Clone GH20077 Report

Search the DGRC for GH20077

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:200
Well:77
Vector:pOT2
Associated Gene/TranscriptCG10209-RA
Protein status:GH20077.pep: gold
Preliminary Size:2085
Sequenced Size:2038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10209 2001-01-01 Release 2 assignment
CG10209 2001-09-19 Blastp of sequenced clone
CG10209 2003-01-01 Sim4 clustering to Release 3
CG10209 2008-04-29 Release 5.5 accounting
CG10209 2008-08-15 Release 5.9 accounting
CG10209 2008-12-18 5.12 accounting

Clone Sequence Records

GH20077.complete Sequence

2038 bp (2038 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058423

> GH20077.complete
CGGACAGAAGAAGAAGAACGAAAGGCAGCAACAGCAATGTTTGAGGGAGT
GAAAAATTAAACAAAAGTCCCCGGAATTCAGCAGCAAAAACTCGACGGCG
GTTGAAAAACAAAACATCAAGATTTCGAGCCAACGCAGACTGCTTCAAAA
GCTCACCATGGATCGAGTGACCAAGCCGCAGAAGAAGATGCTCATCACAC
TGCTGCGGGAAACCAAGTACATGGAGGGCAAAAAGGAGAAGGAGTGGTAT
TGGGAGAAGATCCAAGCGGCCCTTAATACTATTGGTCCCAAGAAGACGAT
TATTCAGTGGAAAAAGTGCTGGCGCGATATGCGACTGACCACAAGGAAAA
AGCTGGCGGAACTGAAGCGCTGTCAACTCTCTGGAGGATCTCCACCACCG
GGGATCGAACTAAACCAGGAGGACAACGATATCATCGACATTGTGGGCAC
CGAGTACTTCTACGAGGAGATGAATGGTGAGCTCAAGGCGGAGAACTTCT
TGACCGGCTTGGACTACGCCCCGGAGCATCTGTGCGATGCTATTCTCACG
GCAGCAGTGGGCCATCACCAGCACAATATGCAGCACCAGAAGGATCCGCA
ATCGCATGCAGGGCAACAGCAGCAGCAGGATCATCACACCAACGATGGCG
AAACCAATGATGCTCCTGGATCAAGCAATGGTGGCTCATATCAGGGACAC
CCAGTATCCCAGTTGCAGGCGCACAATGGCAGCGGTGGAGGAGGCGAGCA
TAGCGGCGGTGGTCAATCCCACTCCGGAATGCTCCAGCACCCTGCTTTTC
ACGGTGGCTTGCATCCACACCTGTTGAGGCGCCAGCATGGAAGTGGATCA
CTATCCAGAGAGTCGCCATTTGAGGAGAAGCTTCTGCAGTTCATGCAGGA
TGCATTTCCAAAAAAGAGCAAGAAGCGCAAGAACCGGGATCCCGACAAGC
TGTTCCTCTTATCCCTGTACGAAGAGATCAAGAGAGTTCCGGAGGAGATA
CGCCTTGATGTAAAGTCCGAACTAATGCAGATACTGAAGAAGTATCAGAA
GAAGTCGCCTGTCAAAGCGGAGAAGCCCGCGCCCTCCTCTACGTCAACCT
CCTCAAAACTCAGCTCTAGCAGCAGTGGCAGTAGCACGGTGACTACTCAC
TTGTCCCACAGCATGTACCAGTTGCAAAAGAAATACGAAAAGGGCGAGCG
TGAACCATCGCCTCAATCACAGGTAGAGCGAGTAGCATCTGCAGGCGCAG
TTGCTGTGCCCATTCATACCTCCCAGCAGCTGCCTCTTTTCCAACTTCAG
AAGAAGTACGAGGAGAACAGCGTGGAGAAGGTTCATCAGCAGCAACAGCA
ACAGCAAAGCGAGCAACGCAAGCATGTGGAGGCCGCTCAGGCCCTTCATG
CTGCCCACCAGCAACCGCCTCCACCGCCACCCAATGAGCACCTGCACCAC
CCCCAGATGGCCCACAACATCATGTTTCCGCTGGGACAGCTTCGCAACGA
GCAGCCGACCGCACAGCAACACCAGCATGGCCACAATCCCCACCAGCAAC
AGCAACAGCATCCCCACCAGCAGCAGCAACAGGGACAGCAACACCATCCG
CCAACGATCTTCGGATCGACCGCCAGCGAACGGCCTCCAATGTCCTACGA
AAATGTCGGATGAGTCCTGAGCCGTCTGTGGGAAGCCACTTGTGGAGCAC
CACGCCCTGCGACGGTGTCCCCCACGACGGCAGACGCGCACAGCTGTTAG
CCCTCGATTTAGACGGCAATTCGTAGGTCTCATTCTTATGCTAGCCTATA
CCTAAGTACACATTGCTCACTACACTACTACAGTCAAAAATGGTGCAGTC
AATGAGGAAGATACTCCTGATGTATGCCATTTTGTAGTAAGTGGATGCCG
TGATCCTCATGTAAATGTTCCCGTGGCAATAACAGCGTAGCTCAACTGTG
ACTCAAGTTCTCAATAGATCGCGACGCATACATTTTTTCGGTGTAAATAC
AAATATAATTGAATCTTAAAAAAAAAAAAAAAAAAAAA

GH20077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-RA 2145 CG10209-RA 71..2092 1..2022 10110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10733381..10735083 2017..315 8455 99.8 Minus
chr2R 21145070 chr2R 10735522..10735682 161..1 790 99.4 Minus
chr2R 21145070 chr2R 10735133..10735289 316..160 785 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14846059..14847766 2022..315 8540 100 Minus
2R 25286936 2R 14848199..14848359 161..1 805 100 Minus
2R 25286936 2R 14847816..14847972 316..160 785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14847258..14848965 2022..315 8540 100 Minus
2R 25260384 2R 14849398..14849558 161..1 805 100 Minus
2R 25260384 2R 14849015..14849171 316..160 785 100 Minus
Blast to na_te.dros performed 2019-03-16 08:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2549 1326..1545 227 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..7057 1274..1582 203 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2281..2652 1234..1601 202 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6683..7018 1260..1603 194 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6985 1334..1596 189 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2628..2871 1334..1595 184 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 1335..1582 179 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6705..7042 1257..1597 175 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2590..2838 1335..1595 172 58.6 Plus
roo 9092 roo DM_ROO 9092bp 1056..1176 544..656 161 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2682 1500..1598 155 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6775..6872 548..643 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2746..2846 1290..1390 145 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2396 563..645 137 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6828 563..636 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2450 548..657 133 60.4 Plus
roo 9092 roo DM_ROO 9092bp 1057..1147 1270..1357 133 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2445..2526 563..643 128 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2780..2950 556..723 128 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2387 580..657 124 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6803 562..643 124 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2535 1155..1373 121 54.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2720..2835 533..643 116 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2832 562..626 116 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6901 552..645 116 61.1 Plus

GH20077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:47:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10733381..10733801 1597..2017 100 == Minus
chr2R 10733858..10735081 317..1540 99 <- Minus
chr2R 10735133..10735288 161..316 100 <- Minus
chr2R 10735523..10735682 1..160 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:01 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..1506 158..1663 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:10 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..1506 158..1663 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:53:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RB 1..1593 158..1750 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:54 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..1506 158..1663 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:25 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RB 1..1593 158..1750 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:50 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..2017 1..2017 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:10 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..2017 1..2017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 8..2024 1..2017 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:54 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 1..2017 1..2017 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:25 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10209-RA 8..2024 1..2017 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14846064..14847764 317..2017 100 <- Minus
2R 14847816..14847971 161..316 100 <- Minus
2R 14848200..14848359 1..160 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14846064..14847764 317..2017 100 <- Minus
2R 14847816..14847971 161..316 100 <- Minus
2R 14848200..14848359 1..160 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14846064..14847764 317..2017 100 <- Minus
2R 14847816..14847971 161..316 100 <- Minus
2R 14848200..14848359 1..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:38 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10735705..10735864 1..160 100   Minus
arm_2R 10733569..10735269 317..2017 100 <- Minus
arm_2R 10735321..10735476 161..316 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:03 Download gff for GH20077.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14847263..14848963 317..2017 100 <- Minus
2R 14849015..14849170 161..316 100 <- Minus
2R 14849399..14849558 1..160 100   Minus

GH20077.pep Sequence

Translation from 157 to 1662

> GH20077.pep
MDRVTKPQKKMLITLLRETKYMEGKKEKEWYWEKIQAALNTIGPKKTIIQ
WKKCWRDMRLTTRKKLAELKRCQLSGGSPPPGIELNQEDNDIIDIVGTEY
FYEEMNGELKAENFLTGLDYAPEHLCDAILTAAVGHHQHNMQHQKDPQSH
AGQQQQQDHHTNDGETNDAPGSSNGGSYQGHPVSQLQAHNGSGGGGEHSG
GGQSHSGMLQHPAFHGGLHPHLLRRQHGSGSLSRESPFEEKLLQFMQDAF
PKKSKKRKNRDPDKLFLLSLYEEIKRVPEEIRLDVKSELMQILKKYQKKS
PVKAEKPAPSSTSTSSKLSSSSSGSSTVTTHLSHSMYQLQKKYEKGEREP
SPQSQVERVASAGAVAVPIHTSQQLPLFQLQKKYEENSVEKVHQQQQQQQ
SEQRKHVEAAQALHAAHQQPPPPPPNEHLHHPQMAHNIMFPLGQLRNEQP
TAQQHQHGHNPHQQQQQHPHQQQQQGQQHHPPTIFGSTASERPPMSYENV
G*

GH20077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19781-PA 482 GF19781-PA 1..482 11..501 1959 85.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22393-PA 502 GG22393-PA 6..502 2..501 2527 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20476-PA 478 GH20476-PA 1..478 11..501 1583 73.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-PB 530 CG10209-PB 1..501 1..501 2685 100 Plus
CG10209-PA 501 CG10209-PA 1..501 1..501 2685 100 Plus
CG43347-PD 2652 CG43347-PD 1469..1608 346..482 165 37 Plus
CG43347-PB 2666 CG43347-PB 1483..1622 346..482 165 37 Plus
CG43347-PC 2684 CG43347-PC 1501..1640 346..482 165 37 Plus
sr-PE 906 CG7847-PE 237..419 300..480 164 30.2 Plus
sr-PB 906 CG7847-PB 237..419 300..480 164 30.2 Plus
sr-PA 1186 CG7847-PA 517..699 300..480 164 30.2 Plus
sr-PD 1271 CG7847-PD 517..699 300..480 164 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21018-PA 529 GI21018-PA 33..529 1..501 1652 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10653-PA 510 GL10653-PA 1..510 1..501 1844 83.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10157-PA 513 GA10157-PA 1..513 1..501 1830 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20176-PA 501 GM20176-PA 1..501 1..501 2618 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25653-PA 501 GD25653-PA 1..501 1..501 2633 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21941-PA 479 GJ21941-PA 1..479 11..501 1606 75.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23291-PA 497 GK23291-PA 1..497 2..501 1561 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12282-PA 500 GE12282-PA 1..500 1..501 2556 97 Plus

GH20077.hyp Sequence

Translation from 157 to 1662

> GH20077.hyp
MDRVTKPQKKMLITLLRETKYMEGKKEKEWYWEKIQAALNTIGPKKTIIQ
WKKCWRDMRLTTRKKLAELKRCQLSGGSPPPGIELNQEDNDIIDIVGTEY
FYEEMNGELKAENFLTGLDYAPEHLCDAILTAAVGHHQHNMQHQKDPQSH
AGQQQQQDHHTNDGETNDAPGSSNGGSYQGHPVSQLQAHNGSGGGGEHSG
GGQSHSGMLQHPAFHGGLHPHLLRRQHGSGSLSRESPFEEKLLQFMQDAF
PKKSKKRKNRDPDKLFLLSLYEEIKRVPEEIRLDVKSELMQILKKYQKKS
PVKAEKPAPSSTSTSSKLSSSSSGSSTVTTHLSHSMYQLQKKYEKGEREP
SPQSQVERVASAGAVAVPIHTSQQLPLFQLQKKYEENSVEKVHQQQQQQQ
SEQRKHVEAAQALHAAHQQPPPPPPNEHLHHPQMAHNIMFPLGQLRNEQP
TAQQHQHGHNPHQQQQQHPHQQQQQGQQHHPPTIFGSTASERPPMSYENV
G*

GH20077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10209-PB 530 CG10209-PB 1..501 1..501 2685 100 Plus
CG10209-PA 501 CG10209-PA 1..501 1..501 2685 100 Plus
CG43347-PD 2652 CG43347-PD 1469..1608 346..482 165 37 Plus
CG43347-PB 2666 CG43347-PB 1483..1622 346..482 165 37 Plus
CG43347-PC 2684 CG43347-PC 1501..1640 346..482 165 37 Plus