Clone GH19637 Report

Search the DGRC for GH19637

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:196
Well:37
Vector:pOT2
Associated Gene/TranscriptCG30291-RA
Protein status:GH19637.pep: gold
Preliminary Size:1776
Sequenced Size:1647

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3282 2001-01-01 Release 2 assignment
CG30291 2001-10-10 Blastp of sequenced clone
CG30291 2003-01-01 Sim4 clustering to Release 3
CG30291 2008-04-29 Release 5.5 accounting
CG30291 2008-08-15 Release 5.9 accounting
CG30291 2008-12-18 5.12 accounting

Clone Sequence Records

GH19637.complete Sequence

1647 bp (1647 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060743

> GH19637.complete
CCAGCTGCTAAAATAATAGAAAACAGTCTGCGTGGACAAACATTTAATTA
AAATGAATGAGTCCGAGATCCCCATCGACATACACACGCTGAAGCTGCAG
GACTGGCTGATCAGCCGCAGAATTGTGCCCAAGAATGTGCAGCAGGAGCT
TAGGGAGATCCACAGGAAGATTAGCAACGCCCTGCAGGACATGCCCTCCA
ATGAGCAGCTGATCAAGCTGTTGGCCCGGACAAATATCAACTACTACCAT
GTGAAGGAGATCATTGAGATCCTCAAGCAGACGGAGAAGGACACCAAGAG
CGTGTTCGGCACCTACGGCAGCCAGCGCATGAAGGACTGGCAAGAGATTA
GCCGCCTGTACGAAAAGAATGCCACCTACCTGGCCGAAACGGCTCAGATT
TTCGTGCGCAATGTGAACTACGAGATTCCCGGAGTGCGAAAGCAGATGGC
CAGGCTGGAGCAGCAGGCGGACGAGACCCAGAAGCGAGCGCACGATCTGA
ACAAGCCCGAGAGCCAAATCCTGGCCGACCACTCGGCTTTGCTGGAGCAA
CTGGGCGTCAAGGGCGACAATCTGCATGCCGAGTTCGTCCAGGTTCTATC
TGGTCTACCGGAACTATACGATAAGTCGCTGGTGGGCATTGCCAATATTC
AGCCGGGCATCGACCTGTATGCGGAGGTCAGCGGCAACAAGCAAGTGCTG
CCTATCCTGAACCACCTGGTGGAGTTTGGCAACACCACCGTGTACCAGTA
CATCCACAAGGAAGCACCCTTGGCCGTCGAGGAGCCGCCCATTCGGCTAA
ATCTCAGCGAGGGCAACGCCAGCAAGGATGACAATGCTGTGGCCGAGATT
GACTTCGGAACGGATGACAACGGCGGAACTTCGTCGACCGTTTCGGCTGA
GATTATCGACTACGGGGACTTCGGCAGCGGGGATTTGCCGGAAAGCGACG
GCGGCAACATCGACTGGGGCATTGAGAGTGCACCCACCGATGCGGTGGAA
ATCAATTTTGACATTCCCGTCGAGGAGTACGGCATCGTGGTGGAGGGCAC
CGGCATGGATGGCGGCACTGCCAAGGGCGATCAGGCCTACACTTTGCTGG
ACTCACCCAACTATCGCGATCGCTTCCTGGACGAAATCTACGAACTGGAA
TCCTTTCTACGCATGCGTATCTACGAGCTCAAGCAGCTTGAATCCTCCAG
CGACATCATGTTCTCGCTGATGGACAACATTGCCACCCACGACGGTGAGA
GCATCTGGAAGATACTCGTGTCCGTGGAGAAAATAATCCAGCAGACATCC
GACAAGCAGACGCAGCACCTCTTCCAGCTGAAGCACTCCCCAAAGTATGC
CAATATGCTGGCCACCAAGCTGCAGCAAATGACAAAGGCCGTGGAGAAGC
TGCGCGCCACGCGAGAGGCGCTCAAGCAGTTGACCATCGAGCTGCGGGAG
CAGCGGCAGGACCTGAATCCCGTGCTGGAGGAGCTGATTGCTCAGACTCG
CACGCTGCAGTCTCACATCGAGAAGGATATATCCAAGCGGTACAAGAACC
GGGTGGTTAACTTGATGGGGGGTGTTAACTAATGTAACTTTTTTATGGCT
GTTTGTTAAAAATAAACTGGTAAATGGACAAAAAAAAAAAAAAAAAA

GH19637.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30291-RA 1726 CG30291-RA 45..1676 1..1632 8160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16894801..16895644 1077..234 4175 99.6 Minus
chr2R 21145070 chr2R 16894195..16894748 1629..1076 2635 98.4 Minus
chr2R 21145070 chr2R 16895696..16895870 233..59 815 97.7 Minus
chr2R 21145070 chr2R 16895932..16895987 59..4 280 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21008361..21009204 1077..234 4220 100 Minus
2R 25286936 2R 21007752..21008308 1632..1076 2785 100 Minus
2R 25286936 2R 21009256..21009430 233..59 875 100 Minus
2R 25286936 2R 21009492..21009550 59..1 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21009560..21010403 1077..234 4220 100 Minus
2R 25260384 2R 21008951..21009507 1632..1076 2785 100 Minus
2R 25260384 2R 21010455..21010629 233..59 875 100 Minus
2R 25260384 2R 21010691..21010749 59..1 295 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:07:32 has no hits.

GH19637.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:08:39 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16894195..16894747 1077..1629 98 <- Minus
chr2R 16894802..16895644 234..1076 99 <- Minus
chr2R 16895696..16895870 59..233 97 <- Minus
chr2R 16895933..16895990 1..58 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:26 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 1..1530 53..1582 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:24 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 1..1530 53..1582 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:53 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 1..1530 53..1582 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:16 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 1..1530 53..1582 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:49 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 1..1530 53..1582 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:01 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 24..1652 1..1629 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:23 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 24..1652 1..1629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:53 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 27..1655 1..1629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:16 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 24..1652 1..1629 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:49 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
CG30291-RA 27..1655 1..1629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:39 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21007755..21008307 1077..1629 100 <- Minus
2R 21008362..21009204 234..1076 100 <- Minus
2R 21009256..21009430 59..233 100 <- Minus
2R 21009493..21009550 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:39 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21007755..21008307 1077..1629 100 <- Minus
2R 21008362..21009204 234..1076 100 <- Minus
2R 21009256..21009430 59..233 100 <- Minus
2R 21009493..21009550 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:39 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21007755..21008307 1077..1629 100 <- Minus
2R 21008362..21009204 234..1076 100 <- Minus
2R 21009256..21009430 59..233 100 <- Minus
2R 21009493..21009550 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:53 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16896998..16897055 1..58 100   Minus
arm_2R 16895260..16895812 1077..1629 100 <- Minus
arm_2R 16895867..16896709 234..1076 100 <- Minus
arm_2R 16896761..16896935 59..233 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:16 Download gff for GH19637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21008954..21009506 1077..1629 100 <- Minus
2R 21009561..21010403 234..1076 100 <- Minus
2R 21010455..21010629 59..233 100 <- Minus
2R 21010692..21010749 1..58 100   Minus

GH19637.pep Sequence

Translation from 52 to 1581

> GH19637.pep
MNESEIPIDIHTLKLQDWLISRRIVPKNVQQELREIHRKISNALQDMPSN
EQLIKLLARTNINYYHVKEIIEILKQTEKDTKSVFGTYGSQRMKDWQEIS
RLYEKNATYLAETAQIFVRNVNYEIPGVRKQMARLEQQADETQKRAHDLN
KPESQILADHSALLEQLGVKGDNLHAEFVQVLSGLPELYDKSLVGIANIQ
PGIDLYAEVSGNKQVLPILNHLVEFGNTTVYQYIHKEAPLAVEEPPIRLN
LSEGNASKDDNAVAEIDFGTDDNGGTSSTVSAEIIDYGDFGSGDLPESDG
GNIDWGIESAPTDAVEINFDIPVEEYGIVVEGTGMDGGTAKGDQAYTLLD
SPNYRDRFLDEIYELESFLRMRIYELKQLESSSDIMFSLMDNIATHDGES
IWKILVSVEKIIQQTSDKQTQHLFQLKHSPKYANMLATKLQQMTKAVEKL
RATREALKQLTIELREQRQDLNPVLEELIAQTRTLQSHIEKDISKRYKNR
VVNLMGGVN*

GH19637.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12730-PA 515 GF12730-PA 1..515 1..509 2392 87.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20815-PA 504 GG20815-PA 1..504 1..509 2511 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21376-PA 504 GH21376-PA 1..504 1..509 2172 80.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30291-PA 509 CG30291-PA 1..509 1..509 2592 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18552-PA 503 GI18552-PA 1..503 1..509 2201 80.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10190-PA 507 GL10190-PA 1..507 1..509 2255 83.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15755-PA 513 GA15755-PA 1..513 1..509 2309 84.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15761-PA 500 GM15761-PA 1..500 1..509 2506 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25236-PA 478 GD25236-PA 3..478 2..509 2346 88.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20347-PA 503 GJ20347-PA 1..503 1..509 2189 80.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23252-PA 511 GK23252-PA 1..511 1..509 2265 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13754-PA 509 GE13754-PA 1..509 1..509 2560 94.5 Plus

GH19637.hyp Sequence

Translation from 52 to 1581

> GH19637.hyp
MNESEIPIDIHTLKLQDWLISRRIVPKNVQQELREIHRKISNALQDMPSN
EQLIKLLARTNINYYHVKEIIEILKQTEKDTKSVFGTYGSQRMKDWQEIS
RLYEKNATYLAETAQIFVRNVNYEIPGVRKQMARLEQQADETQKRAHDLN
KPESQILADHSALLEQLGVKGDNLHAEFVQVLSGLPELYDKSLVGIANIQ
PGIDLYAEVSGNKQVLPILNHLVEFGNTTVYQYIHKEAPLAVEEPPIRLN
LSEGNASKDDNAVAEIDFGTDDNGGTSSTVSAEIIDYGDFGSGDLPESDG
GNIDWGIESAPTDAVEINFDIPVEEYGIVVEGTGMDGGTAKGDQAYTLLD
SPNYRDRFLDEIYELESFLRMRIYELKQLESSSDIMFSLMDNIATHDGES
IWKILVSVEKIIQQTSDKQTQHLFQLKHSPKYANMLATKLQQMTKAVEKL
RATREALKQLTIELREQRQDLNPVLEELIAQTRTLQSHIEKDISKRYKNR
VVNLMGGVN*

GH19637.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG30291-PA 509 CG30291-PA 1..509 1..509 2592 100 Plus