Clone GH19985 Report

Search the DGRC for GH19985

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:199
Well:85
Vector:pOT2
Associated Gene/TranscriptCG32700-RA
Protein status:GH19985.pep: gold
Preliminary Size:1580
Sequenced Size:1471

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2994 2001-01-01 Release 2 assignment
CG12651 2001-01-01 Release 2 assignment
CG12652 2001-01-01 Release 2 assignment
CG32700 2001-09-19 Blastp of sequenced clone
CG32700 2003-01-01 Sim4 clustering to Release 3
CG32700 2008-04-29 Release 5.5 accounting
CG32700 2008-08-15 Release 5.9 accounting
CG32700 2008-12-18 5.12 accounting

Clone Sequence Records

GH19985.complete Sequence

1471 bp (1471 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060321

> GH19985.complete
AGACTCTCGTGCGGTTCGGTTCTCAGCCTCAGCCTTTGAATTCAGCATAC
TCACATCACAGTCGCAAGTCACTGGTCACTGGTCACAGTTCACAGTCACG
CAGTTACTGCCTTTGCCCGGTTTTCGATTTTCGAAAGATATTCGAAAGTG
CTGAACATACATAATTTTTTTTTTTTTTGGTTTTTGTGCTAATCTAAGAA
ATTGAGTATATATACATAAATATACACATAAAGTGCAATAGCGTTCCGAA
ATACCATTTTTCAATTCGAATACAAACGACCGAGCCGAAGTGAAAGAGTG
TGTGTGGCAAATATTTAAATCCCATTCGCGTTCCGATTCGGAGGAGGATT
TGGCGGAGAAAGCTTGAGACACAGAGAACACACCGCAGTCAAAGAGTAAG
CAAAGTAATTGAAGCAGCCAGAAAAAATGCGTCGCTCCTCGTTCACGCCC
GTCTTCAACTTGAGCACCCAGGAGCCGCTGATCGTGGTGGAGGAATCGCA
CACCGCCGAGGATGGTGATGACTTGGAGGGTGCCGCCGGTGGATGTGATC
CCACTGCGGCCGGGACACGCCGTTCCAACAGCGATGACTCCGAACCGGAC
TCGCCGGTGAATCCCTATCTGCTTTGCCCATTTCCCGATATGCAACAGCG
ACGCAAGCATTCGCTGCCATCGCTTCAAATTACCGAGGGCATCACCGCCA
GTCAGGTGCGTCGATTGTCGGAGGTGGGCGGCGAGACTGGCGGGCTCAGT
CCCAAGGAGGTCGAGTTTCTGGCCACGCTCTCGCAGAAGGCCAATCCGAC
GGCCGGTGGACGTAGGCACTCGGTGGTCACCATATCGGCGGTGCCGCCAA
CGCTTTTCGGACGCAATCGCCGCGAGTCCATTTCCGGTGTATCCTTCAGT
GGCAGTCGCCGTGGCAGCGTCATCGCCGGACCGCCATTAACCGATCACCG
CGGCAGCGTGCACAACTTGCAGCTGGACATCATGGATGGCATCGTCCAGC
AGCGGAAGACGCGCAGCGGAAGCGGCGTCTGGACAGCGCCCGTTCTGCAG
GAGGCCGATAGCAATGTGCCCGTGCAGACATAAGCAGCTGAAGGACACGC
ACGATAGCAAGGGGGGAAAAGGACGAAAAATGGACGAATGTGGAGAAGGA
TGGATGGATGAATGGATGGCTGGATGGTTGGATGGGGATTTCTTCGACAG
ATGGACGGATGAATTCGGTTGGACACTGGGCAATACAAACAACCAAATGC
CTGGAAACTCCGAACCAACTCGAACTGCAACTGGACCTTTATTAACATTT
CGTGCTTTCCACCCGACAAAGGAAAAAAAAAACACACCCCTCACACTCTG
CCCCCCTACGATTTTCCACCGGGAAATTGCTTTTCGCGGCTGCCGCATAA
AGCAAACAAACAAACCACAAAAACCGCATGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

GH19985.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700.d 4015 CG32700.d 1956..3406 1..1452 7190 99.7 Plus
CG32700.a 3584 CG32700.a 2118..3568 1..1452 7190 99.7 Plus
CG32700-RA 1870 CG32700-RA 404..1854 1..1452 7190 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9398464..9398997 1430..897 2670 100 Minus
chrX 22417052 chrX 9401892..9402398 899..393 2535 100 Minus
chrX 22417052 chrX 9442146..9442538 394..1 1920 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9506710..9507265 1452..897 2750 99.6 Minus
X 23542271 X 9510160..9510666 899..393 2535 100 Minus
X 23542271 X 9550434..9550826 394..1 1920 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9514808..9515363 1452..897 2750 99.6 Minus
X 23527363 X 9518258..9518764 899..393 2535 100 Minus
X 23527363 X 9558532..9558924 394..1 1930 99.7 Minus
Blast to na_te.dros performed 2019-03-15 20:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
FB 1106 FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). 123..190 120..187 132 69.6 Plus

GH19985.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:26:47 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9442146..9442538 1..394 99   Minus
chrX 9398464..9398994 900..1430 92 <- Minus
chrX 9401892..9402396 395..899 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:29 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 1..657 427..1083 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:19 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 1..657 427..1083 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:19 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 1..657 427..1083 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:03 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RB 1..657 427..1083 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:53 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 1..657 427..1083 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:28 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 404..1832 1..1430 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:19 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 404..1832 1..1430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:19 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 13..1441 1..1430 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:03 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 404..1832 1..1430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:53 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
CG32700-RA 13..1441 1..1430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:47 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
X 9506732..9507262 900..1430 100 <- Minus
X 9510160..9510664 395..899 100 <- Minus
X 9550434..9550826 1..394 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:47 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
X 9506732..9507262 900..1430 100 <- Minus
X 9510160..9510664 395..899 100 <- Minus
X 9550434..9550826 1..394 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:47 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
X 9506732..9507262 900..1430 100 <- Minus
X 9510160..9510664 395..899 100 <- Minus
X 9550434..9550826 1..394 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:19 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9400765..9401295 900..1430 100 <- Minus
arm_X 9404193..9404697 395..899 100 <- Minus
arm_X 9444467..9444859 1..394 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:13 Download gff for GH19985.complete
Subject Subject Range Query Range Percent Splice Strand
X 9514830..9515360 900..1430 100 <- Minus
X 9518258..9518762 395..899 100 <- Minus
X 9558532..9558924 1..394 99   Minus

GH19985.hyp Sequence

Translation from 426 to 1082

> GH19985.hyp
MRRSSFTPVFNLSTQEPLIVVEESHTAEDGDDLEGAAGGCDPTAAGTRRS
NSDDSEPDSPVNPYLLCPFPDMQQRRKHSLPSLQITEGITASQVRRLSEV
GGETGGLSPKEVEFLATLSQKANPTAGGRRHSVVTISAVPPTLFGRNRRE
SISGVSFSGSRRGSVIAGPPLTDHRGSVHNLQLDIMDGIVQQRKTRSGSG
VWTAPVLQEADSNVPVQT*

GH19985.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PB 218 CG32700-PB 1..218 1..218 1120 100 Plus
CG32700-PA 218 CG32700-PA 1..218 1..218 1120 100 Plus
CG6123-PB 614 CG6123-PB 44..247 12..215 458 53.7 Plus
CG6123-PA 614 CG6123-PA 44..247 12..215 458 53.7 Plus

GH19985.pep Sequence

Translation from 426 to 1082

> GH19985.pep
MRRSSFTPVFNLSTQEPLIVVEESHTAEDGDDLEGAAGGCDPTAAGTRRS
NSDDSEPDSPVNPYLLCPFPDMQQRRKHSLPSLQITEGITASQVRRLSEV
GGETGGLSPKEVEFLATLSQKANPTAGGRRHSVVTISAVPPTLFGRNRRE
SISGVSFSGSRRGSVIAGPPLTDHRGSVHNLQLDIMDGIVQQRKTRSGSG
VWTAPVLQEADSNVPVQT*

GH19985.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21797-PA 219 GF21797-PA 1..219 1..218 1095 96.3 Plus
Dana\GF22512-PA 620 GF22512-PA 45..226 16..204 460 57.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18975-PA 218 GG18975-PA 1..218 1..218 1134 99.5 Plus
Dere\GG18129-PA 619 GG18129-PA 44..228 12..204 459 56.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24907-PA 217 GH24907-PA 1..217 1..218 1076 95.4 Plus
Dgri\GH17786-PA 615 GH17786-PA 53..234 15..204 440 56.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32700-PB 218 CG32700-PB 1..218 1..218 1120 100 Plus
CG32700-PA 218 CG32700-PA 1..218 1..218 1120 100 Plus
CG6123-PB 614 CG6123-PB 44..247 12..215 458 53.7 Plus
CG6123-PA 614 CG6123-PA 44..247 12..215 458 53.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15968-PA 219 GI15968-PA 1..219 1..218 996 88.7 Plus
Dmoj\GI15129-PA 607 GI15129-PA 48..228 16..204 433 55.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13129-PA 217 GL13129-PA 1..217 1..218 1032 95.9 Plus
Dper\GL27042-PA 608 GL27042-PA 35..218 13..204 451 56 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17086-PA 217 GA17086-PA 1..217 1..218 1032 95.9 Plus
Dpse\GA19371-PA 608 GA19371-PA 35..218 13..204 451 56 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11362-PA 218 GM11362-PA 1..218 1..218 1135 100 Plus
Dsec\GM22822-PA 616 GM22822-PA 39..228 7..204 453 55.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16059-PA 218 GD16059-PA 1..218 1..218 1135 100 Plus
Dsim\GD15646-PA 610 GD15646-PA 39..228 7..204 454 55.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18859-PA 216 GJ18859-PA 1..216 1..218 1061 93.1 Plus
Dvir\GJ18985-PA 626 GJ18985-PA 66..247 15..204 433 56.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25548-PA 223 GK25548-PA 1..223 1..218 1078 93.7 Plus
Dwil\GK19866-PA 611 GK19866-PA 60..241 16..204 456 57.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15448-PA 218 GE15448-PA 1..218 1..218 1126 99.1 Plus
Dyak\GE15537-PA 625 GE15537-PA 44..228 12..204 454 56.2 Plus