Clone GH19789 Report

Search the DGRC for GH19789

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:197
Well:89
Vector:pOT2
Associated Gene/TranscriptCG14740-RA
Protein status:GH19789.pep: gold
Preliminary Size:1562
Sequenced Size:1568

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14740 2001-01-01 Release 2 assignment
CG14740 2001-09-19 Blastp of sequenced clone
CG14740 2003-01-01 Sim4 clustering to Release 3
CG14740 2008-04-29 Release 5.5 accounting
CG14740 2008-08-15 Release 5.9 accounting
CG14740 2008-12-18 5.12 accounting

Clone Sequence Records

GH19789.complete Sequence

1568 bp (1568 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058419

> GH19789.complete
ATAACATAAAATCTAAATTACCTTTTTTTTTGCGAATTCTTTCACTATGC
AAAAAACCAATAACTACAAAAGCTTCAAAATCTTCTTCAAGAACGTTCCA
TTTCGTTCATATCCCGACTGCAAGAATGGTAAAGGTTCAGGCCTAAAAGC
CAAGTTGGCAAAGAAAATTCCTATAGAACGTGAAAAGTTTTTGGGTATAA
AGTGTCTGCACGGCAAGAAGATAATTGGCCAGATCAGTGTTAATAGCGTG
ATTGGAGGAATGCGAGGACTTCCACTTTTGTTTTGCGAGACATCCAGCTT
GGACAAAAACAAGGGTATTTATTACCGTGGAAAACTGCTTAAGGATGTGT
GTGCCAAACTGCCACGGGTGCAAGAGGGCACACAAGAGGGCACTCCCGAA
GGATGTTTCTTCCTGCTGACCAGCGGATCGATGCCCACGAAGAAGGAGGC
ACAGGAAGTGACCAACGAGTGGCTGAAGCGGGGCTCAGTTCCGCGCTACT
GCCTCCGGATGATCGACTCCATGGACAAGCGGGTGCATCCGATGGCCCAA
TTGTGCGCCGCCAGTGCCTGTCTCAATCCGCAGAGCCAGTTCGTCGAGGC
TTACACCAAAGGGGCCAGACGTGCAGACTACTGGAAATACTCCTACGAGG
ATTCAATGAACCTCATCGCCATGCTGCCCACCGTGGCGGCTGCCATCTAT
TCTAACGTGTTTAGGGATGGCGAAGGTTCACGGGAGGTCAACTATGAGGA
GGACTGGTCCGGCAACTTCTGCCGCATGCTTGGACTACCCGAAAAGGATT
TCGTTGATCTTATGCGGCTCTACATGATCCTGCATGCAGATCATGAGAGC
GGCAATGTTTCCGCCCATGCTTGCCACCTAGTCGGAACGGCGCTCAGCGA
TCCCTTCCTGTCTTTCTCGGCCAGCATGTGCGGCCTGGCTGGGCCACTTC
ATGGTTTGGCCAATCAGGAAGTGCTGGTTTGGCTGACAAAGCTTAGGAAG
GCCATTGGCGATGACCCCTCCGATGAAGAGCTAAAGAAGTTCATCGATGA
TACGCTGAAAGGGGGCCAGGTCATTCCCGGCTACGGACACGCTGTCCTTC
GGGACACCGATCCTCGGTTCGTCCTGCAAAACGAGTTTGCCATGAAGCAC
TGCAAGGATGATCCAGGCGTAAAGCTGGTGACCCGCCTGTGGAAGATCAT
ACCAGAGGTGCTCAAGAAGCTCAACAAGGTAGCGAATCCGTATCCAAACG
TCGATGCCCATTCGGGCGTCCTGCTGCAACATTACTGTCTGAAGGAGCTG
AAGTTCTACACAGTTCTTTTCGGAGTTTCTCGGGCGCTTGGAGTTCTGTC
CCAGCTGATTTGGTCCAGGGCTTTGGGAGCCCCAATTGAAAGACCAAAGT
CATTTTCCTCCATCGAGATCTGCAAATTCATCAATGAAGCAGACAAAAAG
GCAGGAAAAAAGAACAATAAGAAAAAGTGCTAGAGAACTAAGATAACAAC
CGATGTTTGTATGTGCAATAAAATTTCCAATAAAAATTTTTAAAATATAA
AAAAAAAAAAAAAAAAAA

GH19789.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14740-RA 1622 CG14740-RA 62..1610 1..1549 7745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7887146..7887923 1071..294 3890 100 Minus
chr3R 27901430 chr3R 7886624..7887050 1492..1066 2135 100 Minus
chr3R 27901430 chr3R 7887990..7888197 297..90 1040 100 Minus
chr3R 27901430 chr3R 7888243..7888333 91..1 455 100 Minus
chr3R 27901430 chr3R 7886511..7886568 1548..1491 275 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12061705..12062482 1071..294 3890 100 Minus
3R 32079331 3R 12061183..12061609 1492..1066 2135 100 Minus
3R 32079331 3R 12062549..12062756 297..90 1040 100 Minus
3R 32079331 3R 12062802..12062892 91..1 455 100 Minus
3R 32079331 3R 12061069..12061127 1549..1491 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11802536..11803313 1071..294 3890 100 Minus
3R 31820162 3R 11802014..11802440 1492..1066 2135 100 Minus
3R 31820162 3R 11803380..11803587 297..90 1040 100 Minus
3R 31820162 3R 11803633..11803723 91..1 455 100 Minus
3R 31820162 3R 11801900..11801958 1549..1491 295 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:16:39 has no hits.

GH19789.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:17:32 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7887990..7888195 92..297 100 <- Minus
chr3R 7888243..7888333 1..91 100   Minus
chr3R 7886624..7887046 1070..1492 100 <- Minus
chr3R 7887148..7887919 298..1069 100 <- Minus
chr3R 7886511..7886566 1493..1548 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:37 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 1..1437 47..1483 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:17 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 1..1437 47..1483 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:13:49 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 1..1437 47..1483 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:00 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 1..1437 47..1483 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:49 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 1..1437 47..1483 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:58 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 53..1600 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:17 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 53..1600 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:13:49 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 53..1600 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:00 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 53..1600 1..1548 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:49 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14740-RA 53..1600 1..1548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:32 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12061070..12061125 1493..1548 100 <- Minus
3R 12061183..12061605 1070..1492 100 <- Minus
3R 12061707..12062478 298..1069 100 <- Minus
3R 12062549..12062754 92..297 100 <- Minus
3R 12062802..12062892 1..91 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:32 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12061070..12061125 1493..1548 100 <- Minus
3R 12061183..12061605 1070..1492 100 <- Minus
3R 12061707..12062478 298..1069 100 <- Minus
3R 12062549..12062754 92..297 100 <- Minus
3R 12062802..12062892 1..91 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:32 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12061070..12061125 1493..1548 100 <- Minus
3R 12061183..12061605 1070..1492 100 <- Minus
3R 12061707..12062478 298..1069 100 <- Minus
3R 12062549..12062754 92..297 100 <- Minus
3R 12062802..12062892 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:13:49 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7888271..7888476 92..297 100 <- Minus
arm_3R 7888524..7888614 1..91 100   Minus
arm_3R 7886905..7887327 1070..1492 100 <- Minus
arm_3R 7887429..7888200 298..1069 100 <- Minus
arm_3R 7886792..7886847 1493..1548 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:11 Download gff for GH19789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11801901..11801956 1493..1548 100 <- Minus
3R 11802014..11802436 1070..1492 100 <- Minus
3R 11802538..11803309 298..1069 100 <- Minus
3R 11803380..11803585 92..297 100 <- Minus
3R 11803633..11803723 1..91 100   Minus

GH19789.pep Sequence

Translation from 46 to 1482

> GH19789.pep
MQKTNNYKSFKIFFKNVPFRSYPDCKNGKGSGLKAKLAKKIPIEREKFLG
IKCLHGKKIIGQISVNSVIGGMRGLPLLFCETSSLDKNKGIYYRGKLLKD
VCAKLPRVQEGTQEGTPEGCFFLLTSGSMPTKKEAQEVTNEWLKRGSVPR
YCLRMIDSMDKRVHPMAQLCAASACLNPQSQFVEAYTKGARRADYWKYSY
EDSMNLIAMLPTVAAAIYSNVFRDGEGSREVNYEEDWSGNFCRMLGLPEK
DFVDLMRLYMILHADHESGNVSAHACHLVGTALSDPFLSFSASMCGLAGP
LHGLANQEVLVWLTKLRKAIGDDPSDEELKKFIDDTLKGGQVIPGYGHAV
LRDTDPRFVLQNEFAMKHCKDDPGVKLVTRLWKIIPEVLKKLNKVANPYP
NVDAHSGVLLQHYCLKELKFYTVLFGVSRALGVLSQLIWSRALGAPIERP
KSFSSIEICKFINEADKKAGKKNNKKKC*

GH19789.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17747-PA 473 GF17747-PA 2..460 3..463 1942 77.2 Plus
Dana\GF19352-PA 535 GF19352-PA 102..535 30..464 1297 52.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17162-PA 483 GG17162-PA 1..471 1..466 2223 88.4 Plus
Dere\GG19590-PA 464 GG19590-PA 31..464 30..464 1298 52.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24061-PA 464 GH24061-PA 31..462 30..462 1287 52.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14740-PA 478 CG14740-PA 1..478 1..478 2534 100 Plus
kdn-PA 464 CG3861-PA 31..464 30..464 1248 52.6 Plus
kdn-PB 522 CG3861-PB 89..522 30..464 1248 52.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15188-PA 464 GI15188-PA 31..464 30..464 1288 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21578-PA 486 GL21578-PA 30..468 19..462 1726 70.9 Plus
Dper\GL26854-PA 519 GL26854-PA 77..519 21..464 1300 52.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26341-PB 471 GA26341-PB 16..471 19..478 1748 69.6 Plus
Dpse\GA17736-PA 519 GA17736-PA 77..519 21..464 1300 52.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26044-PA 478 GM26044-PA 1..478 1..478 2498 96.4 Plus
Dsec\GM12487-PA 209 GM12487-PA 1..209 256..464 770 64.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20606-PA 498 GD20606-PA 1..498 1..478 2471 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17070-PA 464 GJ17070-PA 34..462 33..462 1281 53 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11572-PA 486 GK11572-PA 31..472 17..463 1717 68.7 Plus
Dwil\GK16526-PA 464 GK16526-PA 28..464 27..464 1293 52.3 Plus
Dwil\GK23493-PA 319 GK23493-PA 31..313 17..304 1039 65.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24552-PA 475 GE24552-PA 1..464 1..466 2268 90.1 Plus
Dyak\GE16750-PA 532 GE16750-PA 90..532 21..464 1302 52 Plus

GH19789.hyp Sequence

Translation from 46 to 1482

> GH19789.hyp
MQKTNNYKSFKIFFKNVPFRSYPDCKNGKGSGLKAKLAKKIPIEREKFLG
IKCLHGKKIIGQISVNSVIGGMRGLPLLFCETSSLDKNKGIYYRGKLLKD
VCAKLPRVQEGTQEGTPEGCFFLLTSGSMPTKKEAQEVTNEWLKRGSVPR
YCLRMIDSMDKRVHPMAQLCAASACLNPQSQFVEAYTKGARRADYWKYSY
EDSMNLIAMLPTVAAAIYSNVFRDGEGSREVNYEEDWSGNFCRMLGLPEK
DFVDLMRLYMILHADHESGNVSAHACHLVGTALSDPFLSFSASMCGLAGP
LHGLANQEVLVWLTKLRKAIGDDPSDEELKKFIDDTLKGGQVIPGYGHAV
LRDTDPRFVLQNEFAMKHCKDDPGVKLVTRLWKIIPEVLKKLNKVANPYP
NVDAHSGVLLQHYCLKELKFYTVLFGVSRALGVLSQLIWSRALGAPIERP
KSFSSIEICKFINEADKKAGKKNNKKKC*

GH19789.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14740-PA 478 CG14740-PA 1..478 1..478 2534 100 Plus
kdn-PA 464 CG3861-PA 31..464 30..464 1248 52.6 Plus
kdn-PB 522 CG3861-PB 89..522 30..464 1248 52.6 Plus