Clone GH19849 Report

Search the DGRC for GH19849

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:198
Well:49
Vector:pOT2
Associated Gene/TranscriptCG6656-RA
Protein status:GH19849.pep: gold
Preliminary Size:1695
Sequenced Size:1546

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6656 2001-01-01 Release 2 assignment
CG6656 2001-10-10 Blastp of sequenced clone
CG33092 2003-01-01 Sim4 clustering to Release 3
CG6656 2008-04-29 Release 5.5 accounting
CG6656 2008-08-15 Release 5.9 accounting
CG6656 2008-12-18 5.12 accounting

Clone Sequence Records

GH19849.complete Sequence

1546 bp (1546 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060747

> GH19849.complete
TTTTGTTGCCATCGGACGTGACTTGTATTTATTTATTATTTGTTTCGTCG
ACGGGGGCAGCGAAATCGAAAACACTCGCTATAAAATAAACAAAAAACTA
TTTTTAGGCTGCAAATCTGAAATATATTTTCTCGATCAACTGCAGCAGGA
GCATAGAGACGCCACCGCACCCCCTCCCTAAAAATGGACTGCAAATCGCG
ACGCGGCACCAAAATATCGGTGATCGCCCTGGGAAGTGCCCTCTGTTTCG
TCATGATGGCATACTTTGTGTTCGGCGACAGCAACGACGAGCAGGGTTTG
CGGAATCTACGCATGATATCCATACTGTTCCGACATGGTGCCAAGAATCC
GAGTGGCTTCTATCCGTTGGATCCGCACGCTGCCCACGACTGGCAGGGCG
GGATGGGAGCCCTCACGCCGAAAGGCAGCCTGCAGGCGTACAACCTGGGA
AGGAATCTGCGCATGCGCTACTACCGTCTGCTGCCTCCGAACAGCCTTTA
CACCCAGCAGCAGGTGAATGTGCTCAGCTCGGCCGCGGAACGCTGTGTGA
TGAGCGCCCAGAGCGTCTTGGCCGGCATGATGCCGCCGCTGGAGAACAAG
AATGTGCTACCCATTCCCTGGCAGCCGGTGGCCGTCAATACGCTATCTCG
CAATGAAGATATCCTGTTGGCCCAAAAGAAACCGTGCTTGAAATATGACC
ACATTCTGCAGAAGCTTTACAAATCTCCGCCTCCTGAACTCCAGAAACTG
AACGAGGACAACATGGAGCTGTACAAATTGCTAACCAAAAACACAGGCAA
GAACATTTCAAATGTACTGGACGTGGAGCTACTCTATGGCACACTCAAAA
CCGAAGAGGAAGCTAATCTGGTGCTGCCCGATTGGACTGAGAATATATAC
CCCGAGGAGATTAGGCCACTAGCTGAACGTAGCTATATGCTATTCACCGA
AACAAATCTAATGAAGCGGATTAAGGGTGGCGCTTTCCTTACGGATATAC
TCAACAAAATGCAGAATAAGCGCAAGAGGAATCTCAATCCCGATCGCAAA
ATATTCCTGTACTCCGGTCATGATGTGACTTTGGTTAACGTGATGAATTC
CCTGGGCATACTGGACCAGACTACCAAGCTTCCGGAATATGCATCGGCAT
TGGCCTTCGAGCTTCATCACAGCAAGTCTTTCAGTGATGGAGACTTTGAA
GTGAAGTTGGTTTACTACTACAACAGCGAAGACAAATTCCCCAAGGAGCT
GACCATTCCCAATTGCGATGCACCGTGCTCACTGACCCAGTTTGAGGCCT
CTGTAAAGGCCCTGCTTCTAGATAACTATGATGAGACTTGTGAAAATCAT
CCGACCGATTGCAAAACATAAGATGCCTTCCAGACTTTGTTGAAAGTGTG
TGTCGTTCTGGGTTGTTGTTTAAGTGTCTGGCCATTGCTAAGAAATAGTC
AGATGTGATTTTGGATAATTTTAAATAATTGGTTTCAATTAATAGCTTTA
AAATAAAACTAAGTCAAGTAGACAAACTAAAAAAAAAAAAAAAAAA

GH19849.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-RA 1634 CG6656-RA 47..1576 1..1530 7650 100 Plus
CG6656-RB 1317 CG6656-RB 339..1317 550..1528 4895 100 Plus
CG6656-RB 1317 CG6656-RB 15..338 1..324 1620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17700717..17701123 800..1206 1960 98.8 Plus
chr3R 27901430 chr3R 17699030..17699352 1..324 1570 99.7 Plus
chr3R 27901430 chr3R 17701185..17701508 1205..1528 1515 97.8 Plus
chr3R 27901430 chr3R 17700484..17700621 664..801 675 99.3 Plus
chr3R 27901430 chr3R 17700070..17700199 420..549 620 98.5 Plus
chr3R 27901430 chr3R 17700297..17700411 549..663 545 98.3 Plus
chr3R 27901430 chr3R 17699437..17699532 325..420 450 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21876994..21877400 800..1206 2035 100 Plus
3R 32079331 3R 21877465..21877790 1205..1530 1630 100 Plus
3R 32079331 3R 21875307..21875630 1..324 1620 100 Plus
3R 32079331 3R 21876761..21876898 664..801 690 100 Plus
3R 32079331 3R 21876347..21876476 420..549 650 100 Plus
3R 32079331 3R 21876574..21876688 549..663 575 100 Plus
3R 32079331 3R 21875715..21875810 325..420 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21617825..21618231 800..1206 2035 100 Plus
3R 31820162 3R 21618296..21618621 1205..1530 1630 100 Plus
3R 31820162 3R 21616138..21616461 1..324 1620 100 Plus
3R 31820162 3R 21617592..21617729 664..801 690 100 Plus
3R 31820162 3R 21617178..21617307 420..549 650 100 Plus
3R 31820162 3R 21617405..21617519 549..663 575 100 Plus
3R 31820162 3R 21616546..21616641 325..420 480 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:44:34 has no hits.

GH19849.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:45:16 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17700298..17700411 550..663 98 -> Plus
chr3R 17700484..17700621 664..801 99 -> Plus
chr3R 17699437..17699532 325..420 97 -> Plus
chr3R 17700071..17700199 421..549 98 -> Plus
chr3R 17699030..17699352 1..324 99 -> Plus
chr3R 17700719..17701123 802..1206 98 -> Plus
chr3R 17701187..17701508 1207..1528 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:40 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 1..1188 184..1371 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:26 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 1..1188 184..1371 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:38:31 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 1..1188 184..1371 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:19 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 1..1188 184..1371 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:14:23 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 1..1188 184..1371 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:04 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 15..1542 1..1528 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:26 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 15..1542 1..1528 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:38:31 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 15..1542 1..1528 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:19 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 5..1532 1..1528 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:14:23 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 15..1542 1..1528 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:16 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21875307..21875630 1..324 100 -> Plus
3R 21875715..21875810 325..420 100 -> Plus
3R 21876348..21876476 421..549 100 -> Plus
3R 21876575..21876688 550..663 100 -> Plus
3R 21876761..21876898 664..801 100 -> Plus
3R 21876996..21877400 802..1206 100 -> Plus
3R 21877467..21877788 1207..1528 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:16 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21875307..21875630 1..324 100 -> Plus
3R 21875715..21875810 325..420 100 -> Plus
3R 21876348..21876476 421..549 100 -> Plus
3R 21876575..21876688 550..663 100 -> Plus
3R 21876761..21876898 664..801 100 -> Plus
3R 21876996..21877400 802..1206 100 -> Plus
3R 21877467..21877788 1207..1528 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:16 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21875307..21875630 1..324 100 -> Plus
3R 21875715..21875810 325..420 100 -> Plus
3R 21876348..21876476 421..549 100 -> Plus
3R 21876575..21876688 550..663 100 -> Plus
3R 21876761..21876898 664..801 100 -> Plus
3R 21876996..21877400 802..1206 100 -> Plus
3R 21877467..21877788 1207..1528 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:38:31 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17703189..17703510 1207..1528 100   Plus
arm_3R 17701029..17701352 1..324 100 -> Plus
arm_3R 17701437..17701532 325..420 100 -> Plus
arm_3R 17702070..17702198 421..549 100 -> Plus
arm_3R 17702297..17702410 550..663 100 -> Plus
arm_3R 17702483..17702620 664..801 100 -> Plus
arm_3R 17702718..17703122 802..1206 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:19 Download gff for GH19849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21617179..21617307 421..549 100 -> Plus
3R 21617406..21617519 550..663 100 -> Plus
3R 21617592..21617729 664..801 100 -> Plus
3R 21616138..21616461 1..324 100 -> Plus
3R 21616546..21616641 325..420 100 -> Plus
3R 21617827..21618231 802..1206 100 -> Plus
3R 21618298..21618619 1207..1528 100   Plus

GH19849.pep Sequence

Translation from 183 to 1370

> GH19849.pep
MDCKSRRGTKISVIALGSALCFVMMAYFVFGDSNDEQGLRNLRMISILFR
HGAKNPSGFYPLDPHAAHDWQGGMGALTPKGSLQAYNLGRNLRMRYYRLL
PPNSLYTQQQVNVLSSAAERCVMSAQSVLAGMMPPLENKNVLPIPWQPVA
VNTLSRNEDILLAQKKPCLKYDHILQKLYKSPPPELQKLNEDNMELYKLL
TKNTGKNISNVLDVELLYGTLKTEEEANLVLPDWTENIYPEEIRPLAERS
YMLFTETNLMKRIKGGAFLTDILNKMQNKRKRNLNPDRKIFLYSGHDVTL
VNVMNSLGILDQTTKLPEYASALAFELHHSKSFSDGDFEVKLVYYYNSED
KFPKELTIPNCDAPCSLTQFEASVKALLLDNYDETCENHPTDCKT*

GH19849.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18050-PA 398 GF18050-PA 4..397 1..394 1951 91.1 Plus
Dana\GF10755-PA 408 GF10755-PA 44..395 32..387 549 34 Plus
Dana\GF16215-PA 438 GF16215-PA 48..385 42..387 490 33.2 Plus
Dana\GF10754-PA 423 GF10754-PA 62..409 41..392 476 32.5 Plus
Dana\GF10756-PA 304 GF10756-PA 35..293 41..299 416 36.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11088-PA 395 GG11088-PA 1..395 1..395 2090 98 Plus
Dere\GG13404-PA 391 GG13404-PA 35..378 41..388 539 35.5 Plus
Dere\GG13403-PA 410 GG13403-PA 45..401 31..391 520 32.6 Plus
Dere\GG11981-PA 436 GG11981-PA 45..383 41..387 498 32.6 Plus
Dere\GG13402-PA 422 GG13402-PA 61..405 41..389 460 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16334-PA 398 GH16334-PA 4..397 1..394 1842 85.3 Plus
Dgri\GH14400-PA 390 GH14400-PA 3..355 8..367 532 34.8 Plus
Dgri\GH14399-PA 397 GH14399-PA 42..383 41..386 525 34.1 Plus
Dgri\GH22183-PA 444 GH22183-PA 54..391 42..387 457 33.2 Plus
Dgri\GH14397-PA 419 GH14397-PA 61..405 41..389 409 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-PA 395 CG6656-PA 1..395 1..395 2080 100 Plus
CG9449-PK 391 CG9449-PK 36..378 42..388 542 35.8 Plus
CG9449-PH 404 CG9449-PH 49..391 42..388 542 35.8 Plus
CG9449-PG 404 CG9449-PG 49..391 42..388 542 35.8 Plus
CG9449-PF 404 CG9449-PF 49..391 42..388 542 35.8 Plus
CG9451-PB 410 CG9451-PB 47..397 33..387 528 34 Plus
CG9451-PA 410 CG9451-PA 47..397 33..387 528 34 Plus
Acph-1-PA 438 CG7899-PA 48..385 42..387 476 32.4 Plus
Acph-1-PB 455 CG7899-PB 65..402 42..387 476 32.4 Plus
CG9452-PA 422 CG9452-PA 62..408 42..392 466 32 Plus
CG9449-PJ 164 CG9449-PJ 36..154 42..159 170 33.1 Plus
CG9449-PE 177 CG9449-PE 49..167 42..159 170 33.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22190-PA 398 GI22190-PA 4..397 1..394 1840 85.5 Plus
Dmoj\GI13526-PA 390 GI13526-PA 13..355 20..367 522 34.7 Plus
Dmoj\GI21969-PA 428 GI21969-PA 38..375 42..387 491 32.7 Plus
Dmoj\GI13525-PA 393 GI13525-PA 7..378 14..386 488 31.7 Plus
Dmoj\GI13524-PA 407 GI13524-PA 49..383 41..381 424 30.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23800-PA 398 GL23800-PA 4..397 1..394 1976 92.9 Plus
Dper\GL20896-PA 390 GL20896-PA 34..377 41..388 532 34.6 Plus
Dper\GL20895-PA 399 GL20895-PA 43..384 41..386 520 33.5 Plus
Dper\GL13492-PA 446 GL13492-PA 56..393 42..387 490 33.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19756-PA 398 GA19756-PA 4..397 1..394 1978 92.9 Plus
Dpse\GA21794-PA 390 GA21794-PA 34..377 41..388 529 34.6 Plus
Dpse\GA21796-PA 413 GA21796-PA 57..398 41..386 516 33.2 Plus
Dpse\GA26867-PA 446 GA26867-PA 56..393 42..387 495 34.1 Plus
Dpse\GA28226-PA 425 GA28226-PA 63..410 41..392 458 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26381-PA 395 GM26381-PA 1..395 1..395 2119 99.7 Plus
Dsec\GM18426-PA 391 GM18426-PA 35..378 41..388 542 35.5 Plus
Dsec\GM18316-PA 411 GM18316-PA 56..398 41..387 535 33.9 Plus
Dsec\GM12199-PA 438 GM12199-PA 48..385 42..387 473 32.1 Plus
Dsec\GM18213-PA 422 GM18213-PA 61..405 41..389 462 31.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20904-PA 363 GD20904-PA 1..363 1..395 1887 91.6 Plus
Dsim\GD12277-PA 411 GD12277-PA 56..398 41..387 540 34.5 Plus
Dsim\GD17508-PA 406 GD17508-PA 48..385 42..387 477 32.4 Plus
Dsim\GD12276-PA 422 GD12276-PA 61..405 41..389 470 32.2 Plus
Dsim\GD12279-PA 139 GD12279-PA 1..127 260..389 221 37.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24309-PA 398 GJ24309-PA 4..397 1..394 1846 86.3 Plus
Dvir\GJ11885-PA 390 GJ11885-PA 34..355 41..367 542 37.5 Plus
Dvir\Acph-PA 435 GJ14328-PA 33..382 35..387 513 33 Plus
Dvir\GJ11884-PA 399 GJ11884-PA 43..384 41..386 497 33 Plus
Dvir\GJ11883-PA 409 GJ11883-PA 50..397 41..392 412 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14232-PA 398 GK14232-PA 4..397 1..394 1965 92.4 Plus
Dwil\GK19469-PA 393 GK19469-PA 37..358 41..367 529 36.2 Plus
Dwil\GK19447-PA 420 GK19447-PA 7..402 5..389 517 32 Plus
Dwil\GK14084-PA 434 GK14084-PA 43..381 41..387 499 34 Plus
Dwil\GK19458-PA 414 GK19458-PA 54..400 31..386 498 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10249-PA 395 GE10249-PA 1..395 1..395 2090 98.5 Plus
Dyak\GE22499-PA 391 GE22499-PA 35..378 41..388 546 36 Plus
Dyak\GE22776-PA 410 GE22776-PA 55..397 41..387 524 33.3 Plus
Dyak\GE22498-PA 410 GE22498-PA 55..397 41..387 524 33.3 Plus
Dyak\GE10406-PA 438 GE10406-PA 47..385 41..387 501 32.9 Plus

GH19849.hyp Sequence

Translation from 183 to 1370

> GH19849.hyp
MDCKSRRGTKISVIALGSALCFVMMAYFVFGDSNDEQGLRNLRMISILFR
HGAKNPSGFYPLDPHAAHDWQGGMGALTPKGSLQAYNLGRNLRMRYYRLL
PPNSLYTQQQVNVLSSAAERCVMSAQSVLAGMMPPLENKNVLPIPWQPVA
VNTLSRNEDILLAQKKPCLKYDHILQKLYKSPPPELQKLNEDNMELYKLL
TKNTGKNISNVLDVELLYGTLKTEEEANLVLPDWTENIYPEEIRPLAERS
YMLFTETNLMKRIKGGAFLTDILNKMQNKRKRNLNPDRKIFLYSGHDVTL
VNVMNSLGILDQTTKLPEYASALAFELHHSKSFSDGDFEVKLVYYYNSED
KFPKELTIPNCDAPCSLTQFEASVKALLLDNYDETCENHPTDCKT*

GH19849.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-PA 395 CG6656-PA 1..395 1..395 2080 100 Plus
CG9449-PK 391 CG9449-PK 36..378 42..388 542 35.8 Plus
CG9449-PH 404 CG9449-PH 49..391 42..388 542 35.8 Plus
CG9449-PG 404 CG9449-PG 49..391 42..388 542 35.8 Plus
CG9449-PF 404 CG9449-PF 49..391 42..388 542 35.8 Plus