Clone GH20044 Report

Search the DGRC for GH20044

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:200
Well:44
Vector:pOT2
Associated Gene/TranscriptHs2st-RA
Protein status:GH20044.pep: gold
Preliminary Size:1726
Sequenced Size:1681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10234 2001-01-01 Release 2 assignment
CG10234 2001-09-19 Blastp of sequenced clone
CG10234 2003-01-01 Sim4 clustering to Release 3
Hs2st 2008-04-29 Release 5.5 accounting
Hs2st 2008-08-15 Release 5.9 accounting
Hs2st 2008-12-18 5.12 accounting

Clone Sequence Records

GH20044.complete Sequence

1681 bp (1681 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058422

> GH20044.complete
CACTGTCCAGCAGCTGCTGACCAACACTGCTCGATGTTGGTTGCAGAAAA
AAAACAAGGAAAACAACGACCTGAGATTATGCTGAAATAAATACGCTGAT
ATGAGCTACCGTGCTGACCTGTAGGGCAAACCGACACGAGGCATGTTTAG
GAAACTGCTTAAGATGTGGATTCTGCTCCGACCCACCCACTGGCTGATCC
TGATAGCCCTGTGCGCGGTCACCTGTGCAGGTTACTGGTTGCTTTGGTCA
GAGATTCGCCTGGAACATGCCTTCAAGCCGCTTTCCAAGCTGGGCGATTC
TCTGAGCCCAGATCAGCATGCCTCGTCCACCACCGATGACTTTGACTTCG
AGGAGCACCTAGTGGTGCTTTACAATCGCGTACCGAAAACGGGATCCACC
AGCTTTGTTAACATAGCATACGATCTGTGCAAGCCCAATAAATTCCATGT
GCTGCACATCAATGTCACTGCCAACATGCACGTCCTCTCGCTTCCCAATC
AAATCCAATTCGTGCGCAATGTTTCCAGGTGGCACGAGATGAAGCCAGCT
CTTTATCACGGCCACATGGCCTTCCTAGACTTCTCAAAATTCCAAATCGC
CCACAAGCCCATCTACATCAATTTGGTGCGCAAACCGCTCGACAGACTTG
TCTCCTACTATTACTTTCTACGCTTTGGCGACAACTACCGACCGAATTTA
GTCCGCAAGAAGGCGGGCAATAAAATTACCTTCGATGAGTGCGTGGTGCA
GAAACAACCCGACTGTGATCCCAAAAACATGTGGCTGCAGATACCCTTCT
TCTGTGGCCATGCAGCCGAGTGCTGGGAACCCGGCAGCAGTTGGGCCTTG
GACCAGGCCAAGCGCAATCTAGTCAACGAATACTTCCTAGTCGGAGTCAC
AGAGCAGATGTACGAGTTTGTGGATCTGCTCGAGAGATCCCTTCCAAGAA
TTTTTCACGGCTTTCGTGAGCACTATCATAATTCAAACAAATCTCATCTG
CGGGTGACATCTTCCAAGCTTCCGCCCAGCGAATCGACAATTAAATCCAT
TCAAAAGACAAAAATCTGGCAAATGGAAAACGATCTGTACGATTTCGCGC
TGGCCCAATTCGAGTTCAACAAGAAGAAGCTCATGCAGCCGGACAACAAG
CACGTGCAGAAATTCATGTACGAGAAGATTCGGCCCAAATGATTGCAGAG
GAGGCGACGGAGTCGCAGAGCGAGGATTCGGCCGACTCCAGTGATCTAAC
CAGGAGTCTCCGACAATTGTATTGTAAATACGTAATTCTCCTTCGCATAG
ATTTGATCTGTACTTAAGAGTAACTCATCCGTACACTTAAGCGCTACCTA
AGACTTTAGCATTGAATATCGTTGACATATTACTAACCCAAACCTTTTGT
ACGTAGTCTAAGCTTTAAACGTATAAAACAGGCGAGAACGCTTTTGTAGT
TCATCGTAAGCAATATCTAGCAACAATTGTCTGCACAATATCTCTATATG
ATTAGTCAAATGTACGTTTTATACTCGACAATACAACGGAATGAATGGAT
GAATTGAATCGATATGCATACGTAGAACTAGAAATAGGTGTAAATTCATA
TGTAATCGACTCTCATTGTTTGTAACTCTCATAGGCTAGGCCATAAATCT
GAATTTGACATTCAAAAAAAAAAAAAAAAAA

GH20044.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-RA 1831 Hs2st-RA 140..1805 1..1666 8330 100 Plus
Hs2st.a 2244 Hs2st.a 88..1753 1..1666 8330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19441367..19442083 1663..947 3585 100 Minus
chr2L 23010047 chr2L 19442643..19442962 588..269 1600 100 Minus
chr2L 23010047 chr2L 19443027..19443295 269..1 1330 99.6 Minus
chr2L 23010047 chr2L 19442165..19442385 948..728 1105 100 Minus
chr2L 23010047 chr2L 19442446..19442584 727..589 695 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19442830..19443549 1666..947 3600 100 Minus
2L 23513712 2L 19444109..19444428 588..269 1600 100 Minus
2L 23513712 2L 19444493..19444761 269..1 1345 100 Minus
2L 23513712 2L 19443631..19443851 948..728 1105 100 Minus
2L 23513712 2L 19443912..19444050 727..589 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19442830..19443549 1666..947 3600 100 Minus
2L 23513712 2L 19444109..19444428 588..269 1600 100 Minus
2L 23513712 2L 19444493..19444761 269..1 1345 100 Minus
2L 23513712 2L 19443631..19443851 948..728 1105 100 Minus
2L 23513712 2L 19443912..19444050 727..589 695 100 Minus
Blast to na_te.dros performed 2019-03-15 12:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 1774..1823 1525..1476 115 70 Minus

GH20044.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:42:28 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19441367..19442081 949..1663 100 <- Minus
chr2L 19442165..19442385 728..948 100 <- Minus
chr2L 19442446..19442584 589..727 100 <- Minus
chr2L 19442643..19442961 270..588 100 <- Minus
chr2L 19443027..19443295 1..269 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:55 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 143..1192 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:22 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 143..1192 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:48:49 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 143..1192 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:37:05 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 143..1192 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:08:12 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1050 143..1192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:56:05 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1663 1..1663 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:22 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1663 1..1663 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:48:49 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1663 1..1663 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:37:05 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1663 1..1663 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:08:12 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
Hs2st-RA 1..1652 12..1663 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:28 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19443912..19444050 589..727 100 <- Minus
2L 19442833..19443547 949..1663 100 <- Minus
2L 19443631..19443851 728..948 100 <- Minus
2L 19444109..19444427 270..588 100 <- Minus
2L 19444493..19444761 1..269 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:28 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19443912..19444050 589..727 100 <- Minus
2L 19442833..19443547 949..1663 100 <- Minus
2L 19443631..19443851 728..948 100 <- Minus
2L 19444109..19444427 270..588 100 <- Minus
2L 19444493..19444761 1..269 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:42:28 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19443912..19444050 589..727 100 <- Minus
2L 19442833..19443547 949..1663 100 <- Minus
2L 19443631..19443851 728..948 100 <- Minus
2L 19444109..19444427 270..588 100 <- Minus
2L 19444493..19444761 1..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:48:49 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19442833..19443547 949..1663 100 <- Minus
arm_2L 19443631..19443851 728..948 100 <- Minus
arm_2L 19443912..19444050 589..727 100 <- Minus
arm_2L 19444109..19444427 270..588 100 <- Minus
arm_2L 19444493..19444761 1..269 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:16 Download gff for GH20044.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19443912..19444050 589..727 100 <- Minus
2L 19444493..19444761 1..269 100   Minus
2L 19444109..19444427 270..588 100 <- Minus
2L 19442833..19443547 949..1663 100 <- Minus
2L 19443631..19443851 728..948 100 <- Minus

GH20044.pep Sequence

Translation from 142 to 1191

> GH20044.pep
MFRKLLKMWILLRPTHWLILIALCAVTCAGYWLLWSEIRLEHAFKPLSKL
GDSLSPDQHASSTTDDFDFEEHLVVLYNRVPKTGSTSFVNIAYDLCKPNK
FHVLHINVTANMHVLSLPNQIQFVRNVSRWHEMKPALYHGHMAFLDFSKF
QIAHKPIYINLVRKPLDRLVSYYYFLRFGDNYRPNLVRKKAGNKITFDEC
VVQKQPDCDPKNMWLQIPFFCGHAAECWEPGSSWALDQAKRNLVNEYFLV
GVTEQMYEFVDLLERSLPRIFHGFREHYHNSNKSHLRVTSSKLPPSESTI
KSIQKTKIWQMENDLYDFALAQFEFNKKKLMQPDNKHVQKFMYEKIRPK*

GH20044.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15842-PA 355 GF15842-PA 1..355 1..349 1760 91.9 Plus
Dana\GF10771-PA 319 GF10771-PA 29..287 74..318 260 28.7 Plus
Dana\GF10765-PA 342 GF10765-PA 25..305 65..318 248 29.5 Plus
Dana\GF10766-PA 311 GF10766-PA 27..294 69..319 231 27.9 Plus
Dana\GF10769-PA 241 GF10769-PA 20..240 74..280 223 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21631-PA 349 GG21631-PA 1..349 1..349 1839 96.8 Plus
Dere\GG13413-PA 516 GG13413-PA 227..485 74..318 256 28.4 Plus
Dere\GG13411-PA 396 GG13411-PA 114..374 74..318 218 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13467-PA 351 GH13467-PA 1..351 1..349 1524 79.7 Plus
Dgri\GH19644-PA 154 GH19644-PA 1..154 1..149 508 65.2 Plus
Dgri\GH14414-PA 306 GH14414-PA 19..277 74..318 257 28.7 Plus
Dgri\GH14412-PA 303 GH14412-PA 6..233 53..271 241 29.5 Plus
Dgri\GH14407-PA 421 GH14407-PA 28..356 14..293 236 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-PA 349 CG10234-PA 1..349 1..349 1898 100 Plus
pip-PA 413 CG9614-PA 124..382 74..318 256 28.4 Plus
pip-PN 513 CG9614-PN 169..476 37..318 246 26.8 Plus
pip-PL 514 CG9614-PL 170..477 37..318 246 26.8 Plus
pip-PC 403 CG9614-PC 124..347 74..282 238 28.9 Plus
pip-PI 358 CG9614-PI 124..339 74..275 237 30.6 Plus
pip-PG 407 CG9614-PG 124..383 74..318 228 28.4 Plus
pip-PD 418 CG9614-PD 109..403 54..340 219 26.6 Plus
pip-PH 405 CG9614-PH 101..382 45..318 217 26.5 Plus
pip-PK 406 CG9614-PK 125..384 75..318 214 27.4 Plus
pip-PJ 401 CG9614-PJ 125..401 75..337 198 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17219-PA 291 GI17219-PA 1..284 1..280 1218 80.6 Plus
Dmoj\GI13544-PA 306 GI13544-PA 19..277 74..318 253 28.4 Plus
Dmoj\GI13537-PA 371 GI13537-PA 52..331 51..318 240 28.2 Plus
Dmoj\GI13539-PA 314 GI13539-PA 20..241 74..281 230 29.8 Plus
Dmoj\GI13541-PA 284 GI13541-PA 4..262 75..319 219 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21106-PA 314 GL21106-PA 1..314 8..349 1460 79.6 Plus
Dper\GL20909-PA 532 GL20909-PA 243..502 74..319 263 28.6 Plus
Dper\GL20902-PA 357 GL20902-PA 40..319 51..318 240 29.3 Plus
Dper\GL20906-PA 471 GL20906-PA 22..243 74..281 240 30.4 Plus
Dper\GL20901-PA 477 GL20901-PA 193..434 74..292 224 30.5 Plus
Dper\GL20906-PA 471 GL20906-PA 317..457 74..208 150 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10178-PA 348 GA10178-PA 1..348 8..349 1688 89.4 Plus
Dpse\GA28240-PA 308 GA28240-PA 19..277 74..318 264 28.7 Plus
Dpse\GA28238-PA 1157 GA28238-PA 22..243 74..281 239 30.4 Plus
Dpse\GA28238-PA 1157 GA28238-PA 317..562 74..303 236 29.8 Plus
Dpse\GA28236-PA 301 GA28236-PA 22..284 74..319 227 28.3 Plus
Dpse\GA28237-PA 307 GA28237-PA 26..290 71..323 225 27.9 Plus
Dpse\GA28238-PA 1157 GA28238-PA 915..1131 74..276 218 29.2 Plus
Dpse\GA28238-PA 1157 GA28238-PA 597..825 52..271 195 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17009-PA 349 GM17009-PA 1..349 1..349 1881 99.4 Plus
Dsec\GM14880-PA 308 GM14880-PA 19..278 74..319 258 28.3 Plus
Dsec\GM19105-PA 697 GM19105-PA 89..335 60..279 255 29.8 Plus
Dsec\GM19105-PA 697 GM19105-PA 418..679 74..318 236 26.8 Plus
Dsec\GM18995-PA 407 GM18995-PA 125..385 74..318 214 29 Plus
Dsec\GM14877-PA 284 GM14877-PA 4..262 75..319 210 26.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21759-PA 349 GD21759-PA 1..349 1..349 1880 99.4 Plus
Dsim\GD12287-PA 516 GD12287-PA 227..485 74..318 256 28.4 Plus
Dsim\GD12286-PA 397 GD12286-PA 115..375 74..318 210 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17976-PA 344 GJ17976-PA 1..344 8..349 1552 82.8 Plus
Dvir\GJ11902-PA 306 GJ11902-PA 19..277 74..318 253 28.4 Plus
Dvir\GJ11896-PA 392 GJ11896-PA 73..352 51..318 249 28.2 Plus
Dvir\GJ11895-PA 406 GJ11895-PA 28..384 14..318 248 27.5 Plus
Dvir\GJ11899-PA 616 GJ11899-PA 298..578 38..303 229 26.2 Plus
Dvir\GJ11899-PA 616 GJ11899-PA 23..244 74..281 225 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18194-PA 348 GK18194-PA 1..348 1..349 1581 84.9 Plus
Dwil\GK19630-PA 301 GK19630-PA 19..278 74..319 254 28.7 Plus
Dwil\GK19555-PA 668 GK19555-PA 67..321 51..293 233 28.3 Plus
Dwil\GK19608-PA 616 GK19608-PA 323..551 52..271 230 28 Plus
Dwil\GK19555-PA 668 GK19555-PA 390..650 74..318 228 27.5 Plus
Dwil\GK19587-PA 319 GK19587-PA 25..278 74..312 221 27.3 Plus
Dwil\GK19608-PA 616 GK19608-PA 18..263 62..295 219 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Hs2st-PA 349 GE12651-PA 1..349 1..349 1860 98 Plus
Dyak\GE22927-PA 308 GE22927-PA 19..278 74..319 258 28.3 Plus
Dyak\GE22508-PA 1311 GE22508-PA 1022..1281 74..319 256 28.3 Plus
Dyak\GE22506-PA 968 GE22506-PA 86..374 59..318 253 29.6 Plus
Dyak\GE22508-PA 1311 GE22508-PA 503..741 53..274 235 29.4 Plus
Dyak\GE22508-PA 1311 GE22508-PA 264..515 49..292 221 27.1 Plus
Dyak\GE22925-PA 220 GE22925-PA 42..201 132..275 217 34.4 Plus
Dyak\GE22506-PA 968 GE22506-PA 418..638 74..279 210 28.5 Plus
Dyak\GE22508-PA 1311 GE22508-PA 49..247 136..319 197 30 Plus
Dyak\GE22508-PA 1311 GE22508-PA 759..1021 74..312 193 27 Plus
Dyak\GE22506-PA 968 GE22506-PA 673..911 71..296 173 27.7 Plus

GH20044.hyp Sequence

Translation from 142 to 1191

> GH20044.hyp
MFRKLLKMWILLRPTHWLILIALCAVTCAGYWLLWSEIRLEHAFKPLSKL
GDSLSPDQHASSTTDDFDFEEHLVVLYNRVPKTGSTSFVNIAYDLCKPNK
FHVLHINVTANMHVLSLPNQIQFVRNVSRWHEMKPALYHGHMAFLDFSKF
QIAHKPIYINLVRKPLDRLVSYYYFLRFGDNYRPNLVRKKAGNKITFDEC
VVQKQPDCDPKNMWLQIPFFCGHAAECWEPGSSWALDQAKRNLVNEYFLV
GVTEQMYEFVDLLERSLPRIFHGFREHYHNSNKSHLRVTSSKLPPSESTI
KSIQKTKIWQMENDLYDFALAQFEFNKKKLMQPDNKHVQKFMYEKIRPK*

GH20044.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hs2st-PA 349 CG10234-PA 1..349 1..349 1898 100 Plus
pip-PA 413 CG9614-PA 124..382 74..318 256 28.4 Plus
pip-PN 513 CG9614-PN 169..476 37..318 246 26.8 Plus
pip-PL 514 CG9614-PL 170..477 37..318 246 26.8 Plus
pip-PI 358 CG9614-PI 124..339 74..275 237 30.6 Plus