Clone GH19593 Report

Search the DGRC for GH19593

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:195
Well:93
Vector:pOT2
Associated Gene/TranscriptCG2854-RA
Protein status:GH19593.pep: gold
Preliminary Size:1810
Sequenced Size:1641

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2854 2001-11-08 Blastp of sequenced clone
CG2854 2003-01-01 Sim4 clustering to Release 3
CG2854 2008-04-29 Release 5.5 accounting
CG2854 2008-08-15 Release 5.9 accounting
CG2854 2008-12-18 5.12 accounting

Clone Sequence Records

GH19593.complete Sequence

1641 bp (1641 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069165

> GH19593.complete
ATCACATTTTTTTTTTTTCTAATATTCAAAATTCGTACCACTTGGCAGCA
CTTAAAATGGTCACATTGCGCTTCCTGACTCCTCGCAGGATCGTCGACTA
TTGTCGTCGTCTGCTGAGCACGGACCTGGTCACGGCCCTTCGTCCGTTCT
ACCAGGCCATTCGGACGGATGGCCTGGCTCACAATCCGGCAGAGAAGCGG
GTTAACGAGGAGTCACTACGTCTGCTTTGCTCCCATCTGGAATCCCTGAC
TGGGCCGTCGGCAAGTTGTCTTCCGCCCGATGGCCATTTGGAGTTCTATA
TTCCATCGGGCTCGGATGAGTCCGGTAGTCGGGTGGTTAGTCGACTGGTT
AGGGTGCAGGTAGACCGGAGTTTATTGGATCCCAGGGCGGTGATTTGCCA
GATTCTGAGGTCATGTAAGCTGCTGCCGAAGGAAAAGGAGCAGGAACAAA
TGAAGCGGGGTCAGGAGATGGAAAAGGAGCTCGGAAAAGTGCTGAGAAAG
GAACCGGTGAGGGAAAGGGTGAGACCGCCCCAAGCGCCAGTGCAAAAGAA
TTTGAGTGCCTTAAGGGAACTCTTTAAGGATGCCAAAAGGGAGCACTCTT
TGGAAATATGGATGCGTCAGGCCCTGGCACGTTCCCAGGCCTCCGAAGTC
GCTACTCTACGCGGCAAAATCGAGGGCATTGAAGCGGCTTTGGTCCAGTT
GTTGGGCATTCGGGGAACCCGTTACGATTGTGGCTGCAACATGGAACGCT
ACCACAACTGCCTCAGCATCCTCAAGGGCTTGTCCGAGGATCCGAAGGTC
GCCGGCCAGCTGGGAGCCCTTCGCAATCGTTTTGTGGTCTTCGCACCGTA
CACTGGTATTAGCTTGGAGGGCGATGTAATGCTCTTTTCGGGCGACTCCC
CCTCGGGTTGGCTGGCCTTCCTCTCCGAGATGCGTTTGCACGAGGAGCAA
CTGAGACTGGTGCCCCTGTACGAGAAAGCCCTGTCTGCCGTGCTCCTTGG
CATACGGATTGAGAGGCGTAGGGTTCCGGAGCCGGGCTGTGAGGCGCGTG
CCTATGCGGGCAGCTTGAGGCGCGTGATCCGTGCGGTCAGTGAGCACCTG
AGGCTGGAGGATAGTGTCCAGGAGTTGCCGGCATCGCTGCAGGACCATCA
TTTGGCCATTGTGCCGGATAGTGATATACCGAAGGTTAGCCAAACCGGTC
TCTTCTTGGCCCCGGCCTCCTGCTCCGGACCCGATCTCGTGGAGTTCATA
TGCCGGAACTTGGACGTGGCCAGCGGGCGGTTCAGTCGCTATCGCAGGGA
TATCCAGGTGGAGCGGCAATTGTGGCGACAGTGCCAGGAGGAACTTGGCT
TGCAGCGACTCAGCAAGGACGACTCTGTAACGCCGGACAAGATGGTCATG
GCCATACGGCATCTGCTTCAGAGTGGCGTCAAGTCCTGTCGCGGTCTCAG
TCTGCACATCACGAACTATTGGTCAGTGCCCACCGATGGCATCGTCTGCA
TTCCCTGGGACTTTATGTCACGCGAGAAGTAGCGCATCCTGCTGGGTTGT
GTCACTTAAATTGCATAAATTGGTAGATAAATTGAAAGGTTTGGGCTTAC
GCTTTTAAATGTTCAACTCGAAAAAAAAAAAAAAAAAAAAA

GH19593.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854.b 2125 CG2854.b 96..1716 1..1621 8105 100 Plus
CG2854-RA 1811 CG2854-RA 96..1716 1..1621 8105 100 Plus
CG2854.a 1637 CG2854.a 24..1637 1..1620 7985 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2221703..2222865 458..1620 5695 99.3 Plus
chrX 22417052 chrX 2221084..2221533 10..459 2190 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2327779..2328942 458..1621 5820 100 Plus
X 23542271 X 2327151..2327609 1..459 2295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2335877..2337040 458..1621 5820 100 Plus
X 23527363 X 2335249..2335707 1..459 2295 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:44:20 has no hits.

GH19593.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:45:06 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2221093..2221532 19..458 99 -> Plus
chrX 2221704..2222865 459..1620 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:22 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1..1476 57..1532 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:08 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1..1476 57..1532 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:19 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1..1476 57..1532 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:02 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1..1476 57..1532 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:13:50 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1..1476 57..1532 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:08 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 42..1643 19..1620 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:08 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 42..1643 19..1620 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:19 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 42..1643 19..1620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:02 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 42..1643 19..1620 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:13:50 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 42..1643 19..1620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:06 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
X 2327169..2327608 19..458 100 -> Plus
X 2327780..2328941 459..1620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:06 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
X 2327169..2327608 19..458 100 -> Plus
X 2327780..2328941 459..1620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:06 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
X 2327169..2327608 19..458 100 -> Plus
X 2327780..2328941 459..1620 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:19 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2221202..2221641 19..458 100 -> Plus
arm_X 2221813..2222974 459..1620 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:05 Download gff for GH19593.complete
Subject Subject Range Query Range Percent Splice Strand
X 2335267..2335706 19..458 100 -> Plus
X 2335878..2337039 459..1620 100   Plus

GH19593.hyp Sequence

Translation from 20 to 1531

> GH19593.hyp
NIQNSYHLAALKMVTLRFLTPRRIVDYCRRLLSTDLVTALRPFYQAIRTD
GLAHNPAEKRVNEESLRLLCSHLESLTGPSASCLPPDGHLEFYIPSGSDE
SGSRVVSRLVRVQVDRSLLDPRAVICQILRSCKLLPKEKEQEQMKRGQEM
EKELGKVLRKEPVRERVRPPQAPVQKNLSALRELFKDAKREHSLEIWMRQ
ALARSQASEVATLRGKIEGIEAALVQLLGIRGTRYDCGCNMERYHNCLSI
LKGLSEDPKVAGQLGALRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAF
LSEMRLHEEQLRLVPLYEKALSAVLLGIRIERRRVPEPGCEARAYAGSLR
RVIRAVSEHLRLEDSVQELPASLQDHHLAIVPDSDIPKVSQTGLFLAPAS
CSGPDLVEFICRNLDVASGRFSRYRRDIQVERQLWRQCQEELGLQRLSKD
DSVTPDKMVMAIRHLLQSGVKSCRGLSLHITNYWSVPTDGIVCIPWDFMS
REK*

GH19593.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-PA 491 CG2854-PA 1..491 13..503 2525 100 Plus
CG13295-PA 485 CG13295-PA 11..485 17..501 763 37.4 Plus

GH19593.pep Sequence

Translation from 56 to 1531

> GH19593.pep
MVTLRFLTPRRIVDYCRRLLSTDLVTALRPFYQAIRTDGLAHNPAEKRVN
EESLRLLCSHLESLTGPSASCLPPDGHLEFYIPSGSDESGSRVVSRLVRV
QVDRSLLDPRAVICQILRSCKLLPKEKEQEQMKRGQEMEKELGKVLRKEP
VRERVRPPQAPVQKNLSALRELFKDAKREHSLEIWMRQALARSQASEVAT
LRGKIEGIEAALVQLLGIRGTRYDCGCNMERYHNCLSILKGLSEDPKVAG
QLGALRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLR
LVPLYEKALSAVLLGIRIERRRVPEPGCEARAYAGSLRRVIRAVSEHLRL
EDSVQELPASLQDHHLAIVPDSDIPKVSQTGLFLAPASCSGPDLVEFICR
NLDVASGRFSRYRRDIQVERQLWRQCQEELGLQRLSKDDSVTPDKMVMAI
RHLLQSGVKSCRGLSLHITNYWSVPTDGIVCIPWDFMSREK*

GH19593.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22210-PA 460 GF22210-PA 17..453 16..486 1556 65.1 Plus
Dana\GF10929-PA 487 GF10929-PA 24..487 18..489 767 36.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12929-PA 493 GG12929-PA 1..493 1..491 2406 92.9 Plus
Dere\GG14090-PA 485 GG14090-PA 11..485 5..489 784 37.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16445-PA 482 GH16445-PA 8..482 4..489 786 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-PA 491 CG2854-PA 1..491 1..491 2525 100 Plus
CG13295-PA 485 CG13295-PA 11..485 5..489 763 37.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16700-PA 493 GI16700-PA 28..493 13..489 775 37.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15525-PA 496 GL15525-PA 31..496 17..489 781 36.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12178-PA 496 GA12178-PA 31..496 17..489 780 36.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19221-PA 491 GM19221-PA 1..491 1..491 2468 95.5 Plus
Dsec\GM13873-PA 485 GM13873-PA 11..485 5..489 784 36.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16606-PA 455 GD16606-PA 1..455 1..491 2145 85.6 Plus
Dsim\GD13157-PA 486 GD13157-PA 11..485 5..489 773 36.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12436-PA 489 GJ12436-PA 28..489 17..489 802 38.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10330-PA 471 GK10330-PA 23..465 17..490 922 44.7 Plus
Dwil\GK16928-PA 497 GK16928-PA 24..497 17..489 769 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16256-PA 508 GE16256-PA 1..508 1..491 2310 87.8 Plus
Dyak\GE20513-PA 485 GE20513-PA 11..485 5..489 787 37 Plus