Clone GH20023 Report

Search the DGRC for GH20023

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:200
Well:23
Vector:pOT2
Associated Gene/TranscriptCG13458-RA
Protein status:GH20023.pep: gold
Preliminary Size:2207
Sequenced Size:2206

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13458 2001-01-01 Release 2 assignment
CG13458 2001-07-04 Blastp of sequenced clone
CG13458 2003-01-01 Sim4 clustering to Release 3
CG13458 2008-04-29 Release 5.5 accounting
CG13458 2008-08-15 Release 5.9 accounting
CG13458 2008-12-18 5.12 accounting

Clone Sequence Records

GH20023.complete Sequence

2206 bp (2206 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051551

> GH20023.complete
TTGTCAGACATCGTCAGGCCCGTGCCCAACAAAAATAGCCAGGGCATACA
TTTGGGCTTGCGGCCGCGATGAGAAGCGATGGCTAGCGGCCAATTGAATC
GAGGCGGACCGCAAGACTCCCAACCAAGAACAATGCGCATTCTTCATTGT
TCGTTCAATTGAGCAACGTGCTCTGGCTAATTTTGCACTCGAAATAAGAG
AAACGCAGCTAACATGATTCAGTCGGGGGTCCACAAAAAGAAGCCAAGGA
TTCGGAATCGCCAGCGCAACAAGATCAACCAGGTGCCACAGGATCAAGGG
GAATCTCCAGACGCAATTGCGTCTTCACTCAAAAGTAATGGCTCAAAAGC
GGCAAATGGTGTAGAAAGTAAACCTCCGGTGGAAAAGCCCTTACTTACAA
GTGGAAATTCTCTGCTTGAATCATTATCAAAAATTGGTCAAGTGGAAAAT
CCGCAAGAGAACGATACAATCCGGCTGATACAGCAACTGTTACGTAGGAA
ATTATTGGCCAAAAATAGTGCTGTGCCATCCAGCGAAAATAAGCCATCAA
CTGATCCGGTCAAAATAGTTACCCAACCAAAGGAAATCAAAAGTGAAGAA
AAGAAACCAAAGATTTCGAGTACCTCGGTTACTCCAAAACTCAAAACAGA
AGCCAAGGCATCTGGAATTTCAAAAGAAGAGGAAATAAATGATCTACTCA
AATGCTTGGGCAGCAAACTGCCAAAGGGATCTGGTGAATCCCCAGCAGCC
GCGTTATTCAGCAATCTTGGAAAGCTTTTCAGCCAAGCGCCGCCCAGCGA
TGTCGAGTCATCCGATGAGGAAGTGGAGGAGTATGTGGAGTACATCTATA
AGCCAAGGCAATATTTTATGGCCTCACTGTGCAATTTCTGCAAGTCGGAT
CTGTGCGGCCAGAATCGGATACCCTGCTCCCGCTGTGGACTGAGCTACTA
CTGCAGCAGTGGGCACATGAAAGACGACCAGGAGCACCGCCAGCTGTGCT
ACGCCCTGCGCCAGACGGTGGACCGCAATGGTCACGAGATGTTCTACAAG
TGCGGCGACTTCAGTGACGAACAGTTCCGTTCCTTCCGGATCGTGTGCAT
TCGCCAGGTGGAGAAGGAGATGAATCGTCAGCTCAGCGCAACGGAGAGAG
AGTTGCTCCTATTTCCACTGATCTGCGCCGACTCAAAGTGCCGGGAGCAT
CGCTTTAAACGTCTATCCATGTGCGGTGGATGTGGCGAGGTGGCTTTCTG
CAAGGATAAGCCGGAGCACCGAGGCAAGGAGCACGCCAAGTGGTGTGGAG
CCTATCAGATTTTCAAGGCCTTCATCATGTTTCAGGAACAGTTCGGCCGC
ATGGAGCCATCACTGCCCAGTAAGATTCTTAGAGAGCTGCCCATGGCTTG
CTCCAACACCAAGCAGATGATGAAGAAGCTAAGCTTTAATGTTACCAATG
AGTGTGAGTACGCAGCACTTACCCAGGTGTCCACTGGCCCATTAACTGCC
TGGTTTGCCTTGAAACTTTGCGAGCGCCTCAGAAACTGCGAGGAGATGAC
TCTTCACTTAATTGGAGCCGAGATCGAATTTGAGGCGGATATGCTGCAGA
AATGGGAACTCTTCCTGCTCCACATAACGCCAGCGGTGAAAACTCTGAAT
GTGGTCTTTGTTGGACCTGAACTTAATCCTAATAATATATCCTTTGAACA
GCTAAAGAAAATCAAATGCTGCCGTTTCTGCAGAAAAGCCCAGAGAACGG
TTAACTATCATTTTGAGAATAGTTTATATCACGATTACTGCAGAGAATCG
CACTTTCTTCAGCCGAATTTGATTTGCTTCTTTAACTGCGGTCTGTACCG
ATCAACTGGTTTCGCTCTGGAGGATACTTGGCCAGATACCATTCAAGCTG
CACTCAATCTCAACTGCCCCATCGTAGTTACTTCCTATACAAAATACGAG
GCCCCTTTGGATATGATTCAATTTATTAACCAATCGAATCGACACTTAAA
TGTCGTAATGCCGCCAACTGTAAATCCGTTTTCCTCGGAAAAGCCAGAAC
GTAATTTTATATCAGATAATGAAGCGTCTTTTATGTTTAAGAACTTTTAC
TGTTTTGTTGTTGATTAATCGCAGTCCACACCTTAGTTTTTTTTTAATAA
AAAGACAAATATCGAACAATTCTGATTTGGACAAGGTCAAAAAAAAAAAA
AAAAAA

GH20023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-RA 2208 CG13458-RA 1..2190 1..2190 10950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15103636..15104363 1..728 3625 99.9 Plus
chr3L 24539361 chr3L 15105117..15105525 1030..1438 2030 99.8 Plus
chr3L 24539361 chr3L 15106087..15106452 1823..2188 1770 98.9 Plus
chr3L 24539361 chr3L 15105586..15105862 1439..1715 1370 99.6 Plus
chr3L 24539361 chr3L 15104422..15104580 727..885 795 100 Plus
chr3L 24539361 chr3L 15104902..15105048 886..1032 735 100 Plus
chr3L 24539361 chr3L 15105923..15106029 1716..1822 535 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15113557..15114284 1..728 3640 100 Plus
3L 28110227 3L 15115038..15115446 1030..1438 2045 100 Plus
3L 28110227 3L 15116008..15116375 1823..2190 1840 100 Plus
3L 28110227 3L 15115507..15115783 1439..1715 1385 100 Plus
3L 28110227 3L 15114343..15114501 727..885 795 100 Plus
3L 28110227 3L 15114823..15114969 886..1032 735 100 Plus
3L 28110227 3L 15115844..15115950 1716..1822 535 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15106657..15107384 1..728 3640 100 Plus
3L 28103327 3L 15108138..15108546 1030..1438 2045 100 Plus
3L 28103327 3L 15109108..15109475 1823..2190 1840 100 Plus
3L 28103327 3L 15108607..15108883 1439..1715 1385 100 Plus
3L 28103327 3L 15107443..15107601 727..885 795 100 Plus
3L 28103327 3L 15107923..15108069 886..1032 735 100 Plus
3L 28103327 3L 15108944..15109050 1716..1822 535 100 Plus
Blast to na_te.dros performed on 2019-03-17 00:03:48 has no hits.

GH20023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:04:41 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15105586..15105862 1439..1715 99 -> Plus
chr3L 15103636..15104362 1..727 99 -> Plus
chr3L 15104423..15104580 728..885 100 -> Plus
chr3L 15104902..15105046 886..1030 100 -> Plus
chr3L 15105118..15105525 1031..1438 99 -> Plus
chr3L 15105923..15106029 1716..1822 100 -> Plus
chr3L 15106087..15106452 1823..2188 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:54 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..1905 214..2118 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:06 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..1905 214..2118 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:07 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..1905 214..2118 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:03 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..1905 214..2118 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:08:53 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..1905 214..2118 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:27 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..2188 1..2188 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:06 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..2188 1..2188 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:07 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..2188 1..2188 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:03 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..2188 1..2188 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:53 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..2188 1..2188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:41 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15116008..15116373 1823..2188 100   Plus
3L 15113557..15114283 1..727 100 -> Plus
3L 15114344..15114501 728..885 100 -> Plus
3L 15114823..15114967 886..1030 100 -> Plus
3L 15115039..15115446 1031..1438 100 -> Plus
3L 15115507..15115783 1439..1715 100 -> Plus
3L 15115844..15115950 1716..1822 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:41 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15116008..15116373 1823..2188 100   Plus
3L 15113557..15114283 1..727 100 -> Plus
3L 15114344..15114501 728..885 100 -> Plus
3L 15114823..15114967 886..1030 100 -> Plus
3L 15115039..15115446 1031..1438 100 -> Plus
3L 15115507..15115783 1439..1715 100 -> Plus
3L 15115844..15115950 1716..1822 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:41 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15116008..15116373 1823..2188 100   Plus
3L 15113557..15114283 1..727 100 -> Plus
3L 15114344..15114501 728..885 100 -> Plus
3L 15114823..15114967 886..1030 100 -> Plus
3L 15115039..15115446 1031..1438 100 -> Plus
3L 15115507..15115783 1439..1715 100 -> Plus
3L 15115844..15115950 1716..1822 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:07 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15108607..15108883 1439..1715 100 -> Plus
arm_3L 15108944..15109050 1716..1822 100 -> Plus
arm_3L 15108139..15108546 1031..1438 100 -> Plus
arm_3L 15106657..15107383 1..727 100 -> Plus
arm_3L 15107444..15107601 728..885 100 -> Plus
arm_3L 15107923..15108067 886..1030 100 -> Plus
arm_3L 15109108..15109473 1823..2188 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:51 Download gff for GH20023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15106657..15107383 1..727 100 -> Plus
3L 15107444..15107601 728..885 100 -> Plus
3L 15107923..15108067 886..1030 100 -> Plus
3L 15108139..15108546 1031..1438 100 -> Plus
3L 15108607..15108883 1439..1715 100 -> Plus
3L 15108944..15109050 1716..1822 100 -> Plus
3L 15109108..15109473 1823..2188 100   Plus

GH20023.pep Sequence

Translation from 213 to 2117

> GH20023.pep
MIQSGVHKKKPRIRNRQRNKINQVPQDQGESPDAIASSLKSNGSKAANGV
ESKPPVEKPLLTSGNSLLESLSKIGQVENPQENDTIRLIQQLLRRKLLAK
NSAVPSSENKPSTDPVKIVTQPKEIKSEEKKPKISSTSVTPKLKTEAKAS
GISKEEEINDLLKCLGSKLPKGSGESPAAALFSNLGKLFSQAPPSDVESS
DEEVEEYVEYIYKPRQYFMASLCNFCKSDLCGQNRIPCSRCGLSYYCSSG
HMKDDQEHRQLCYALRQTVDRNGHEMFYKCGDFSDEQFRSFRIVCIRQVE
KEMNRQLSATERELLLFPLICADSKCREHRFKRLSMCGGCGEVAFCKDKP
EHRGKEHAKWCGAYQIFKAFIMFQEQFGRMEPSLPSKILRELPMACSNTK
QMMKKLSFNVTNECEYAALTQVSTGPLTAWFALKLCERLRNCEEMTLHLI
GAEIEFEADMLQKWELFLLHITPAVKTLNVVFVGPELNPNNISFEQLKKI
KCCRFCRKAQRTVNYHFENSLYHDYCRESHFLQPNLICFFNCGLYRSTGF
ALEDTWPDTIQAALNLNCPIVVTSYTKYEAPLDMIQFINQSNRHLNVVMP
PTVNPFSSEKPERNFISDNEASFMFKNFYCFVVD*

GH20023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23685-PA 623 GF23685-PA 1..623 1..634 2420 69 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15720-PA 632 GG15720-PA 1..632 1..634 2910 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14830-PA 586 GH14830-PA 5..586 7..634 1930 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-PA 634 CG13458-PA 1..634 1..634 3364 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13935-PA 580 GI13935-PA 4..579 8..633 1909 58.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24724-PA 595 GL24724-PA 1..595 1..634 2267 67.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12301-PA 604 GA12301-PA 1..604 1..634 2399 70.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25506-PA 633 GM25506-PA 1..633 1..634 3147 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14524-PA 633 GD14524-PA 1..633 1..634 3170 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13724-PA 583 GJ13724-PA 5..583 7..634 1954 58.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17770-PA 591 GK17770-PA 58..591 78..634 2193 70.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22051-PA 634 GE22051-PA 5..634 4..634 2982 90.5 Plus

GH20023.hyp Sequence

Translation from 213 to 2117

> GH20023.hyp
MIQSGVHKKKPRIRNRQRNKINQVPQDQGESPDAIASSLKSNGSKAANGV
ESKPPVEKPLLTSGNSLLESLSKIGQVENPQENDTIRLIQQLLRRKLLAK
NSAVPSSENKPSTDPVKIVTQPKEIKSEEKKPKISSTSVTPKLKTEAKAS
GISKEEEINDLLKCLGSKLPKGSGESPAAALFSNLGKLFSQAPPSDVESS
DEEVEEYVEYIYKPRQYFMASLCNFCKSDLCGQNRIPCSRCGLSYYCSSG
HMKDDQEHRQLCYALRQTVDRNGHEMFYKCGDFSDEQFRSFRIVCIRQVE
KEMNRQLSATERELLLFPLICADSKCREHRFKRLSMCGGCGEVAFCKDKP
EHRGKEHAKWCGAYQIFKAFIMFQEQFGRMEPSLPSKILRELPMACSNTK
QMMKKLSFNVTNECEYAALTQVSTGPLTAWFALKLCERLRNCEEMTLHLI
GAEIEFEADMLQKWELFLLHITPAVKTLNVVFVGPELNPNNISFEQLKKI
KCCRFCRKAQRTVNYHFENSLYHDYCRESHFLQPNLICFFNCGLYRSTGF
ALEDTWPDTIQAALNLNCPIVVTSYTKYEAPLDMIQFINQSNRHLNVVMP
PTVNPFSSEKPERNFISDNEASFMFKNFYCFVVD*

GH20023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-PA 634 CG13458-PA 1..634 1..634 3364 100 Plus