Clone GH20068 Report

Search the DGRC for GH20068

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:200
Well:68
Vector:pOT2
Associated Gene/TranscriptHs3st-A-RA
Protein status:GH20068.pep: gold
Preliminary Size:5250
Sequenced Size:5574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15074 2001-01-01 Release 2 assignment
CG15075 2001-01-01 Release 2 assignment
CG15076 2001-01-01 Release 2 assignment
CG33147 2002-06-10 Blastp of sequenced clone
CG33147 2003-01-01 Sim4 clustering to Release 3
Hs3st-A 2008-04-29 Release 5.5 accounting
Hs3st-A 2008-08-15 Release 5.9 accounting
Hs3st-A 2008-12-18 5.12 accounting

Clone Sequence Records

GH20068.complete Sequence

5574 bp (5574 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121626

> GH20068.complete
CGTCGTGGAGAGCAGACGTGCGCTTCTGCCACTGCGAAATCCTCGCTCTC
GGGCAGCTGTATTCAACCAACACATGGCCGACACACGGACACTCACACAA
ACACGCAATCGGACACGCACACCTGTACACCCAGCGCGCGCGCAAATCGC
CGAAATTAAAGCAAAGCGAAACGAAAAATGCTTAAATGTCCACGTGAAAC
GGTGCACAAAATAATCGAATAACGAAAACAAATCGAATCAGTGAAATTAA
AGTGGAGTTCTTGTTTTTTTTGGAAAAAATCAATGCCGTTAATCGACGCA
CACGGATACACACATAAACGCACACGTGTGCTTCAGAAGCCAAAACACAA
CGATACACTAAAACACACACACACACGTGCATACAGAAGGCCTAACAAAG
TGAAAGTAACGAAATTAGCAGCACAATTTTGAGACAACAAAAAAAAACAA
GAAAAGAGTTTAGGGCTAAAATATAAGTAGATAAAAAACAAGCGGCAACA
GCAGCCGCCAACGCAAAAACAACCTGAGCAAGATAAACACGCAAAACAAA
GCGAACTGGGTCAGTGAGCGAAAAGGAGGAGAAGGAGAGAGGAGTAGGAC
GTGGAGGAGGAGAAGAGGAGAGGAGAAGGAGCGGCGAGGAGGAGCACGAA
AAGTGGCTACAATGTTGCATGTGCTGCAGCCAAAGTGTAGCATACTTAAT
GGGGCAAAAGGGTGCGTCGTCCAAGCGGAAATTAACTTTTGTGGTTTAAA
GCGTTTTGGCAGACAATAGACGATGGCTATGGGCAACATCAGTAGCAGCA
GCCAAATCGGAAGAGGCCATTACGGCTTTAATCCCAGGAAAGGAGCAACA
ACAGCCACATCAGCAGCAGCAACAAATCTAATTACAGAACAACAATAAGG
CCAGGACCTGGTGCCACCGATGATGATGATGATGATGATGTTAGAAAACT
TCCGTTTTGTTTGCCCGGGCGGAAATGAGGCTCAATATGTCGCCCAGTCA
CAGGTTACCTTTCCAATTCTGTGAGCAGTGACCTCGAACGCATAGAGCTA
AAGGAATCCCAGCCCCCCTCGATTGCCTGAAATTTAATTAAAGCGCAAAA
AACTCGAAACGGACTCCTGCGATAAGGGTCGAAACAAAAGAGCAGTTTCC
CCCCAGGAGGAGGACGTGGAGGAGGCGGCGTCGGTGTGTCGGTGGGTTGG
CCCATAAATCTAACCGCCCACCAGCCACCCGGCAACCAGGCAATACGGCA
ATCCGGCAGCAACCCATGTTGCACGTTGCTGCAATCGAGCTGGCCCACGT
CCACTGGCCAATTAGCTGCTGCAACAGCCGAGAGCGGCTATCGTTTGGGC
TCCATTGAACGCGTACTCTAGCCGAGCGCAGCTGCCTCTCTGATGACTGC
CGCCAAAAGACGTGCGAGCAGCAGCAACAGCAGCGGCAGCAGCAACACTA
GCGGCAGCAGTAATGGCAACGAGCAGCACTCCCAGCAGCAACATCTGCAG
CTGCAGCAGCAGCAACAGCAGCATGCCCAGCCAAACGAGTACCAACAGTT
GCTGCAGCATCCCCACCATCACTATCAGCAACACTACAGCGGCAACAACA
ACACCAGCGGCAACAACAGCAATAGCAGCAACACGCAGCAATACCACCAG
AGACAGCAGCAACATCAGGCGACATTGCGCGACTGTTCCGTCAAATTGCC
GCTGGATATCCTATGGCTACCGAAATCGGCAATGCGGCCGGCGGGTCCTG
ATACCTCGCCCACGGACTGCATCCTGGTGGTGGGCGTTTCCCGTCCAAAA
TTGGCCGTCGTCTTCCTTACGGTCATGTTGATCTCTCTGTTCCTCACCTT
CCATGTCCTGTACGATAGTGCCGTATACAATATCCAAGCGGCCCAGGCTG
TCCACGAAAGGCATCGTCTATCTATGACCGCCTCCGCATCGGCTCTGGCA
TCCTCCTCCTCATCGTCGTCCAATTCCGGCTCCTCCTTCTCCTCCGCCGG
TGGCGCCTCCAATCATCTGCCCGTGTTCGTAAAGCCCGTGCCCAGCTCCA
ATCAGCTCAGCCATCCCATGGTTTTTCCCTCCAGCCGTGTGCACTTTCCA
AAAACCAGTCGACGGTTGCCGCAGGCACTCATCATCGGTGTGCGAAAATG
TGGTACACGGGCGCTGCTGGAGATGCTCTACCTACATCCGCGGATCCAGA
AGGCCGGCGGTGAGGTGCACTTCTTCGACCGGGACGAGAACTACCTGAAA
GGTCTGGAGTGGTACCGCAAGAAGATGCCACATTCGTTCCGTGGCCAGAT
AACCATCGAAAAGAGTCCCAGCTACTTTGTGTCGCCAGAGGTGCCGGAAC
GTGTGCGGGCCATGAATGCGAGCATCAAGCTGCTCCTGATTGTCCGGGAG
CCGGTGACCCGGGCCATTTCGGACTACACGCAGCTGCGTAGCCATGCGGC
CACCGCCATTCTGCCGTTGGCCGAGAAGGATCCACCGAGTCCGAGGGAGA
GTTCTGGCGGTGGGGCAGGTGGTGGTGGTGCTGGTGGTGGTGGGGGAAGC
GGGACCGCAGCTGCCAAGATGCCAACACAATCACTGCTGTATGCCAAACT
GCAGTCGGCCCGTGGCTATGACAATGCCCTGTTGGGTGGCAGTGGGGCGG
GCGCCAAGGAGACGAAAGGCAAAACGGTATCTTCGTCTTTGGTCAGGAGA
CAGGCGTTGGGCAGTGGCGGTGGTGTCGCTGGAGCTGCGATGACCACGAC
AACAATGTCGCCAATGGCGAGCGCCGCCCAAATGGCAGCCAAGTCCTTTG
AGGAGCTGGCCATATTTCCCAATGGCACCGTTAACGAGGCTTATCGACCG
CTCAGCATCTCCATGTACCATGTCCACCTCCATCGCTGGCTGGAGGTATT
TCCGCGGGAGCAGCTGCTGGTGGTCAATGGGGATCGCCTCATCGAAGATC
CGGTTTCTCAGCTGAAACGCATCGAGGCTTTCTTGGGCATTGAGCATCGG
GTGAATAGCGAGCACTTTTACTTCAATGAGACCAAGGGCTTCTACTGTCT
GCGCTATGACAACGGGGATCGCTGCCTCCGGGAGACGAAGGGCAGGAAGC
ATCCGCATGTGGATCCCGTGGTGGTCTCCAGATTGCGAAAGTTCTTCGCC
GAGTACAATCAGCGATTTTACGAGCTGGTCGGCGAGGATCTCGGCTGGCC
GGAGGAGTAAGCTCGTCGTGGCGAAATTCACTGGCAAATGGAGAGCTCTT
CGCTGTCCTGGCTGGCCATAAATCTGCTGTTGGTCAAACGTTTGGGTCAC
AGTGCAGCCAATTTAATTACAAGCAGGAGCGGCTGATGGAAAAAAACGAG
CAAAGTTATCCAGGACTTTCATTTGCCCTTTTCCGTTGCATACTTTTGCG
GGAGGCGGAGCGCAGTATTTCTGCCTGGCCGAGTCGAGCTACTCTGACAG
TTCAATTATGTGCGCGTATTGAAAAATTGCATTCCTATTTTCCCGGGCCA
CCACCCGTTCCGATCCCCATCACAATTCACCATCACCACATGCAAATTTG
CTTTTGCAGGAGCAAAGAGCAAGCGAAGGAACAAGGATCCGCATAAAAAA
AATATATATAGTAAAATAAACTGCACGCATTTTGCTGTGCAGCAGGCCAT
GAAAATGTGTGTGCATGAATGGGGCATACATGTCGTATATATATATATAT
ACATATATACATATAGTATATATATAGCGAAATGAAAAGCAATATCTACA
TGATGTTCGAAGGTTACACGTTTTCTACGTCTGCTTGTGTTTTACATACT
CATTCTCTCTCCTGCGTGTGAGTGAGTGAATCGGGAGTGTTCGAGAGGAT
AAAAATTAATTAAGCAACTAAATGTGATTTTATAGCATGTAAGCATAGGA
CAAATTGAAAATGATTGCGATGGCTGCTTGTGGGATATATGCAGTTGATG
GAGGGAGAGAGAGTGAGAGATATGGAAATTAGGAGTGAAGTGGCAATTAA
AAATGTATTTAGACTAACAGTCGGCTGAATTAAATGTGTGCGTACAGAAA
CATAAACAAAACTAAACATATCACATTTATCATAGCATAGTATAGTTTAA
TATAGTGTAGTTTATACACAACATAAATACATATCAGGGGTACTCGAGGT
CCTCAAGCAACTTGAATACTGAAAATGATTGAACTAATGCAAGTGGTGCG
TATGTTACATATCAAAAGCTAAACCAACCATGAAATCGAAACATATCAGC
TGCAAATGTCGGCAAATATACAAAGGAAGTAAATATACAACCATATATAT
ATACATATATATTATATACAAACGTATCAAATTTGTTGTAAATGACTTTG
ATTTTGACCTAGTTTGTAGTGCGCGATGTGTCACGGAATCGTCATAGACA
AACTTCTAGTTGAATATAGCCGTATTCTAGTTTAATATCGCACTGCCTAA
ACCAAAAAATAGTTATGTCTGTTTAGATAATTATACTGCACCAAACTTAG
TGATAGGTTTATCAAAGATAGTTTTTTAATGCATTTTTAAGCAAGATTAT
TTTATATTCCTAAAGAGAGAAAAGCATATCAATTACGGCAACTCTACATC
TAGTTACACATAATATATACATACATATATATATATACATACACTTACCA
GCTGTTTGGCTAACGTTTAAACATTTCATATGCATATCAAACTCAATGTG
AAAAACTCAACCTAGGCTAATGCTTTCCGTGACGATCCATCCAATTTCGG
TTTACACCAACTTGAGCACACTCTTTCATAGAGAGATATGTGTACGTATT
AATACCCCTTTGGTTCCGAGTACCAGTTCATAGGGATCTTCAGCACAGAA
CTCGACTAGCGCTTAATCAATACTAAACAGAAAATAGACTATGGAATGTA
TAAGCCTTGTTTTTACAGTGTATCTCCTTATATACATCCAATGCTGATAT
CCTAACGACAATGGAACCACGAAAGGAATGAAACAAACCAAGCAATATAA
ATTCAAAGCAAGACTGAAGGTCCTCCGCAGAATATTTTATTCTCCTACAT
TTTTTTTTTAGTCAGTCACTGAGTTGTTTTGAATTCTGTAAACCAACCAA
AAAGCAAATGTAGTAGCAAAGACAACGAACATTTCTAATTTGTTTATATT
TTTATACAGATGGGAAAAGTACATTAACCGAAATCCAGGAAAGATAACCG
AAATGGAAACAATTTCCGTTTTAAAATATATTATAGTAATGCGAAATTAT
TTATTAATATACTCAAAGAGCAATTTGTAGTCACATTTTGTCCTCTAACT
TCAACTAAGCCAATTGCATACGAAATACATATCAAAAGTTTAACTCAACT
CTAGATCCTCCATTGATATTGATATATTGATATAATTGATATTATTGATG
TATTGTCTACTTAAATTGAACGTGCAAAACTCAACAACTATAATGTACCT
TAAAAATCAACTCTCTATTTCTTTAACTTTAACTTAAACTCTAATGATAA
CTCAACTCTTACAACTTATTCAAACTTTCAATGTACATACATATACAAAA
TATTCAAAAAAAAAAAAAAAAAAA

GH20068.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A.c 5845 Hs3st-A.c 37..5609 1..5573 27820 99.9 Plus
Hs3st-A-RA 5601 Hs3st-A-RA 37..5596 1..5560 27800 100 Plus
Hs3st-A.a 4893 Hs3st-A.a 39..4888 711..5560 24250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14639059..14641633 2986..5555 12360 99.1 Plus
chr2R 21145070 chr2R 14632370..14633344 741..1712 4735 99.3 Plus
chr2R 21145070 chr2R 14637908..14638363 2339..2794 2250 99.6 Plus
chr2R 21145070 chr2R 14605280..14605707 1..428 2140 100 Plus
chr2R 21145070 chr2R 14635152..14635564 1713..2125 2050 99.8 Plus
chr2R 21145070 chr2R 14605863..14606147 429..713 1425 100 Plus
chr2R 21145070 chr2R 14635824..14636045 2122..2343 1050 98.2 Plus
chr2R 21145070 chr2R 14638746..14638940 2793..2987 975 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18751952..18754539 2986..5573 12895 99.9 Plus
2R 25286936 2R 18745265..18746236 741..1712 4860 100 Plus
2R 25286936 2R 18750801..18751256 2339..2794 2280 100 Plus
2R 25286936 2R 18718129..18718556 1..428 2140 100 Plus
2R 25286936 2R 18748051..18748463 1713..2125 2065 100 Plus
2R 25286936 2R 18718712..18718996 429..713 1425 100 Plus
2R 25286936 2R 18748723..18748944 2122..2343 1110 100 Plus
2R 25286936 2R 18751639..18751833 2793..2987 975 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18753151..18755738 2986..5573 12895 99.8 Plus
2R 25260384 2R 18746464..18747435 741..1712 4860 100 Plus
2R 25260384 2R 18752000..18752455 2339..2794 2280 100 Plus
2R 25260384 2R 18719328..18719755 1..428 2140 100 Plus
2R 25260384 2R 18749250..18749662 1713..2125 2065 100 Plus
2R 25260384 2R 18719911..18720195 429..713 1425 100 Plus
2R 25260384 2R 18749922..18750143 2122..2343 1110 100 Plus
2R 25260384 2R 18752838..18753032 2793..2987 975 100 Plus
Blast to na_te.dros performed 2019-03-16 18:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..7000 1417..1671 390 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6883 1467..1668 348 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2713 1404..1708 344 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6847 1540..1668 293 71.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6537..6802 1417..1668 260 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6823 1563..1668 252 74.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2469 783..917 193 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6889 784..919 189 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6857 784..908 179 62.2 Plus
roo 9092 roo DM_ROO 9092bp 1059..1129 1594..1668 177 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2378 1599..1668 175 73.6 Plus
roo 9092 roo DM_ROO 9092bp 1059..1150 785..875 169 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1501..1589 1586..1674 166 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6703..6831 772..894 153 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6919 783..875 152 63.9 Plus
roo 9092 roo DM_ROO 9092bp 1053..1148 824..917 150 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6805 839..910 146 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6864 784..871 145 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2384..2514 783..917 144 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6810 839..894 138 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6842 793..917 136 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2368 835..874 130 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2618..2675 845..903 130 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6777 841..894 128 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2856 783..873 126 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1601 844..903 125 69.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1106..1225 4513..4640 123 63.8 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 270..403 4200..4331 123 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1586 834..910 122 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6798 844..894 122 73.1 Plus
roo 9092 roo DM_ROO 9092bp 1092..1164 841..909 122 65.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3218..3347 789..916 122 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2819 841..875 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2480..2530 842..892 120 70.6 Plus

GH20068.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:04:34 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14635827..14636042 2125..2340 98 -> Plus
chr2R 14635152..14635563 1713..2124 88 -> Plus
chr2R 14605280..14605707 1..428 100 -> Plus
chr2R 14605863..14606007 429..573 100 == Plus
chr2R 14606079..14606145 645..711 100 -> Plus
chr2R 14619703..14619732 712..741 100 -> Plus
chr2R 14632371..14633059 742..1427 96 == Plus
chr2R 14633155..14633203 1523..1571 100 == Plus
chr2R 14633308..14633344 1676..1712 100 -> Plus
chr2R 14637910..14638361 2341..2792 93 -> Plus
chr2R 14638746..14638939 2793..2986 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:38:43 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..1818 1393..3210 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:11 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..1818 1393..3210 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:18 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..1818 1393..3210 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:26 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..1818 1393..3210 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:50 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..1818 1393..3210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:38:43 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..5555 1..5555 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:11 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..5555 1..5555 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:18 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 16..5570 1..5555 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:26 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..5555 1..5555 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:50 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 16..5570 1..5555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:34 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18718129..18718556 1..428 100 -> Plus
2R 18718712..18718994 429..711 100 -> Plus
2R 18732555..18732584 712..741 100 -> Plus
2R 18745266..18746236 742..1712 100 -> Plus
2R 18748051..18748462 1713..2124 100 -> Plus
2R 18748726..18748941 2125..2340 100 -> Plus
2R 18750803..18751254 2341..2792 100 -> Plus
2R 18751639..18751832 2793..2986 100 -> Plus
2R 18751953..18754521 2987..5555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:34 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18718129..18718556 1..428 100 -> Plus
2R 18718712..18718994 429..711 100 -> Plus
2R 18732555..18732584 712..741 100 -> Plus
2R 18745266..18746236 742..1712 100 -> Plus
2R 18748051..18748462 1713..2124 100 -> Plus
2R 18748726..18748941 2125..2340 100 -> Plus
2R 18750803..18751254 2341..2792 100 -> Plus
2R 18751639..18751832 2793..2986 100 -> Plus
2R 18751953..18754521 2987..5555 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:34 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18718129..18718556 1..428 100 -> Plus
2R 18718712..18718994 429..711 100 -> Plus
2R 18732555..18732584 712..741 100 -> Plus
2R 18745266..18746236 742..1712 100 -> Plus
2R 18748051..18748462 1713..2124 100 -> Plus
2R 18748726..18748941 2125..2340 100 -> Plus
2R 18750803..18751254 2341..2792 100 -> Plus
2R 18751639..18751832 2793..2986 100 -> Plus
2R 18751953..18754521 2987..5555 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:18 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14605634..14606061 1..428 100 -> Plus
arm_2R 14606217..14606499 429..711 100 -> Plus
arm_2R 14620060..14620089 712..741 100 -> Plus
arm_2R 14632771..14633741 742..1712 100 -> Plus
arm_2R 14635556..14635967 1713..2124 100 -> Plus
arm_2R 14636231..14636446 2125..2340 100 -> Plus
arm_2R 14638308..14638759 2341..2792 100 -> Plus
arm_2R 14639144..14639337 2793..2986 100 -> Plus
arm_2R 14639458..14642026 2987..5555 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:14:13 Download gff for GH20068.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18719328..18719755 1..428 100 -> Plus
2R 18719911..18720193 429..711 100 -> Plus
2R 18733754..18733783 712..741 100 -> Plus
2R 18746465..18747435 742..1712 100 -> Plus
2R 18749250..18749661 1713..2124 100 -> Plus
2R 18749925..18750140 2125..2340 100 -> Plus
2R 18752002..18752453 2341..2792 100 -> Plus
2R 18752838..18753031 2793..2986 100 -> Plus
2R 18753152..18755720 2987..5555 100   Plus

GH20068.hyp Sequence

Translation from 1392 to 3209

> GH20068.hyp
MTAAKRRASSSNSSGSSNTSGSSNGNEQHSQQQHLQLQQQQQQHAQPNEY
QQLLQHPHHHYQQHYSGNNNTSGNNSNSSNTQQYHQRQQQHQATLRDCSV
KLPLDILWLPKSAMRPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLF
LTFHVLYDSAVYNIQAAQAVHERHRLSMTASASALASSSSSSSNSGSSFS
SAGGASNHLPVFVKPVPSSNQLSHPMVFPSSRVHFPKTSRRLPQALIIGV
RKCGTRALLEMLYLHPRIQKAGGEVHFFDRDENYLKGLEWYRKKMPHSFR
GQITIEKSPSYFVSPEVPERVRAMNASIKLLLIVREPVTRAISDYTQLRS
HAATAILPLAEKDPPSPRESSGGGAGGGGAGGGGGSGTAAAKMPTQSLLY
AKLQSARGYDNALLGGSGAGAKETKGKTVSSSLVRRQALGSGGGVAGAAM
TTTTMSPMASAAQMAAKSFEELAIFPNGTVNEAYRPLSISMYHVHLHRWL
EVFPREQLLVVNGDRLIEDPVSQLKRIEAFLGIEHRVNSEHFYFNETKGF
YCLRYDNGDRCLRETKGRKHPHVDPVVVSRLRKFFAEYNQRFYELVGEDL
GWPEE*

GH20068.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-PB 605 CG33147-PB 1..605 1..605 3138 100 Plus
Hs3st-A-PA 605 CG33147-PA 1..605 1..605 3138 100 Plus
Hs3st-B-PB 384 CG7890-PB 30..240 145..353 400 44 Plus
Hs3st-B-PA 384 CG7890-PA 30..240 145..353 400 44 Plus
Hs3st-B-PB 384 CG7890-PB 226..384 452..603 336 43.8 Plus
Hs3st-B-PA 384 CG7890-PA 226..384 452..603 336 43.8 Plus
sfl-PB 1048 CG8339-PB 915..1028 485..596 166 28.9 Plus

GH20068.pep Sequence

Translation from 1392 to 3209

> GH20068.pep
MTAAKRRASSSNSSGSSNTSGSSNGNEQHSQQQHLQLQQQQQQHAQPNEY
QQLLQHPHHHYQQHYSGNNNTSGNNSNSSNTQQYHQRQQQHQATLRDCSV
KLPLDILWLPKSAMRPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLF
LTFHVLYDSAVYNIQAAQAVHERHRLSMTASASALASSSSSSSNSGSSFS
SAGGASNHLPVFVKPVPSSNQLSHPMVFPSSRVHFPKTSRRLPQALIIGV
RKCGTRALLEMLYLHPRIQKAGGEVHFFDRDENYLKGLEWYRKKMPHSFR
GQITIEKSPSYFVSPEVPERVRAMNASIKLLLIVREPVTRAISDYTQLRS
HAATAILPLAEKDPPSPRESSGGGAGGGGAGGGGGSGTAAAKMPTQSLLY
AKLQSARGYDNALLGGSGAGAKETKGKTVSSSLVRRQALGSGGGVAGAAM
TTTTMSPMASAAQMAAKSFEELAIFPNGTVNEAYRPLSISMYHVHLHRWL
EVFPREQLLVVNGDRLIEDPVSQLKRIEAFLGIEHRVNSEHFYFNETKGF
YCLRYDNGDRCLRETKGRKHPHVDPVVVSRLRKFFAEYNQRFYELVGEDL
GWPEE*

GH20068.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11113-PA 621 GF11113-PA 107..621 93..605 2238 87.2 Plus
Dana\GF15993-PA 374 GF15993-PA 116..230 237..353 385 62.4 Plus
Dana\GF15993-PA 374 GF15993-PA 225..374 459..603 354 44.1 Plus
Dana\GF23539-PA 1052 GF23539-PA 919..1032 485..596 162 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21921-PA 613 GG21921-PA 95..613 93..605 2375 93.5 Plus
Dere\GG19219-PA 371 GG19219-PA 113..221 237..347 387 64.9 Plus
Dere\GG19219-PA 371 GG19219-PA 222..371 459..603 352 44.1 Plus
Dere\GG15349-PA 859 GG15349-PA 726..839 485..596 161 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23421-PA 477 GH23421-PA 3..477 108..605 1993 81.9 Plus
Dgri\GH24726-PA 384 GH24726-PA 80..240 176..353 397 48.3 Plus
Dgri\GH24726-PA 384 GH24726-PA 235..384 459..603 335 42.8 Plus
Dgri\GH15162-PA 1086 GH15162-PA 953..1066 485..596 169 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-PB 605 CG33147-PB 1..605 1..605 3138 100 Plus
Hs3st-A-PA 605 CG33147-PA 1..605 1..605 3138 100 Plus
Hs3st-B-PB 384 CG7890-PB 30..240 145..353 400 44 Plus
Hs3st-B-PA 384 CG7890-PA 30..240 145..353 400 44 Plus
Hs3st-B-PB 384 CG7890-PB 226..384 452..603 336 43.8 Plus
Hs3st-B-PA 384 CG7890-PA 226..384 452..603 336 43.8 Plus
sfl-PB 1048 CG8339-PB 915..1028 485..596 166 28.9 Plus
sfl-PA 1048 CG8339-PA 915..1028 485..596 166 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19219-PA 588 GI19219-PA 118..588 94..605 2087 81.9 Plus
Dmoj\GI14881-PA 390 GI14881-PA 132..246 237..353 390 62.4 Plus
Dmoj\GI14881-PA 390 GI14881-PA 241..390 459..603 336 42.8 Plus
Dmoj\GI12102-PA 1025 GI12102-PA 892..1005 485..596 165 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10768-PA 596 GL10768-PA 97..596 91..605 2162 84.9 Plus
Dper\GL13007-PA 381 GL13007-PA 123..237 237..353 387 62.4 Plus
Dper\GL13007-PA 381 GL13007-PA 232..380 459..602 348 43.7 Plus
Dper\GL22583-PA 995 GL22583-PA 862..975 485..596 158 28.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17321-PA 596 GA17321-PA 97..596 91..605 2154 84.6 Plus
Dpse\GA20664-PA 381 GA20664-PA 123..237 237..353 387 62.4 Plus
Dpse\GA20664-PA 381 GA20664-PA 232..380 459..602 346 43.7 Plus
Dpse\GA21002-PA 815 GA21002-PA 682..795 485..596 158 28.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21913-PA 607 GM21913-PA 1..607 1..605 3163 97.7 Plus
Dsec\GM22954-PA 385 GM22954-PA 129..241 239..353 385 63.5 Plus
Dsec\GM22954-PA 385 GM22954-PA 236..385 459..603 351 44.1 Plus
Dsec\GM14789-PA 874 GM14789-PA 741..854 485..596 162 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11407-PA 609 GD11407-PA 1..609 1..605 2354 90.2 Plus
Dsim\GD24871-PA 203 GD24871-PA 54..203 459..603 346 44.1 Plus
Dsim\GD24871-PA 203 GD24871-PA 1..59 295..353 205 64.4 Plus
Dsim\GD13961-PA 875 GD13961-PA 742..855 485..596 161 28.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20291-PA 583 GJ20291-PA 54..583 46..605 2099 76.6 Plus
Dvir\GJ15310-PA 373 GJ15310-PA 77..229 179..353 395 48.6 Plus
Dvir\GJ15310-PA 373 GJ15310-PA 224..373 459..603 335 42.1 Plus
Dvir\GJ13376-PA 1013 GJ13376-PA 880..993 485..596 160 28.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20921-PA 573 GK20921-PA 1..573 1..605 2152 79.5 Plus
Dwil\GK16348-PA 375 GK16348-PA 120..231 240..353 387 64 Plus
Dwil\GK16348-PA 375 GK16348-PA 226..375 459..603 351 44.1 Plus
Dwil\GK12546-PA 1080 GK12546-PA 947..1060 485..596 160 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11996-PA 606 GE11996-PA 1..606 1..605 2444 91.4 Plus
Dyak\GE15838-PA 372 GE15838-PA 114..228 237..353 385 62.4 Plus
Dyak\GE15838-PA 372 GE15838-PA 223..372 459..603 349 44.1 Plus
Dyak\GE21567-PA 871 GE21567-PA 738..851 485..596 157 28.1 Plus