Clone GH20345 Report

Search the DGRC for GH20345

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:203
Well:45
Vector:pOT2
Associated Gene/TranscriptCG42305-RA
Protein status:GH20345.pep: gold
Sequenced Size:776

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG42305 2009-01-15 Manual selection by Sue Celniker

Clone Sequence Records

GH20345.complete Sequence

776 bp assembled on 2009-01-15

GenBank Submission: BT056319.1

> GH20345.complete
TCGATACCTAATCAGTGATTTTCAAAAATATTTTCCCCAAAGTGCATAAA
CAAATGTGTCAATGAAGACACCGGACACCAAAGCCAAGTTGCTGAATAAT
ATAAGTCTATCTAAACACCTGTCTTCCAAGAAAGGCGGCTCTCGCACTAG
TAACTGCGGCAATTGTCTGGAATTCTCCGTACTCACGCGTCTCTCCAGCG
TGCCCTGAATCCCCCTGTGGTCCAAGCTCACCCAAGCTCCTGTTGAAACT
TGAAAGAAATCATTGACAATGGTTCACCAAACTCGCACACCCAGCAAGGC
CATTCCCGCCAAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCG
GAAAGTACGCCGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACC
AGGCTCACGGCTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAA
TCAGATGGTCACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCT
AGGAGACGGATAGGGATGTGGATGCACGTCGTCGCTGGAGAGACCGCATT
GGAGGAGGGATATACCACTACTCGTACGATGACGATTGCTTGTCACCATA
CTTAAATGCAATAAATTCAATTTGAACAAATTTCCACATATTAATTAAGT
TTCATAAATCGCAGTAGTCACGTGCTGGGGCCGGGGAAATTTATTTATTG
CAACTTTTTTATTTTGCCAAATTAAATTACCCCAACTAAGCCTGCGAGCA
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH20345.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17325-RA 778 CG17325-RA 30..778 1..749 3745 100 Plus
CG42305-RB 778 CG42305-RB 30..778 1..749 3745 100 Plus
CG42305-RA 656 CG42305-RA 30..656 1..627 3135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18812061..18812706 104..749 3170 99.4 Plus
chr2L 23010047 chr2L 18811805..18811908 2..105 520 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18813296..18813942 104..750 3235 100 Plus
2L 23513712 2L 18813039..18813143 1..105 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18813296..18813942 104..750 3235 100 Plus
2L 23513712 2L 18813039..18813143 1..105 525 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:42:55 has no hits.

GH20345.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:43:46 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18811804..18811908 1..105 99 -> Plus
chr2L 18812063..18812706 106..749 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:59:01 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RB 1..234 269..502 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:28:40 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RB 1..234 269..502 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:37 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RA 1..234 269..502 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:29 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RA 1..234 269..502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-15 12:56:42 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG42305-RB 30..778 1..749 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:28:40 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG42305-RB 30..778 1..749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:37 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG42305-RB 31..779 1..749 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:29 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
CG17325-RA 31..779 1..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:46 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18813039..18813143 1..105 100 -> Plus
2L 18813298..18813941 106..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:46 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18813039..18813143 1..105 100 -> Plus
2L 18813298..18813941 106..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:46 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18813039..18813143 1..105 100 -> Plus
2L 18813298..18813941 106..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:37 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18813039..18813143 1..105 100 -> Plus
arm_2L 18813298..18813941 106..749 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:01:27 Download gff for GH20345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18813298..18813941 106..749 100   Plus
2L 18813039..18813143 1..105 100 -> Plus

GH20345.pep Sequence

Translation from 61 to 207

> GH20345.pep
MKTPDTKAKLLNNISLSKHLSSKKGGSRTSNCGNCLEFSVLTRLSSVP*

GH20345.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42305-PC 48 CG42305-PC 1..48 1..48 244 100 Plus
CG42305-PB 48 CG42305-PB 1..48 1..48 244 100 Plus
CG42305-PA 48 CG42305-PA 1..48 1..48 244 100 Plus

GH20345.hyp Sequence

Translation from 268 to 501

> GH20345.hyp
MVHQTRTPSKAIPAKHLSPMRTVEGLGGKYAVSSSPADSFLRNTRLTAQS
SSQQSAAFKYNQMVTHNREQFNNLHFC*

GH20345.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17325-PC 77 CG17325-PC 1..77 1..77 399 100 Plus
CG17325-PB 77 CG17325-PB 1..77 1..77 399 100 Plus
CG17325-PA 77 CG17325-PA 1..77 1..77 399 100 Plus