Clone GH19763 Report

Search the DGRC for GH19763

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:197
Well:63
Vector:pOT2
Associated Gene/TranscriptCG9427-RA
Protein status:GH19763.pep: gold
Preliminary Size:1483
Sequenced Size:859

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9427 2001-01-01 Release 2 assignment
CG9427 2001-07-04 Blastp of sequenced clone
CG9427 2003-01-01 Sim4 clustering to Release 3
CG9427 2008-04-29 Release 5.5 accounting
CG9427 2008-08-15 Release 5.9 accounting
CG9427 2008-12-18 5.12 accounting

Clone Sequence Records

GH19763.complete Sequence

859 bp (859 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051550

> GH19763.complete
CTAAAATCGAGTCCGACGGTCGCGTTAGCTTGGGCTTGGCATTCGCTGCG
GACACAGAAGCCTTCATTCCCGCACTTCGTCGAAGGTCGATCGATTTGGC
TAACCAAAGCTCAAATTACTAGTCACAAGATGACGAAGTTGGCGTCCACC
GCAAGCCTTCTGCTTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGA
GAAGCCACGGGAGAAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTT
ACGAGTCCTTGTGCCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCC
GTTTACGAGGAGTTCGGGGACTACATTGATATACTCTTAGTGCCCTTCGG
AAAATCGCAGTCGGAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGAC
CGGCTGAGTGCAAGGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACC
GCAAACCAGGCGGCGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCC
GGATTATTCCCGCATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCG
ATGTGGTCCACTGCCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAG
GCGGAGCTGGTGACCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGT
CTACAATGGCGTCTTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATT
TCCGCGGCACGGTTTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGC
AGCAGCACAATCTGCCAGTAGATAGATCTGCTAAATGTCCAATGTAATTG
CCTCAAGTTTGGAATGAAATTAAAATTCATAAACGCAAAAAAAAAAAAAA
AAAAAAAAA

GH19763.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-RA 1031 CG9427-RA 125..961 1..837 4185 100 Plus
CG9427.a 757 CG9427.a 147..754 230..837 3040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5451478..5451770 522..230 1465 100 Minus
chr3R 27901430 chr3R 5452044..5452274 231..1 1155 100 Minus
chr3R 27901430 chr3R 5450968..5451141 834..661 870 100 Minus
chr3R 27901430 chr3R 5451234..5451376 662..520 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9625669..9625961 522..230 1465 100 Minus
3R 32079331 3R 9626235..9626465 231..1 1155 100 Minus
3R 32079331 3R 9625156..9625332 837..661 885 100 Minus
3R 32079331 3R 9625425..9625567 662..520 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9366500..9366792 522..230 1465 100 Minus
3R 31820162 3R 9367066..9367296 231..1 1155 100 Minus
3R 31820162 3R 9365987..9366163 837..661 885 100 Minus
3R 31820162 3R 9366256..9366398 662..520 715 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:17:03 has no hits.

GH19763.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:18:06 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5451236..5451373 523..660 100 <- Minus
chr3R 5450965..5451141 661..836 98 <- Minus
chr3R 5451478..5451768 232..522 100 <- Minus
chr3R 5452044..5452274 1..231 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:35 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..642 130..771 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:50 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..642 130..771 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:37 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..642 130..771 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:45 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..642 130..771 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:55 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..642 130..771 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:04 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..836 1..836 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:50 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..836 1..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:37 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 12..847 1..836 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:45 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 1..836 1..836 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:55 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
CG9427-RA 12..847 1..836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:06 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9625157..9625332 661..836 100 <- Minus
3R 9625427..9625564 523..660 100 <- Minus
3R 9625669..9625959 232..522 100 <- Minus
3R 9626235..9626465 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:06 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9625157..9625332 661..836 100 <- Minus
3R 9625427..9625564 523..660 100 <- Minus
3R 9625669..9625959 232..522 100 <- Minus
3R 9626235..9626465 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:06 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9625157..9625332 661..836 100 <- Minus
3R 9625427..9625564 523..660 100 <- Minus
3R 9625669..9625959 232..522 100 <- Minus
3R 9626235..9626465 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:37 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5450879..5451054 661..836 100 <- Minus
arm_3R 5451149..5451286 523..660 100 <- Minus
arm_3R 5451391..5451681 232..522 100 <- Minus
arm_3R 5451957..5452187 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:38 Download gff for GH19763.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9366500..9366790 232..522 100 <- Minus
3R 9367066..9367296 1..231 100   Minus
3R 9365988..9366163 661..836 100 <- Minus
3R 9366258..9366395 523..660 100 <- Minus

GH19763.hyp Sequence

Translation from 0 to 770

> GH19763.hyp
LKSSPTVALAWAWHSLRTQKPSFPHFVEGRSIWLTKAQITSHKMTKLAST
ASLLLLVLSLGWAKLEEKPREKRQSNKLHITLLYESLCPDSRNFMHQLGP
VYEEFGDYIDILLVPFGKSQSERNGAIFHCQHGPAECKGNRLQSCVINST
ANQAAQVKFVVCQMLAPDYSRIDQCANEAGLLTDVVHCLSSETGTKLQLQ
AELVTKQYSPSFIPTIVYNGVFDQQLQDHSLRDFRGTVCYMLRQQNLLPS
SSTICQ*

GH19763.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-PA 213 CG9427-PA 1..213 44..256 1113 100 Plus
CG9427-PB 212 CG9427-PB 22..212 66..256 956 95.3 Plus
GILT1-PA 250 CG9796-PA 24..208 77..239 212 33.5 Plus
CG41378-PD 205 CG41378-PD 1..190 56..239 195 30.1 Plus
CG41378-PC 196 CG41378-PC 13..181 77..239 194 31.4 Plus

GH19763.pep Sequence

Translation from 129 to 770

> GH19763.pep
MTKLASTASLLLLVLSLGWAKLEEKPREKRQSNKLHITLLYESLCPDSRN
FMHQLGPVYEEFGDYIDILLVPFGKSQSERNGAIFHCQHGPAECKGNRLQ
SCVINSTANQAAQVKFVVCQMLAPDYSRIDQCANEAGLLTDVVHCLSSET
GTKLQLQAELVTKQYSPSFIPTIVYNGVFDQQLQDHSLRDFRGTVCYMLR
QQNLLPSSSTICQ*

GH19763.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17838-PA 213 GF17838-PA 1..213 1..213 983 82.6 Plus
Dana\GF17383-PA 251 GF17383-PA 24..208 34..196 222 32.4 Plus
Dana\GF16248-PA 226 GF16248-PA 32..224 23..207 180 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17351-PA 209 GG17351-PA 1..209 1..213 995 93.4 Plus
Dere\GG17054-PA 250 GG17054-PA 24..208 34..196 231 35.1 Plus
Dere\GG11213-PA 207 GG11213-PA 3..198 9..202 196 27.5 Plus
Dere\GG11212-PA 218 GG11212-PA 32..218 33..211 176 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19011-PA 208 GH19011-PA 6..208 7..213 777 70.5 Plus
Dgri\GH18545-PA 245 GH18545-PA 20..204 34..196 223 34.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9427-PA 213 CG9427-PA 1..213 1..213 1113 100 Plus
CG9427-PB 212 CG9427-PB 22..212 23..213 956 95.3 Plus
GILT1-PA 250 CG9796-PA 24..208 34..196 212 33.5 Plus
CG41378-PD 205 CG41378-PD 1..190 13..196 195 30.1 Plus
CG41378-PC 196 CG41378-PC 13..181 34..196 194 31.4 Plus
CG41378-PB 228 CG41378-PB 45..213 34..196 194 31.4 Plus
GILT2-PA 207 CG10157-PA 5..198 11..202 176 26.8 Plus
GILT3-PA 216 CG13822-PA 29..215 33..211 164 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23067-PA 208 GI23067-PA 1..208 1..213 774 69 Plus
Dmoj\GI23244-PA 245 GI23244-PA 20..204 34..196 225 33 Plus
Dmoj\GI23191-PA 206 GI23191-PA 6..192 11..196 192 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22172-PA 217 GL22172-PA 9..217 6..213 896 79.9 Plus
Dper\GL23064-PA 250 GL23064-PA 24..208 34..196 227 34.6 Plus
Dper\GL13649-PA 210 GL13649-PA 9..195 10..196 190 27.7 Plus
Dper\GL13648-PA 224 GL13648-PA 3..209 2..196 182 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21779-PA 217 GA21779-PA 9..217 6..213 893 79.4 Plus
Dpse\GA24052-PA 250 GA24052-PA 24..208 34..196 227 34.6 Plus
Dpse\GA22042-PA 250 GA22042-PA 24..208 34..196 227 34.6 Plus
Dpse\GA12550-PA 214 GA12550-PA 3..199 2..196 190 30.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26237-PA 213 GM26237-PA 1..213 1..213 1125 98.1 Plus
Dsec\GM25939-PA 250 GM25939-PA 24..208 34..196 230 35.1 Plus
Dsec\GM26511-PA 216 GM26511-PA 29..215 33..211 172 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20778-PA 213 GD20778-PA 1..213 1..213 1125 98.1 Plus
Dsim\GD20500-PA 250 GD20500-PA 24..208 34..196 224 34.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24579-PA 209 GJ24579-PA 1..209 1..213 763 66.7 Plus
Dvir\GJ10741-PA 244 GJ10741-PA 20..204 34..196 229 34.1 Plus
Dvir\GJ24109-PA 230 GJ24109-PA 47..228 34..207 141 29.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11854-PA 217 GK11854-PA 1..217 1..213 792 69.6 Plus
Dwil\GK13347-PA 232 GK13347-PA 23..207 34..196 229 34.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24757-PA 213 GE24757-PA 1..213 1..213 1038 95.3 Plus
Dyak\GE24442-PA 250 GE24442-PA 24..208 34..196 228 34.6 Plus
Dyak\GE10377-PA 207 GE10377-PA 3..198 9..202 191 27.5 Plus