Clone GH20064 Report

Search the DGRC for GH20064

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:200
Well:64
Vector:pOT2
Associated Gene/TranscriptCG12375-RA
Protein status:GH20064.pep: gold
Preliminary Size:1283
Sequenced Size:1143

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12375 2001-01-01 Release 2 assignment
CG12375 2002-06-12 Blastp of sequenced clone
CG12375 2003-01-01 Sim4 clustering to Release 3
CG12375 2008-04-29 Release 5.5 accounting
CG12375 2008-08-15 Release 5.9 accounting
CG12375 2008-12-18 5.12 accounting

Clone Sequence Records

GH20064.complete Sequence

1143 bp (1143 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122121

> GH20064.complete
CCAAAGTTCATTAAAACCCCGAAAAAATTGGACCCTAATATTATTTTCCT
TAAGTGTTTCATTTCCCTCCTTAATTTATATTTAGTGAACGAAGAGATGG
CGCTGATTCCGGCTGTTACCAGACTCACCTCCTCCGTAATTCGGATACTG
GGTTGTAATCCCAGTGCCATGACGCTCCAGGGCACCAATACGTACCTCCT
CGGCAGTGGCAGTAGGAGAATCTTGATCGACACTGGTGACGAAGACGTGC
CGCAGTACATCGCTCACCTGGGAGATGTGCTACAGCAGGAAAAGGCCTCC
ATCGACACCATCCTGCTGACCCACTGGCACCACGACCATGTCGGCGGTGT
AAAGAGCATTGTGGGTACTAAATTGGCCGAAAAGGATTGCCGCGTATTCA
AGTTTGGGCGTACAGATGCTCCAGATGTGTGCCCCGAGATACCGACGGAT
ATCAAACTCCATCCGCTAGCACACAACCAAGAGTTCACCACGGAGGGGGC
GAATGTGCGGGTGGTTCACACACCCGGTCACACCACTGATCATGTGGTGC
TGGCCATGAACGAGGGCACACTCTTCAGCGGCGATTGCATCCTTGGCGAG
GGCACCGCCGTCTTCGAGGACCTATTTGAGTACATGAAAAGCCTGGAGAA
GATACTAGACATCAAGCCGCAGCGTATCTTTCCAGGCCATGGCAATGTCA
TTGAGGAACCAATTGGCAAGATTGAGTACTACATTAACCATCGCAACCAG
CGAGAACAGCAAATCCTGCAGTTCTTCGTTCAGCGGCCCAACGAAAACTT
GCAGGCTATGGACGTCGTGAAGGTGGTCTACAAGGAGACACCAGAAAACC
TCTGGCCCGCCGCCGCCTATAACGTGAACCACCACCTAAGCAAGCTGGAG
AAGGAGGGAAAGCTGCGGGTCAGCAAGTCTGCGGATGAAGAGTTCTATGT
GTACCAGCCAACCAGTGCGCTCTAAATTCTTGATTTTCCTTTTTTATTTT
GTTGAGCGTATATAACTATTTGTTTGTAAAAAATTGTTAAATAATTTTCA
TTTTCTTTATACCTGGTTATCACACTTTATGGTGTCGTCTAATAACATAT
TCCACAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH20064.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12375-RA 1210 CG12375-RA 63..1175 1..1113 5565 100 Plus
CG12375.a 1168 CG12375.a 65..1168 1..1110 5435 99.4 Plus
CG8673.b 1329 CG8673.b 1195..1329 1113..979 675 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8124700..8125730 1110..80 5140 99.9 Minus
chr2L 23010047 chr2L 8125789..8125867 79..1 395 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8125665..8126698 1113..80 5170 100 Minus
2L 23513712 2L 8126757..8126835 79..1 395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8125665..8126698 1113..80 5170 100 Minus
2L 23513712 2L 8126757..8126835 79..1 395 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:21:08 has no hits.

GH20064.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:22:04 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8124700..8125730 80..1110 99 <- Minus
chr2L 8125789..8125867 1..79 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:49:59 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 1..879 97..975 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:29 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 1..879 97..975 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:06 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 1..879 97..975 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:11 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 1..879 97..975 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:30:34 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 1..879 97..975 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:50:36 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 25..1134 1..1110 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:29 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 42..1151 1..1110 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:06 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 56..1165 1..1110 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:11 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 25..1134 1..1110 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:34 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12375-RA 56..1165 1..1110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:04 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8125668..8126698 80..1110 100 <- Minus
2L 8126757..8126835 1..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:04 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8125668..8126698 80..1110 100 <- Minus
2L 8126757..8126835 1..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:04 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8125668..8126698 80..1110 100 <- Minus
2L 8126757..8126835 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:06 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8125668..8126698 80..1110 100 <- Minus
arm_2L 8126757..8126835 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:05 Download gff for GH20064.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8125668..8126698 80..1110 100 <- Minus
2L 8126757..8126835 1..79 100   Minus

GH20064.hyp Sequence

Translation from 0 to 974

> GH20064.hyp
PKFIKTPKKLDPNIIFLKCFISLLNLYLVNEEMALIPAVTRLTSSVIRIL
GCNPSAMTLQGTNTYLLGSGSRRILIDTGDEDVPQYIAHLGDVLQQEKAS
IDTILLTHWHHDHVGGVKSIVGTKLAEKDCRVFKFGRTDAPDVCPEIPTD
IKLHPLAHNQEFTTEGANVRVVHTPGHTTDHVVLAMNEGTLFSGDCILGE
GTAVFEDLFEYMKSLEKILDIKPQRIFPGHGNVIEEPIGKIEYYINHRNQ
REQQILQFFVQRPNENLQAMDVVKVVYKETPENLWPAAAYNVNHHLSKLE
KEGKLRVSKSADEEFYVYQPTSAL*

GH20064.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12375-PA 292 CG12375-PA 1..292 33..324 1536 100 Plus

GH20064.pep Sequence

Translation from 96 to 974

> GH20064.pep
MALIPAVTRLTSSVIRILGCNPSAMTLQGTNTYLLGSGSRRILIDTGDED
VPQYIAHLGDVLQQEKASIDTILLTHWHHDHVGGVKSIVGTKLAEKDCRV
FKFGRTDAPDVCPEIPTDIKLHPLAHNQEFTTEGANVRVVHTPGHTTDHV
VLAMNEGTLFSGDCILGEGTAVFEDLFEYMKSLEKILDIKPQRIFPGHGN
VIEEPIGKIEYYINHRNQREQQILQFFVQRPNENLQAMDVVKVVYKETPE
NLWPAAAYNVNHHLSKLEKEGKLRVSKSADEEFYVYQPTSAL*

GH20064.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15132-PA 292 GF15132-PA 1..292 1..292 1385 87.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23476-PA 292 GG23476-PA 1..292 1..292 1517 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17641-PA 292 GH17641-PA 1..292 1..292 1189 73.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12375-PA 292 CG12375-PA 1..292 1..292 1536 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16080-PA 297 GI16080-PA 1..297 1..292 1111 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22417-PA 292 GL22417-PA 1..290 1..290 1250 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11591-PA 292 GA11591-PA 1..290 1..290 1244 76.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13170-PA 292 GM13170-PA 1..292 1..292 1544 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22440-PA 292 GD22440-PA 1..292 1..292 1541 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15728-PA 292 GJ15728-PA 1..292 1..292 1241 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20116-PA 293 GK20116-PA 1..293 1..292 1226 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11184-PA 292 GE11184-PA 1..292 1..292 1516 96.2 Plus