Clone GH19864 Report

Search the DGRC for GH19864

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:198
Well:64
Vector:pOT2
Associated Gene/Transcriptlsn-RA
Protein status:GH19864.pep: gold
Sequenced Size:873

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6637 2005-07-27 Manual selection by Sue Celniker
CG6637 2008-04-29 In process prior to 5.5
CG6637 2008-08-15 Release 5.9 accounting
CG6637 2008-12-18 5.12 accounting

Clone Sequence Records

GH19864.complete Sequence

873 bp assembled on 2008-05-14

GenBank Submission: BT032686

> GH19864.complete
CAAATATAAACTTAAGGAACAGCTATGCGACGACGTGTAGGCCTGGGAGC
CATACAGCAGCAGAAGCTGGCTGCGGAGAAGTACAAGGACAAGGGCACCG
ATCTGCAGGAAAACCAACTCGAACAGATGACCAAGCAAATGGAGGTATTC
CGGGTGAAACTCGAGGAATTTGCGATGAAACACAAGGAGGACATACGCAA
GAATTCGCAGTTCCGCAAACAGTTTCAGGAAATGTGCGCCGCCATCGGCG
TGGATCCGCTGGCCACCGGTAAAGGATTCTGGAGCGTTCTGGGAATGGGC
GATTTCTACTACGAACTGGGCGTCCAGGTGGTGGAGGTTTGTCTAGCTGC
CAATCACAAAACCGGTGGACTTATGGAGCTGGACGATCTGCGACGTCGGC
TAATCGCCGCCAGAGGTCAGAGTTCAGTGCACCAGGAGATCACCAAGGAG
GACATCCTAATGGCCGCTAAGAAATTGAGCATTTTTGGCAACGGCTTTGT
GGTTCACAAGCTGGGCAAGGGCAAGTACATAGTTCAGTCCATTCCCGGAG
AGCTGAGCATGGAGGAGACCAACATACTGAATGCCGCATCCAATACCGAA
CAAGGCTGTGTTACGCAGAGTCAGCTGATCAAGGATTTGGGCTGGACCGA
CTATCGTGCTCAACAGTCACTGGACAAGGTGCTCGGCGAAGGTCTCTGTT
GGATTGACAAGCAGGCGGGCGATGAGCCAGCCTATTGGTTTCCCAGTTTG
TTTCCCGGTCGAAACGCACAGACAACGGCCGCCACATAGTGTGATCTCGT
AGAACTAATTTATTATGTACGAGAGTTATCATAAAATATATATTTGTACA
ACCGTAAAAAAAAAAAAAAAAAA

GH19864.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
lsn-RA 1137 lsn-RA 152..1010 1..859 4295 100 Plus
lsn.a 908 lsn.a 69..908 16..855 4200 100 Plus
CG6569.a 1523 CG6569.a 1451..1523 859..787 365 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17688961..17689454 1..494 2440 99.6 Plus
chr3R 27901430 chr3R 17689731..17689945 641..855 1060 99.5 Plus
chr3R 27901430 chr3R 17689521..17689668 494..641 710 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:59:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21865254..21865747 1..494 2470 100 Plus
3R 32079331 3R 21866024..21866242 641..859 1095 100 Plus
3R 32079331 3R 21865814..21865961 494..641 740 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21606085..21606578 1..494 2470 100 Plus
3R 31820162 3R 21606855..21607073 641..859 1095 100 Plus
3R 31820162 3R 21606645..21606792 494..641 740 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:53:52 has no hits.

GH19864.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:54:30 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17688961..17689454 1..494 99 -> Plus
chr3R 17689522..17689668 495..641 98 -> Plus
chr3R 17689732..17689945 642..855 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:43 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
CG6637-RA 1..765 25..789 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:54:53 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
lsn-RA 1..765 25..789 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:31:23 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
lsn-RA 1..765 25..789 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:54:01 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
CG6637-RA 1..765 25..789 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:37:41 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
lsn-RA 1..765 25..789 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:18:27 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
CG6637-RA 55..843 1..789 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:54:53 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
lsn-RA 55..909 1..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:31:23 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
lsn-RA 87..941 1..855 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:54:02 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
CG6637-RA 55..843 1..789 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:41 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
lsn-RA 87..941 1..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:54:30 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21865254..21865747 1..494 100 -> Plus
3R 21865815..21865961 495..641 100 -> Plus
3R 21866025..21866238 642..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:54:30 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21865254..21865747 1..494 100 -> Plus
3R 21865815..21865961 495..641 100 -> Plus
3R 21866025..21866238 642..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:54:30 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21865254..21865747 1..494 100 -> Plus
3R 21865815..21865961 495..641 100 -> Plus
3R 21866025..21866238 642..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:31:23 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17690976..17691469 1..494 100 -> Plus
arm_3R 17691537..17691683 495..641 100 -> Plus
arm_3R 17691747..17691960 642..855 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:32:02 Download gff for GH19864.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21606085..21606578 1..494 100 -> Plus
3R 21606646..21606792 495..641 100 -> Plus
3R 21606856..21607069 642..855 100   Plus

GH19864.hyp Sequence

Translation from 24 to 788

> GH19864.hyp
MRRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFA
MKHKEDIRKNSQFRKQFQEMCAAIGVDPLATGKGFWSVLGMGDFYYELGV
QVVEVCLAANHKTGGLMELDDLRRRLIAARGQSSVHQEITKEDILMAAKK
LSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGCVTQSQ
LIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPSLFPGRNAQT
TAAT*

GH19864.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
lsn-PA 254 CG6637-PA 1..254 1..254 1315 100 Plus

GH19864.pep Sequence

Translation from 24 to 788

> GH19864.pep
MRRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFA
MKHKEDIRKNSQFRKQFQEMCAAIGVDPLATGKGFWSVLGMGDFYYELGV
QVVEVCLAANHKTGGLMELDDLRRRLIAARGQSSVHQEITKEDILMAAKK
LSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGCVTQSQ
LIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPSLFPGRNAQT
TAAT*

GH19864.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18047-PA 255 GF18047-PA 1..252 1..254 1258 91.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11084-PA 255 GG11084-PA 1..254 1..254 1256 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16290-PA 253 GH16290-PA 1..253 1..253 1220 87.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
lsn-PA 254 CG6637-PA 1..254 1..254 1315 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22186-PA 253 GI22186-PA 1..253 1..253 1233 89.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23796-PA 253 GL23796-PA 1..252 1..252 1290 94 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19743-PA 253 GA19743-PA 1..252 1..252 1294 94.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26377-PA 254 GM26377-PA 1..254 1..254 1353 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20899-PA 254 GD20899-PA 1..254 1..254 1354 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24305-PA 253 GJ24305-PA 1..253 1..253 1234 90.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14228-PA 254 GK14228-PA 1..254 1..254 1265 92.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10244-PA 254 GE10244-PA 1..254 1..254 1343 98.4 Plus