Clone GH20374 Report

Search the DGRC for GH20374

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:203
Well:74
Vector:pOT2
Associated Gene/Transcriptasparagine-synthetase-RA
Protein status:GH20374.pep: gold
Sequenced Size:1863

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
asparagine-synthetase 2008-04-29 Release 5.5 accounting
asparagine-synthetase 2008-04-29 Picked prior to 5.5
asparagine-synthetase 2008-08-15 Release 5.9 accounting
asparagine-synthetase 2008-12-18 5.12 accounting

Clone Sequence Records

GH20374.complete Sequence

1863 bp assembled on 2007-11-15

GenBank Submission: BT031199

> GH20374.complete
CAAAGTGCGGGCCGCTTCGTTAAAAAAAAATACAGTTGAAATTACTGCAA
AGATAAGCGAGAAATGTGCGGAATTTTTGCCATATTTTCGAGGGATGGGG
AGCCGATACCCACGCAAATCCTCCATGGAAGCAAACACAGTTTAAGGGAA
CTGGCCTATCGACAGAGTGGCAAGCATCGGCATCGGGGTCCAGATTCCAC
GGGGGTCTATGTGAATTCCTTGGAAGGGGTGGCCATGATTCATGAACGCC
TGCGAATCATTGGCGTGGAAATGGGCGACCAACCCTTCGTCTCTGAAGAT
GGTAACCTCATCCTGGTGGCCAATGGAGAGATCTACAATTATCTGGAGCT
TTCGGCTGAGATTGCGAAAAAGCGTGGCTCCTACAACCCCATGAGCGATT
GCCACGTGATACTGGAACTGTACCAGGATTATGGAAAGGATCTTCTGCAA
TACATCACTGGAATGTTTGCTTTTGCCTTGTACGATAGGAAGACCAAGGA
AGTGCTTCTTGCCCGAGACCCCTTTGGCATTATACCCATGTATGTGGGTG
AGGATGCGTCGGGAAACCTTTGGGTGGCCTCGGAGATGAAGTGCCTGGTG
GATACCTGCTCCAAAGTGGAGACTTTCACACCTGGCGAGGCTCGTTTCGG
TAAAGTTGGTGACTTTAAAACATGCTGGCAGTTTCAGCAGTCTTGGATCA
AGGAGGTGCCCACACAAACCTGCGAATTATCCCTACTGCGAGCCAACTTG
GAGTTTGCCGTGCGCAGTCATCTGCAGTGCGATGTTCAAATGGGAGCCCT
GCTATCCGGCGGAGTGGATTCCAGTCTTATAGCCTCCATAGCCACGAAGA
TAATGCGCGAACGGGATCCCAACTTCCGGCTGAAAACATTCTCTGTGGGT
CTAAGGGATGCACCCGACTTCCAGGCGGCCAGGAGTGTGGCCAAATATAT
AGACAGCGATCACAAGGAGATCATATTCGAGATCGACGAAGCTCTGGATG
GCATTAGGGATATTATTTACCACCTTGAAACCTATGATGTGACCACAGTG
AGATGTAGTTTGCCCATGCTGCTACTAGCTAGATATATCAAGAGCACAGG
CATCAAGATGATCCTCTCCGGCGAAGGAGCCGATGAGATCTTTGGAGGGT
ATTTATACTTCCACAAGGCCCCAAGCTACAACGATTTCCACGAGGAGCTG
GTGAAGAGAGTGCGCCAGCTGCATTTATCCGATTGTTTGCGGGCCAACAA
GGTGGCCATGGCCAAGGGCGTGGAGCTGCGAGTGCCCTTTCTGGACACGG
GGTTCGTTAACCATGTGATGCAAATCCGACCGGAGGATAAGATACCCGGA
CCCCTCAACAAATTCGGGGAAGTACAGCAAAAGCGATTGGAGAAGTATGT
CCTGCGAGCTGCCTTTGCGGATAACTATCTGCCCGATGAAGTCCTCTGGC
GCCAGAAGGAGCAGTTCTCCGACGGAGTGGGCTACGATTGGATCGACAGC
ATCCGCAGGGTGGCCACCAGCCATGTCAGCGATCAAGAATTCTCCGCAGC
CGCCCTACGCTTCCCCTTTAACACGCCCACAACCAAGGAGGCCTTCTACT
ATCGCTGCATTTTCGCCGAACAATTCCCCGGAGAATCGGCGGCCCGAACC
GTGGTCAGATGGGTGCCACGCCTCGATTGGGGCTGTCCGGAGGATCCATC
CGGACGGGCACAGGCCGTCCACCAGGTCAACAAAAACTGATAAGAGGACC
TTAAGTAAATTGGCAAGTCTGAGGAATTCCAACAATTATTTGCTGAGACA
TGCACAATAAATTTCTTTAATTGGTAGTCAATTCACTAAAAAAAAAAAAA
AAAAAAAAAAAAA

GH20374.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
asparagine-synthetase-RA 2046 asparagine-synthetase-RA 210..2046 1..1837 9185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21162143..21163979 1..1837 9185 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21173137..21174975 1..1839 9195 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21166237..21168075 1..1839 9195 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:17:13 has no hits.

GH20374.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:18:17 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21162143..21163979 1..1837 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:20 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 1..1677 64..1740 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:03 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 1..1677 64..1740 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:40:18 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 1..1677 64..1740 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:47:26 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 1..1677 64..1740 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:56:41 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 1..1677 64..1740 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:47:21 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 210..2046 1..1837 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:03 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 210..2046 1..1837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:40:18 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 20..1856 1..1837 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:47:26 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 210..2046 1..1837 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:41 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
asparagine-synthetase-RA 20..1856 1..1837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:18:17 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21173137..21174973 1..1837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:18:17 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21173137..21174973 1..1837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:18:17 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21173137..21174973 1..1837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:40:18 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21166237..21168073 1..1837 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:54:00 Download gff for GH20374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21166237..21168073 1..1837 100   Plus

GH20374.pep Sequence

Translation from 63 to 1739

> GH20374.pep
MCGIFAIFSRDGEPIPTQILHGSKHSLRELAYRQSGKHRHRGPDSTGVYV
NSLEGVAMIHERLRIIGVEMGDQPFVSEDGNLILVANGEIYNYLELSAEI
AKKRGSYNPMSDCHVILELYQDYGKDLLQYITGMFAFALYDRKTKEVLLA
RDPFGIIPMYVGEDASGNLWVASEMKCLVDTCSKVETFTPGEARFGKVGD
FKTCWQFQQSWIKEVPTQTCELSLLRANLEFAVRSHLQCDVQMGALLSGG
VDSSLIASIATKIMRERDPNFRLKTFSVGLRDAPDFQAARSVAKYIDSDH
KEIIFEIDEALDGIRDIIYHLETYDVTTVRCSLPMLLLARYIKSTGIKMI
LSGEGADEIFGGYLYFHKAPSYNDFHEELVKRVRQLHLSDCLRANKVAMA
KGVELRVPFLDTGFVNHVMQIRPEDKIPGPLNKFGEVQQKRLEKYVLRAA
FADNYLPDEVLWRQKEQFSDGVGYDWIDSIRRVATSHVSDQEFSAAALRF
PFNTPTTKEAFYYRCIFAEQFPGESAARTVVRWVPRLDWGCPEDPSGRAQ
AVHQVNKN*

GH20374.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24297-PA 558 GF24297-PA 1..558 1..558 2707 88.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16161-PA 558 GG16161-PA 1..558 1..558 2841 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14964-PA 565 GH14964-PA 1..554 1..554 2476 80.1 Plus
Dgri\GH14963-PA 565 GH14963-PA 1..554 1..553 2009 65.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
AsnS-PA 558 CG33486-PA 1..558 1..558 2935 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13125-PA 558 GI13125-PA 1..554 1..554 2436 80.5 Plus
Dmoj\GI13124-PA 560 GI13124-PA 1..553 1..553 1963 64 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15046-PA 563 GL15046-PA 1..560 1..558 2550 82.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29320-PA 563 GA29320-PA 1..560 1..558 2543 82.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22343-PA 550 GM22343-PA 1..549 1..558 2844 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14936-PA 559 GD14936-PA 1..558 1..558 2898 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13874-PA 559 GJ13874-PA 1..557 1..558 2484 81 Plus
Dvir\GJ13873-PA 559 GJ13873-PA 1..552 1..553 1941 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16811-PA 560 GK16811-PA 1..560 1..558 2334 76.3 Plus
Dwil\GK12497-PA 561 GK12497-PA 1..554 1..553 2014 65.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19730-PA 563 GE19730-PA 1..558 1..558 2829 93 Plus
Dyak\GE23257-PA 563 GE23257-PA 1..558 1..558 2823 92.8 Plus

GH20374.hyp Sequence

Translation from 63 to 1739

> GH20374.hyp
MCGIFAIFSRDGEPIPTQILHGSKHSLRELAYRQSGKHRHRGPDSTGVYV
NSLEGVAMIHERLRIIGVEMGDQPFVSEDGNLILVANGEIYNYLELSAEI
AKKRGSYNPMSDCHVILELYQDYGKDLLQYITGMFAFALYDRKTKEVLLA
RDPFGIIPMYVGEDASGNLWVASEMKCLVDTCSKVETFTPGEARFGKVGD
FKTCWQFQQSWIKEVPTQTCELSLLRANLEFAVRSHLQCDVQMGALLSGG
VDSSLIASIATKIMRERDPNFRLKTFSVGLRDAPDFQAARSVAKYIDSDH
KEIIFEIDEALDGIRDIIYHLETYDVTTVRCSLPMLLLARYIKSTGIKMI
LSGEGADEIFGGYLYFHKAPSYNDFHEELVKRVRQLHLSDCLRANKVAMA
KGVELRVPFLDTGFVNHVMQIRPEDKIPGPLNKFGEVQQKRLEKYVLRAA
FADNYLPDEVLWRQKEQFSDGVGYDWIDSIRRVATSHVSDQEFSAAALRF
PFNTPTTKEAFYYRCIFAEQFPGESAARTVVRWVPRLDWGCPEDPSGRAQ
AVHQVNKN*

GH20374.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
asparagine-synthetase-PA 558 CG33486-PA 1..558 1..558 2935 100 Plus