Clone GH19655 Report

Search the DGRC for GH19655

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:196
Well:55
Vector:pOT2
Associated Gene/TranscriptCG15208-RA
Protein status:GH19655.pep: gold
Preliminary Size:1495
Sequenced Size:1387

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15208 2001-01-01 Release 2 assignment
CG15208 2001-10-10 Blastp of sequenced clone
CG15208 2003-01-01 Sim4 clustering to Release 3
CG15208 2008-04-29 Release 5.5 accounting
CG15208 2008-08-15 Release 5.9 accounting
CG15208 2008-12-18 5.12 accounting

Clone Sequence Records

GH19655.complete Sequence

1387 bp (1387 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060744

> GH19655.complete
TTCACGAGAACATCGGATACTCGACCCGATTTTGTACAGAACATTTTCAT
GGAAATTTTTCTAAACATATTTTAACACTTCTTTGTCAAACTCTTCTTTC
CTTAAAAATCAAAATTTAATTCTACTCTAAAAGCCCCATATCATTAGAAA
TTATCATAGCTCGCGGAGATGGAGAAGCAACTAACAGAGCACATGGTGGA
AAGCATGTCCAGGTGCAGGGACTATGCCAAGGCCTTGAAGTTGAATTTCT
GTAACTGCGGCCTGAATGACATAAGTCTCTGCCTCAAGATGCCGTACCTG
GAGGTCCTTTCGCTTAGCATGAACAAGATCACTTCATTGAAAAGCCTGGT
GAGATGCACTCGACTGAAGGAGCTGTACTTGCGCCAGAACGAGATAGCAG
ACTTTGATGAGCTGAAATATCTAGTCAATGCCAAATCCCTCACATCCCTC
TGGCTGCTGGACAATCCATGCTCTATTGCCGCTGGCTCCAACTATCGGGC
ATCTGTGCTACGAATGCTGCCGAATCTAAAGAAGCTGGACAACGTAGATG
TTGCCGAAGAGGAGCTGGAATCCGCTTTGCGATACGATTACTACCCGGAC
GTAGGGAGTGCGATCCTTAATCCTGTTTTGGATTTAAGCAACTGCAGTCC
CGATGACATGGCATACCGCGATATGATCGAACAGTGCGATCGGACGATCC
GTCAGGTCCAGCAGCAGCAAAGGAAAAGATTCGCTAGCGGGGATGCCAAA
AATATTGACGAACTAGCTCGAATTAGAAGTAGATCGGTGTTGGTGAATGG
TGAACGCTTGCCTCTGTTCTTTCCGTCCGATTTGCGTCAGGTGCGTCAGG
CTCAAAAAGCTCAGGATGCGCTTCGGAAGCAAAAGAATCAGCCGATTTGG
CATAATGAGCAGGTTCAGCAGGCTCATAAGTTTACGATGACTCCGCAGGC
TGTGCACGAACAGGTTCAGGGTATTCAGTCAATTTCATCGGATCGGAACG
CCGACAGCCCTGCCGCTTCTACCTCGACTTTAGCCGAAAATCTTATCGAG
CTGATCAATTCGCGACGCCAAGATGTGGTGACCCCACCCGGACATCTGTT
GCCCAATGTATCCTCTGGGTTAGCATTGAATGGCGCTAATTCCACAACTT
TGGAGCGGCATAATAACAGTTTGTCGGCGGCTTTGTTACTCATCCAAGAT
ATGAACGCATCCCAACTGGAGACTCTAGTCCTCGCCATCATCGAACAGTT
CGTCCAACTTAATTAATTTTCAAAATTAATTTTTGTAACGTGATCTTAAA
ACCCTAATGATTATTGATTAATGCTCCACAATATATCCATTATATGAAAT
ATATATTTAAAATATATCCAAAAAAAAAAAAAAAAAA

GH19655.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-RA 1379 CG15208-RA 2..1377 1..1376 6865 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10791680..10793048 1..1369 6830 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10900361..10901736 1..1376 6865 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10908459..10909834 1..1376 6865 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 14:20:34 has no hits.

GH19655.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:21:50 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10791680..10793048 1..1369 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:28 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 1..1098 169..1266 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:25 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 1..1098 169..1266 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:03:48 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 1..1098 169..1266 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:17 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 1..1098 169..1266 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:26:12 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 1..1098 169..1266 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:02 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 2..1370 1..1369 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:25 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 2..1370 1..1369 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:03:48 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 2..1370 1..1369 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:18 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 2..1370 1..1369 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:12 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 30..1398 1..1369 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:21:50 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
X 10900361..10901729 1..1369 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:21:50 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
X 10900361..10901729 1..1369 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:21:50 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
X 10900361..10901729 1..1369 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:03:48 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10794394..10795762 1..1369 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:18 Download gff for GH19655.complete
Subject Subject Range Query Range Percent Splice Strand
X 10908459..10909827 1..1369 100   Plus

GH19655.pep Sequence

Translation from 168 to 1265

> GH19655.pep
MEKQLTEHMVESMSRCRDYAKALKLNFCNCGLNDISLCLKMPYLEVLSLS
MNKITSLKSLVRCTRLKELYLRQNEIADFDELKYLVNAKSLTSLWLLDNP
CSIAAGSNYRASVLRMLPNLKKLDNVDVAEEELESALRYDYYPDVGSAIL
NPVLDLSNCSPDDMAYRDMIEQCDRTIRQVQQQQRKRFASGDAKNIDELA
RIRSRSVLVNGERLPLFFPSDLRQVRQAQKAQDALRKQKNQPIWHNEQVQ
QAHKFTMTPQAVHEQVQGIQSISSDRNADSPAASTSTLAENLIELINSRR
QDVVTPPGHLLPNVSSGLALNGANSTTLERHNNSLSAALLLIQDMNASQL
ETLVLAIIEQFVQLN*

GH19655.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20473-PA 447 GF20473-PA 1..159 1..158 459 57.9 Plus
Dana\GF24405-PA 479 GF24405-PA 3..137 4..138 336 50.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18376-PA 363 GG18376-PA 1..357 1..362 568 40.8 Plus
Dere\GG14222-PA 471 GG14222-PA 3..161 4..178 342 44.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17002-PA 469 GH17002-PA 3..137 4..138 324 48.9 Plus
Dgri\GH21742-PA 261 GH21742-PA 36..152 18..135 148 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-PC 365 CG15208-PC 1..365 1..365 1846 100 Plus
CG15208-PB 365 CG15208-PB 1..365 1..365 1846 100 Plus
CG15208-PA 365 CG15208-PA 1..365 1..365 1846 100 Plus
CG14995-PD 354 CG14995-PD 3..344 4..357 377 30.9 Plus
CG14995-PG 362 CG14995-PG 3..352 4..357 373 30.5 Plus
CG14995-PF 232 CG14995-PF 3..175 4..188 353 42.3 Plus
CG14995-PC 411 CG14995-PC 3..175 4..188 353 42.3 Plus
CG14995-PI 419 CG14995-PI 3..175 4..188 353 42.3 Plus
CG14995-PA 454 CG14995-PA 3..175 4..188 353 42.3 Plus
CG14995-PH 389 CG14995-PH 66..379 32..357 347 30.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11416-PA 469 GI11416-PA 3..137 4..138 329 49.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20213-PA 289 GL20213-PA 4..153 5..154 412 56 Plus
Dper\GL16756-PA 471 GL16756-PA 3..137 4..138 330 50.4 Plus
Dper\GL14976-PA 390 GL14976-PA 4..137 5..138 301 45.5 Plus
Dper\GL17265-PA 263 GL17265-PA 36..152 18..135 147 37 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13570-PA 392 GA13570-PA 4..173 5..175 426 53.2 Plus
Dpse\GA13412-PA 471 GA13412-PA 3..137 4..138 330 50.4 Plus
Dpse\GA22380-PA 379 GA22380-PA 4..137 5..138 298 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11441-PA 258 GM11441-PA 1..179 1..182 687 72.5 Plus
Dsec\GM14015-PA 455 GM14015-PA 3..161 4..178 344 42.9 Plus
Dsec\GM11441-PA 258 GM11441-PA 174..256 285..364 244 62.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24785-PA 258 GD24785-PA 1..180 1..183 683 72.1 Plus
Dsim\GD24785-PA 258 GD24785-PA 174..256 285..364 214 55.4 Plus
Dsim\GD13294-PA 414 GD13294-PA 3..119 4..178 176 30.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13612-PA 454 GJ13612-PA 3..137 4..138 330 50.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25851-PA 418 GK25851-PA 3..136 4..137 350 49.3 Plus
Dwil\GK13704-PA 475 GK13704-PA 3..137 4..138 304 47.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15894-PA 421 GE15894-PA 1..413 1..360 622 38.9 Plus
Dyak\GE20650-PA 467 GE20650-PA 3..137 4..138 342 51.9 Plus

GH19655.hyp Sequence

Translation from 168 to 1265

> GH19655.hyp
MEKQLTEHMVESMSRCRDYAKALKLNFCNCGLNDISLCLKMPYLEVLSLS
MNKITSLKSLVRCTRLKELYLRQNEIADFDELKYLVNAKSLTSLWLLDNP
CSIAAGSNYRASVLRMLPNLKKLDNVDVAEEELESALRYDYYPDVGSAIL
NPVLDLSNCSPDDMAYRDMIEQCDRTIRQVQQQQRKRFASGDAKNIDELA
RIRSRSVLVNGERLPLFFPSDLRQVRQAQKAQDALRKQKNQPIWHNEQVQ
QAHKFTMTPQAVHEQVQGIQSISSDRNADSPAASTSTLAENLIELINSRR
QDVVTPPGHLLPNVSSGLALNGANSTTLERHNNSLSAALLLIQDMNASQL
ETLVLAIIEQFVQLN*

GH19655.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-PC 365 CG15208-PC 1..365 1..365 1846 100 Plus
CG15208-PB 365 CG15208-PB 1..365 1..365 1846 100 Plus
CG15208-PA 365 CG15208-PA 1..365 1..365 1846 100 Plus
CG14995-PD 354 CG14995-PD 3..344 4..357 377 30.9 Plus
CG14995-PG 362 CG14995-PG 3..352 4..357 373 30.5 Plus