAAAAAAAAAAAAAAAAA

GH19589.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6904-RA 2842 CG6904-RA 123..2686 1..2564 12820 100 Plus
CG6904.b 2975 CG6904.b 256..2819 1..2564 12820 100 Plus
CG6904.a 2829 CG6904.a 364..2795 133..2564 12160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10968911..10969885 1107..133 4860 99.9 Minus
chr3R 27901430 chr3R 10967604..10968476 1975..1103 4350 99.9 Minus
chr3R 27901430 chr3R 10966488..10966939 2563..2112 2260 100 Minus
chr3R 27901430 chr3R 10967373..10967509 2112..1976 685 100 Minus
chr3R 27901430 chr3R 10969963..10970095 133..1 665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15144266..15145240 1107..133 4875 100 Minus
3R 32079331 3R 15142959..15143831 1975..1103 4350 99.9 Minus
3R 32079331 3R 15141842..15142294 2564..2112 2265 100 Minus
3R 32079331 3R 15142728..15142864 2112..1976 685 100 Minus
3R 32079331 3R 15145318..15145450 133..1 665 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14885097..14886071 1107..133 4875 100 Minus
3R 31820162 3R 14883790..14884662 1975..1103 4350 99.8 Minus
3R 31820162 3R 14882673..14883125 2564..2112 2265 100 Minus
3R 31820162 3R 14883559..14883695 2112..1976 685 100 Minus
3R 31820162 3R 14886149..14886281 133..1 665 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:41:11 has no hits.

GH19589.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:42:16 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10966488..10966939 2112..2563 100 <- Minus
chr3R 10967374..10967509 1976..2111 100 <- Minus
chr3R 10967604..10968471 1108..1975 100 <- Minus
chr3R 10968911..10969884 134..1107 99 <- Minus
chr3R 10969963..10970095 1..133 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-28 13:11:50 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 1..2130 74..2203 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:24:55 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 1..2130 74..2203 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:11 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RA 1..2130 74..2203 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:23 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RA 1..2130 74..2203 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-28 13:11:50 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 123..2685 1..2563 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:24:55 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
CG6904-RA 123..2685 1..2563 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:11 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RA 22..2584 1..2563 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:23 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
GlyS-RA 22..2584 1..2563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:16 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15141843..15142294 2112..2563 100 <- Minus
3R 15142729..15142864 1976..2111 100 <- Minus
3R 15142959..15143826 1108..1975 100 <- Minus
3R 15144266..15145239 134..1107 100 <- Minus
3R 15145318..15145450 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:16 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15141843..15142294 2112..2563 100 <- Minus
3R 15142729..15142864 1976..2111 100 <- Minus
3R 15142959..15143826 1108..1975 100 <- Minus
3R 15144266..15145239 134..1107 100 <- Minus
3R 15145318..15145450 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:16 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15141843..15142294 2112..2563 100 <- Minus
3R 15142729..15142864 1976..2111 100 <- Minus
3R 15142959..15143826 1108..1975 100 <- Minus
3R 15144266..15145239 134..1107 100 <- Minus
3R 15145318..15145450 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:11 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10967565..10968016 2112..2563 100 <- Minus
arm_3R 10968451..10968586 1976..2111 100 <- Minus
arm_3R 10968681..10969548 1108..1975 100 <- Minus
arm_3R 10969988..10970961 134..1107 100 <- Minus
arm_3R 10971040..10971172 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:57:02 Download gff for GH19589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14882674..14883125 2112..2563 100 <- Minus
3R 14883560..14883695 1976..2111 100 <- Minus
3R 14883790..14884657 1108..1975 100 <- Minus
3R 14885097..14886070 134..1107 100 <- Minus
3R 14886149..14886281 1..133 100   Minus

GH19589.pep Sequence

Translation from 73 to 2202

> GH19589.pep
MRRQQSYRFEDNESTSYALRMNRRFSRVESGADLKDYFDRGDIASRENRW
NFEVAWEVANKVGGIYTVIRSKAYVSTEEMGEQLCMMGPYKEHCARTEME
EMEFPRGNPLLDAVNSLRSRGYKIHTGRWLVDGNPQLILFDIGSAAWKLD
QFKSEMWEKCHIGIPHLDIETNDAIILGFMIAEFLEEFRNFAVTYSQNNE
LSAPRIVAHFHEWQAGVGLIVLRTRLVEIATVFTTHATLLGRYLCAGNTD
FYNNLDKFAVDEEAGKRQIYHRYCLERGATHLAHVFTTVSEITGYEAEHL
LKRKPDIITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFD
LDKTLYFFIAGRYEFGNKGADIFIEALARLNAMLKHEKPDTTVVAFLIFP
TKTNNFNVDSLRGHAVIKQLRDTINNVQQAVGKRMFDTCLQGNIPNADDL
LQKDDLVKIKRCMFAMQRDSMPPVTTHNVADDWNDPVLSSIRRCHLFNSR
HDRVKMVFHPEFLTSTNPLFGIDYEEFVRGCHLGVFPSYYEPWGYTPAEC
TVMGIPSVTTNLSGFGCFMEEHISDPKSYGIYIVDRRYIGLENSVQQLSS
FMMEFSRLNRRQRIIQRNRTERLSDLLDWRTLGIYYRQARVKALQAVYPD
YVDELSLYGSKNNLIFSRPHSEPPSPTSSRHTTPAPSVHGSDDEDSVDEE
TELKELGIK*

GH19589.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17161-PA 709 GF17161-PA 1..709 1..709 3765 97.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20891-PA 709 GG20891-PA 1..709 1..709 3853 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14560-PA 711 GH14560-PA 2..711 1..709 3512 93.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
GlyS-PA 709 CG6904-PA 1..709 1..709 3769 100 Plus
GlyS-PD 689 CG6904-PD 1..689 21..709 3667 100 Plus
GlyS-PB 689 CG6904-PB 1..689 21..709 3667 100 Plus
GlyS-PC 689 CG6904-PC 1..689 21..709 3667 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23664-PA 709 GI23664-PA 1..709 1..709 3544 95.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21689-PA 771 GL21689-PA 63..771 1..709 3606 93.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19945-PA 709 GA19945-PA 1..709 1..709 3592 93.5 Plus
Dpse\GA19945-PB 689 GA19945-PB 1..689 21..709 3515 94.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25805-PA 709 GM25805-PA 1..709 1..709 3849 99.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20381-PA 709 GD20381-PA 1..709 1..709 3853 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23225-PA 710 GJ23225-PA 2..710 1..709 3616 94.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13980-PA 709 GK13980-PA 1..709 1..709 3754 96.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26410-PA 709 GE26410-PA 1..709 1..709 3853 100 Plus

GH19589.hyp Sequence

Translation from 360 to 2489

> GH19589.hyp
MRRQQSYRFEDNESTSYALRMNRRFSRVESGADLKDYFDRGDIASRENRW
NFEVAWEVANKVGGIYTVIRSKAYVSTEEMGEQLCMMGPYKEHCARTEME
EMEFPRGNPLLDAVNSLRSRGYKIHTGRWLVDGNPQLILFDIGSAAWKLD
QFKSEMWEKCHIGIPHLDIETNDAIILGFMIAEFLEEFRNFAVTYSQNNE
LSAPRIVAHFHEWQAGVGLIVLRTRLVEIATVFTTHATLLGRYLCAGNTD
FYNNLDKFAVDEEAGKRQIYHRYCLERGATHLAHVFTTVSEITGYEAEHL
LKRKPDIITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFD
LDKTLYFFIAGRYEFGNKGADIFIEALARLNAMLKHEKPDTTVVAFLIFP
TKTNNFNVDSLRGHAVIKQLRDTINNVQQAVGKRMFDTCLQGNIPNADDL
LQKDDLVKIKRCMFAMQRDSMPPVTTHNVADDWNDPVLSSIRRCHLFNSR
HDRVKMVFHPEFLTSTNPLFGIDYEEFVRGCHLGVFPSYYEPWGYTPAEC
TVMGIPSVTTNLSGFGCFMEEHISDPKSYGIYIVDRRYIGLENSVQQLSS
FMMEFSRLNRRQRIIQRNRTERLSDLLDWRTLGIYYRQARVKALQAVYPD
YVDELSLYGSKNNLIFSRPHSEPPSPTSSRHTTPAPSVHGSDDEDSVDEE
TELKELGIK*

GH19589.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
GlyS-PA 709 CG6904-PA 1..709 1..709 3769 100 Plus
GlyS-PD 689 CG6904-PD 1..689 21..709 3667 100 Plus
GlyS-PB 689 CG6904-PB 1..689 21..709 3667 100 Plus
GlyS-PC 689 CG6904-PC 1..689 21..709 3667 100 Plus