Clone GH20109 Report

Search the DGRC for GH20109

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:201
Well:9
Vector:pOT2
Associated Gene/TranscriptCG8560-RA
Protein status:GH20109.pep: gold
Preliminary Size:1439
Sequenced Size:1327

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8560 2001-01-01 Release 2 assignment
CG8560 2001-07-04 Blastp of sequenced clone
CG8560 2003-01-01 Sim4 clustering to Release 3
CG8560 2008-04-29 Release 5.5 accounting
CG8560 2008-08-15 Release 5.9 accounting
CG8560 2008-12-18 5.12 accounting

Clone Sequence Records

GH20109.complete Sequence

1327 bp (1327 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051552

> GH20109.complete
CGGACTGAAAAATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGGCCAGC
GTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGACATCAA
TGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGGAAATG
AGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCAGTCGC
GTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTGGAGAA
GTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTCGCTGC
GTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGCGATCC
GCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAGATCAA
TGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATCCGTCC
AGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCACTATC
ACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGATGCTGG
TATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGTGATCC
ATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGGACTTT
GACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATACTCTCA
CACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAGTGCCT
GCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAGAGGTT
GGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACGGCCTT
CTCCGAGCCGGAGACTCAGTTGATTCGCGATATCCTGCTCAGTCTGACCG
GACGTGGCAAGTTCTACCTGACCCTCCACTCCTATGGCAACTACCTGCTG
TATCCTTGGGGCTGGACGTCTGCTCTGCCCAGCAGCTGGCGCGACAACGA
TGAGGTGGCCCAGGGTGGAGCGGATGCCATCAAGAGTGCGACCGGAACGA
AGTATACCGTGGGCAGTTCCACCAACGTTCTGTACGCTGCTGCCGGCGGC
AGTGACGACTATGCCTTCGGAGTGGCCAACTTCCCGGTGTCGATTACCAT
GGAACTGCCGGCCGGCGGTACTGGCTTCAATCCCAGCACCAGCCAGATCG
AGGGCTTCGTTTCCGAGACCTGGGTGGGCATCAAGGCCATGGCCCAGAAG
GTTGCCGATAAGTACTAGGCGCGTACAATAAATGTCATTGATATTTTCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

GH20109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RA 1690 CG8560-RA 268..1568 1..1301 6505 100 Plus
CG8560.a 1896 CG8560.a 268..1568 1..1301 6505 100 Plus
CG8562-RA 1550 CG8562-RA 1009..1074 915..980 225 89.3 Plus
CG8562-RA 1550 CG8562-RA 568..650 489..571 205 83.1 Plus
CG8562-RA 1550 CG8562-RA 715..770 636..691 175 87.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7394838..7395729 970..79 4460 100 Minus
chr3L 24539361 chr3L 7394442..7394770 1299..971 1630 99.7 Minus
chr3L 24539361 chr3L 7395945..7396023 79..1 395 100 Minus
chr3L 24539361 chr3L 7390979..7391181 489..691 310 76.8 Plus
chr3L 24539361 chr3L 7391420..7391475 915..970 205 91.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402728..7403619 970..79 4460 100 Minus
3L 28110227 3L 7402330..7402660 1301..971 1655 100 Minus
3L 28110227 3L 7403836..7403914 79..1 395 100 Minus
3L 28110227 3L 7398870..7399072 489..691 310 76.8 Plus
3L 28110227 3L 7399311..7399366 915..970 205 91.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7395828..7396719 970..79 4460 100 Minus
3L 28103327 3L 7395430..7395760 1301..971 1655 100 Minus
3L 28103327 3L 7396936..7397014 79..1 395 100 Minus
3L 28103327 3L 7392411..7392466 915..970 205 91 Plus
3L 28103327 3L 7391970..7392052 489..571 205 83.1 Plus
3L 28103327 3L 7392117..7392172 636..691 175 87.5 Plus
3L 28103327 3L 7393881..7393945 631..695 160 83 Plus
3L 28103327 3L 7387325..7387364 664..703 140 90 Plus
Blast to na_te.dros performed on 2019-03-15 21:43:56 has no hits.

GH20109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:44:58 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7394442..7394770 971..1299 99 <- Minus
chr3L 7394838..7395728 80..970 100 <- Minus
chr3L 7395945..7396023 1..79 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:04 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 12..1268 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:07 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 12..1268 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:56:35 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 12..1268 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:58:04 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 12..1268 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:28 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 12..1268 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:28 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 268..1566 1..1299 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:07 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 268..1566 1..1299 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:56:35 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 268..1566 1..1299 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:58:04 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 268..1566 1..1299 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:28 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 268..1566 1..1299 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:58 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7402332..7402660 971..1299 100 <- Minus
3L 7402728..7403618 80..970 100 <- Minus
3L 7403836..7403914 1..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:58 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7402332..7402660 971..1299 100 <- Minus
3L 7402728..7403618 80..970 100 <- Minus
3L 7403836..7403914 1..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:58 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7402332..7402660 971..1299 100 <- Minus
3L 7402728..7403618 80..970 100 <- Minus
3L 7403836..7403914 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:56:35 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395432..7395760 971..1299 100 <- Minus
arm_3L 7395828..7396718 80..970 100 <- Minus
arm_3L 7396936..7397014 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:53 Download gff for GH20109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7395828..7396718 80..970 100 <- Minus
3L 7396936..7397014 1..79 100   Minus
3L 7395432..7395760 971..1299 100 <- Minus

GH20109.pep Sequence

Translation from 11 to 1267

> GH20109.pep
MLKLFAVVLLLASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYD
FFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQER
DENQNQRLMNLRSAERSVSFKAFHRHAEINAYLDELAAAYPSRVSVQVAG
KSYENRDIKTITITNGDGKTGKNVVFLDAGIHAREWIAHAGALYVIHQLV
ENFAANSELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTRKPISSACYGT
DANRNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGK
FYLTLHSYGNYLLYPWGWTSALPSSWRDNDEVAQGGADAIKSATGTKYTV
GSSTNVLYAAAGGSDDYAFGVANFPVSITMELPAGGTGFNPSTSQIEGFV
SETWVGIKAMAQKVADKY*

GH20109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23789-PA 417 GF23789-PA 1..417 1..418 1820 81.3 Plus
Dana\GF10642-PA 425 GF10642-PA 5..425 2..418 1178 54.4 Plus
Dana\GF10643-PA 428 GF10643-PA 7..425 4..418 1003 48.7 Plus
Dana\GF10641-PA 357 GF10641-PA 1..355 65..418 882 48.6 Plus
Dana\GF22810-PA 427 GF22810-PA 27..419 21..414 680 39 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14964-PA 418 GG14964-PA 1..418 1..418 2042 92.8 Plus
Dere\GG14424-PA 424 GG14424-PA 19..424 17..418 1135 54.7 Plus
Dere\GG14425-PA 427 GG14425-PA 5..424 2..418 1069 49.8 Plus
Dere\GG14423-PA 425 GG14423-PA 20..423 16..418 971 46.2 Plus
Dere\GG16151-PA 365 GG16151-PA 31..352 123..418 679 45.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16615-PA 418 GH16615-PA 2..418 1..418 1724 74.2 Plus
Dgri\GH14882-PA 423 GH14882-PA 14..423 13..418 1148 53.6 Plus
Dgri\GH14883-PA 424 GH14883-PA 7..421 2..418 1073 50 Plus
Dgri\GH14881-PA 431 GH14881-PA 23..427 17..418 903 45 Plus
Dgri\GH16610-PA 383 GH16610-PA 52..343 132..418 642 44.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PB 418 CG8560-PB 1..418 1..418 2183 100 Plus
CG8560-PA 418 CG8560-PA 1..418 1..418 2183 100 Plus
CG8562-PA 424 CG8562-PA 9..424 7..418 1154 55 Plus
CG18417-PA 427 CG18417-PA 6..424 7..418 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 1..342 78..418 857 48.3 Plus
CG17633-PA 430 CG17633-PA 8..423 4..414 678 37.1 Plus
CG4017-PA 424 CG4017-PA 3..416 7..415 646 36.9 Plus
CG3108-PA 1132 CG3108-PA 720..1083 18..388 626 36.3 Plus
CG8539-PB 385 CG8539-PB 44..340 129..418 596 42.2 Plus
CG8539-PA 385 CG8539-PA 44..340 129..418 596 42.2 Plus
CG18585-PB 422 CG18585-PB 3..418 1..416 583 34.3 Plus
CG18585-PA 422 CG18585-PA 3..418 1..416 583 34.3 Plus
CG14820-PA 416 CG14820-PA 2..413 1..414 566 35.7 Plus
CG8564-PA 504 CG8564-PA 41..364 126..416 548 37.7 Plus
CG8564-PC 520 CG8564-PC 57..380 126..416 548 37.7 Plus
CG8563-PB 440 CG8563-PB 9..429 2..406 545 32.6 Plus
CG8563-PA 440 CG8563-PA 9..429 2..406 545 32.6 Plus
CG2915-PA 453 CG2915-PA 55..449 21..417 542 31.7 Plus
CG2915-PB 453 CG2915-PB 55..449 21..417 542 31.7 Plus
CG7025-PA 429 CG7025-PA 29..419 21..416 527 33.3 Plus
CG12374-PA 422 CG12374-PA 7..418 1..417 508 28.6 Plus
CG3097-PA 445 CG3097-PA 137..439 112..414 502 34.8 Plus
CG4408-PB 467 CG4408-PB 69..463 21..417 480 31.4 Plus
CG4408-PA 479 CG4408-PA 81..475 21..417 480 31.4 Plus
CG8945-PC 1430 CG8945-PC 980..1426 20..410 408 27.7 Plus
CG42264-PA 634 CG42264-PA 217..585 18..367 382 25.2 Plus
CG42264-PB 521 CG42264-PB 146..472 64..367 379 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12460-PA 419 GI12460-PA 2..419 1..418 1733 75.8 Plus
Dmoj\GI12856-PA 423 GI12856-PA 21..423 20..418 1217 57 Plus
Dmoj\GI12859-PA 423 GI12859-PA 3..420 1..418 1061 49.4 Plus
Dmoj\GI12855-PA 396 GI12855-PA 20..393 43..418 1042 52.2 Plus
Dmoj\GI12857-PA 402 GI12857-PA 35..393 60..418 1029 53 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24275-PA 418 GL24275-PA 1..418 1..418 1782 79.4 Plus
Dper\GL26418-PA 424 GL26418-PA 6..421 7..418 1126 52.5 Plus
Dper\GL26385-PA 426 GL26385-PA 20..424 17..418 968 46.4 Plus
Dper\GL24220-PA 371 GL24220-PA 13..327 108..418 656 42.6 Plus
Dper\GL26407-PA 202 GL26407-PA 4..202 225..418 636 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21163-PA 418 GA21163-PA 1..418 1..418 1824 80.9 Plus
Dpse\GA14928-PA 424 GA14928-PA 6..421 7..418 1132 52.7 Plus
Dpse\GA21165-PA 425 GA21165-PA 22..425 19..418 1130 53.7 Plus
Dpse\GA16855-PA 426 GA16855-PA 20..424 17..418 966 46.1 Plus
Dpse\GA21147-PA 379 GA21147-PA 21..335 108..418 658 42.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13761-PA 418 GM13761-PA 1..418 1..418 2190 97.4 Plus
Dsec\GM14841-PA 424 GM14841-PA 3..424 2..418 1177 54.7 Plus
Dsec\GM14842-PA 336 GM14842-PA 63..333 150..418 871 60.7 Plus
Dsec\GM14840-PA 390 GM14840-PA 18..388 14..418 837 41.3 Plus
Dsec\GM17695-PA 429 GM17695-PA 8..422 4..414 663 37.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13057-PA 418 GD13057-PA 1..418 1..418 2181 97.1 Plus
Dsim\GD14014-PA 424 GD14014-PA 9..424 7..418 1157 54.3 Plus
Dsim\GD14015-PA 427 GD14015-PA 6..424 7..418 1013 48.1 Plus
Dsim\GD14013-PA 425 GD14013-PA 18..423 14..418 956 45.5 Plus
Dsim\GD23629-PA 430 GD23629-PA 8..423 4..414 677 38.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12361-PA 419 GJ12361-PA 15..419 14..418 1688 74.8 Plus
Dvir\GJ12999-PA 423 GJ12999-PA 20..423 19..418 1203 56.7 Plus
Dvir\GJ12363-PA 419 GJ12363-PA 20..395 19..390 1080 55.3 Plus
Dvir\GJ13000-PA 424 GJ13000-PA 27..421 24..418 1054 51.7 Plus
Dvir\GJ12998-PA 428 GJ12998-PA 19..424 16..418 909 45.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16806-PA 418 GK16806-PA 12..418 12..418 1794 79.4 Plus
Dwil\GK17381-PA 422 GK17381-PA 2..422 4..418 1205 56.4 Plus
Dwil\GK17382-PA 426 GK17382-PA 26..423 21..418 1034 50.2 Plus
Dwil\GK17380-PA 436 GK17380-PA 24..429 12..418 938 45.8 Plus
Dwil\GK16802-PA 361 GK16802-PA 40..336 123..418 682 45.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20414-PA 418 GE20414-PA 1..418 1..418 2143 95 Plus
Dyak\GE21615-PA 424 GE21615-PA 9..424 7..418 1170 54.8 Plus
Dyak\GE21616-PA 427 GE21616-PA 7..424 4..418 1073 51.3 Plus
Dyak\GE21614-PA 418 GE21614-PA 18..416 14..418 928 45.2 Plus
Dyak\GE19721-PA 352 GE19721-PA 31..352 123..418 670 43.5 Plus

GH20109.hyp Sequence

Translation from 11 to 1267

> GH20109.hyp
MLKLFAVVLLLASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYD
FFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQER
DENQNQRLMNLRSAERSVSFKAFHRHAEINAYLDELAAAYPSRVSVQVAG
KSYENRDIKTITITNGDGKTGKNVVFLDAGIHAREWIAHAGALYVIHQLV
ENFAANSELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTRKPISSACYGT
DANRNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGK
FYLTLHSYGNYLLYPWGWTSALPSSWRDNDEVAQGGADAIKSATGTKYTV
GSSTNVLYAAAGGSDDYAFGVANFPVSITMELPAGGTGFNPSTSQIEGFV
SETWVGIKAMAQKVADKY*

GH20109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PB 418 CG8560-PB 1..418 1..418 2183 100 Plus
CG8560-PA 418 CG8560-PA 1..418 1..418 2183 100 Plus
CG8562-PA 424 CG8562-PA 9..424 7..418 1154 55 Plus
CG18417-PA 427 CG18417-PA 6..424 7..418 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 1..342 78..418 857 48.3 Plus