Clone GH20388 Report

Search the DGRC for GH20388

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:203
Well:88
Vector:pOT2
Associated Gene/TranscriptCG42322-RD
Protein status:GH20388.pep: gold
Preliminary Size:1980
Sequenced Size:2021

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15688 2001-01-01 Release 2 assignment
CG31203 2001-11-29 Blastp of sequenced clone
CG31203 2008-04-29 Release 5.5 accounting
CG42322 2008-08-15 Release 5.9 accounting
CG42322 2008-12-18 5.12 accounting

Clone Sequence Records

GH20388.complete Sequence

2021 bp (2021 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069167

> GH20388.complete
CGGAGAACGACGCTTTCCAGGACGGCCGCGTCGTGTGCTCTAGAAAAGGA
GAGTTGGAAAAACGCCAGCGGCAGCTAGCGCCAGAAACGCTGCTGTCACA
GTTTCCACCTAAGTCGAAGGAAAACAAGTCAAAAGGCTCGTTCAAGTGGC
AGTTGCTTTTTTTGGGCCAAGCCAGCGGACCGGATCACTATGAGCGACAG
AGGAGCTCGGTAATGATGATAGCATGACGCGCGACGGCGAAATTCCAGCT
ATTTTCAATCCGAAAAGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGA
CTCCTCGACGAATGGACCGTACAGCAACAATAGCACCGGCGGGGCGGGAG
CCAGCAGCAGCACGGCAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGC
AGTGGCAGCGGAGCAGCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTC
GAGCAATCCGCAAATAACCCACCAAGACTCGATATCGTCGAGCCAACAGG
ACCCCAATGAGGTGGTCATCATCCCGGCGGACACACCAACGAGCGCACCG
GGCAGCCACAATGCGGCGCACCACTTCGGAGGCGGCGACTCCAGCGACAC
CCAGACGGAGCAGCAGCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTC
GCTTCCGAAAGTTGCAGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCC
CGGAAGATGTACTTCGGAGTGTGCGTGACCATCCTGATGACCGCGTCGTG
GGTGGGGGCCACCCACTGCATTAAGTACATGTACAAGTACCGTGCTCCGT
ACGACGACTTGCTGAACGACGACCAGGACACGTCCTCGAGCCGCGCGGAC
CTGAGCACGGAGCTGGAGGATATACTGGCCATCAGCGACTCGTCGCTGCA
CCACGTCGAGGACGCCACCGAGATGTTCAACATACCACCGCGCCAGCCGG
TCTACTTCAGCGCCCCCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCG
CTGCTCTTCTTCCCCATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTG
CGAGAAGCTGAGCGACATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGC
GCGGCTTCACAGTGGGTCGCTTCCTCAATCGCTGCCTCTGCTTCTGCATT
TTGTGGCTGGTCACCACCTACCTGTACACCCTGTCCCTGCACGTCCTCTA
CGCCACGGATGCCCTGGCCCTGTTCGCCACCAACGTGGCATGCGTGTACC
TGCTATCCTGGGTGATCCTGCACGAGCAGTTCGTGGGCGTTAGAATCGTG
GCCATTATACTTTGCGACACAGGAATAGCGTTGCTAGCCTATATGGATGG
AATTACGGAAAGCCGAACCCTGAGCGGCGTGGTCTTGGCCACATTGGCTG
GAGCTGGCTATGCCGTGTTTAGGGTTATGTTCCGCAAGGTGATGGGCGAT
CCGCCGGTGAGCCAAATCGCCTTCATATTCACCGCCCTCGGCTTCCTCAA
CGCCCTGCTGCTGTGGCCCGTAGTGCTGGGACTCTACCTGACTGGCACGG
AAAGCCTCACCTCGGAGAGCATACCCTGGAACCTGCTGTTCGCGGCGAGC
CTCCTGCTCCTCGTTTTCCACGTTCTGATGCAGTTCAGTGCCGCCGTTAC
GTACAACATGTTTGTGACATTGGGTCTGATTACGGCTGTGCCCGTTTCTG
GCGCCCTCGATGTCATACTATACAGTGCGAACTTTGCTGGCATGAAACTG
GCCGGAGTTATCCTGATTGGCATCGGATTTTTCCTCGTCATGTTTCCCGC
CAACTGGCCAGACTATATAACGCGATTGTTGCGAAGCATCATAATGCTGG
GTCACAATGCGAGCGGTAGGCCAGCGCTTTGTAAACGAGATGCTATAGTC
ACGGGACCGTCCACCAGATATGCGCAGCGGCACATCACGCGCACGCACCA
TATAAGCTAAGAGTTTTGGACAAGTCACTGAAATGTACAGAAACCCAAAA
AAAAAAAAAAAAAAAAAAAAA

GH20388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RE 2092 CG42322-RE 249..2092 178..2021 9205 99.9 Plus
CG42322-RD 2068 CG42322-RD 225..2068 178..2021 9205 99.9 Plus
CG42322.k 2072 CG42322.k 229..2072 178..2021 9205 99.9 Plus
CG42322-RE 2092 CG42322-RE 31..208 1..178 890 100 Plus
CG42322-RD 2068 CG42322-RD 35..212 1..178 890 100 Plus
CG42322.k 2072 CG42322.k 11..188 1..178 890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16570689..16571218 177..706 2650 100 Plus
chr3R 27901430 chr3R 16571277..16571689 705..1117 2065 100 Plus
chr3R 27901430 chr3R 16573383..16573573 1423..1613 955 100 Plus
chr3R 27901430 chr3R 16571751..16571930 1115..1294 900 100 Plus
chr3R 27901430 chr3R 16564063..16564240 1..178 890 100 Plus
chr3R 27901430 chr3R 16577422..16577553 1862..1993 660 100 Plus
chr3R 27901430 chr3R 16573163..16573293 1295..1425 655 100 Plus
chr3R 27901430 chr3R 16574139..16574269 1703..1833 655 100 Plus
chr3R 27901430 chr3R 16573655..16573745 1613..1703 455 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20746774..20747303 177..706 2650 100 Plus
3R 32079331 3R 20747362..20747774 705..1117 2065 100 Plus
3R 32079331 3R 20749468..20749658 1423..1613 955 100 Plus
3R 32079331 3R 20747836..20748015 1115..1294 900 100 Plus
3R 32079331 3R 20740148..20740325 1..178 890 100 Plus
3R 32079331 3R 20753507..20753666 1862..2021 785 99.4 Plus
3R 32079331 3R 20749248..20749378 1295..1425 655 100 Plus
3R 32079331 3R 20750224..20750354 1703..1833 655 100 Plus
3R 32079331 3R 20749740..20749830 1613..1703 455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20487605..20488134 177..706 2650 100 Plus
3R 31820162 3R 20488193..20488605 705..1117 2065 100 Plus
3R 31820162 3R 20490299..20490489 1423..1613 955 100 Plus
3R 31820162 3R 20488667..20488846 1115..1294 900 100 Plus
3R 31820162 3R 20480979..20481156 1..178 890 100 Plus
3R 31820162 3R 20494338..20494497 1862..2021 785 99.3 Plus
3R 31820162 3R 20491055..20491185 1703..1833 655 100 Plus
3R 31820162 3R 20490079..20490209 1295..1425 655 100 Plus
3R 31820162 3R 20490571..20490661 1613..1703 455 100 Plus
3R 31820162 3R 20493176..20493206 1833..1863 155 100 Plus
Blast to na_te.dros performed 2019-03-16 16:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 155..200 322..367 122 73.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9185..9230 322..367 122 73.9 Plus

GH20388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:09:12 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16564063..16564239 1..177 100 -> Plus
chr3R 16570690..16571218 178..706 100 -> Plus
chr3R 16571279..16571687 707..1115 100 -> Plus
chr3R 16571752..16571930 1116..1294 100 -> Plus
chr3R 16573163..16573291 1295..1423 100 -> Plus
chr3R 16573384..16573573 1424..1613 100 -> Plus
chr3R 16573656..16573745 1614..1703 100 -> Plus
chr3R 16574140..16574269 1704..1833 100 -> Plus
chr3R 16576261..16576290 1834..1863 100 -> Plus
chr3R 16577424..16577556 1864..1996 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:19 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 1..1737 224..1960 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:41 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RF 1..1737 224..1960 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:02:20 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 1..1737 224..1960 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:25 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 1..1737 224..1960 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:20:59 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 1..1737 224..1960 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:18 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RG 35..2030 1..1996 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:41 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RG 35..2030 1..1996 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:02:20 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 41..221 1..180 98 -- Plus
CG42322-RL 234..2049 181..1996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:26 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RG 35..2030 1..1996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:20:59 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 41..221 1..180 98 -- Plus
CG42322-RL 234..2049 181..1996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:09:12 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20740148..20740324 1..177 100 -> Plus
3R 20746775..20747303 178..706 100 -> Plus
3R 20747364..20747772 707..1115 100 -> Plus
3R 20747837..20748015 1116..1294 100 -> Plus
3R 20749248..20749376 1295..1423 100 -> Plus
3R 20749469..20749658 1424..1613 100 -> Plus
3R 20749741..20749830 1614..1703 100 -> Plus
3R 20750225..20750354 1704..1833 100 -> Plus
3R 20752346..20752375 1834..1863 100 -> Plus
3R 20753509..20753641 1864..1996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:09:12 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20740148..20740324 1..177 100 -> Plus
3R 20746775..20747303 178..706 100 -> Plus
3R 20747364..20747772 707..1115 100 -> Plus
3R 20747837..20748015 1116..1294 100 -> Plus
3R 20749248..20749376 1295..1423 100 -> Plus
3R 20749469..20749658 1424..1613 100 -> Plus
3R 20749741..20749830 1614..1703 100 -> Plus
3R 20750225..20750354 1704..1833 100 -> Plus
3R 20752346..20752375 1834..1863 100 -> Plus
3R 20753509..20753641 1864..1996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:09:12 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20740148..20740324 1..177 100 -> Plus
3R 20746775..20747303 178..706 100 -> Plus
3R 20747364..20747772 707..1115 100 -> Plus
3R 20747837..20748015 1116..1294 100 -> Plus
3R 20749248..20749376 1295..1423 100 -> Plus
3R 20749469..20749658 1424..1613 100 -> Plus
3R 20749741..20749830 1614..1703 100 -> Plus
3R 20750225..20750354 1704..1833 100 -> Plus
3R 20752346..20752375 1834..1863 100 -> Plus
3R 20753509..20753641 1864..1996 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:02:20 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16565870..16566046 1..177 100 -> Plus
arm_3R 16572497..16573025 178..706 100 -> Plus
arm_3R 16573086..16573494 707..1115 100 -> Plus
arm_3R 16573559..16573737 1116..1294 100 -> Plus
arm_3R 16574970..16575098 1295..1423 100 -> Plus
arm_3R 16575191..16575380 1424..1613 100 -> Plus
arm_3R 16575463..16575552 1614..1703 100 -> Plus
arm_3R 16575947..16576076 1704..1833 100 -> Plus
arm_3R 16578068..16578097 1834..1863 100 -> Plus
arm_3R 16579231..16579363 1864..1996 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:30 Download gff for GH20388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20487606..20488134 178..706 100 -> Plus
3R 20488195..20488603 707..1115 100 -> Plus
3R 20488668..20488846 1116..1294 100 -> Plus
3R 20490079..20490207 1295..1423 100 -> Plus
3R 20490300..20490489 1424..1613 100 -> Plus
3R 20490572..20490661 1614..1703 100 -> Plus
3R 20491056..20491185 1704..1833 100 -> Plus
3R 20493177..20493206 1834..1863 100 -> Plus
3R 20494340..20494472 1864..1996 99   Plus
3R 20480979..20481155 1..177 100 -> Plus

GH20388.pep Sequence

Translation from 223 to 1959

> GH20388.pep
MTRDGEIPAIFNPKRVRTPSVVVTGDSSTNGPYSNNSTGGAGASSSTAVA
PGSSAQNGGSGSGAAGSCGFSNVLTSSNPQITHQDSISSSQQDPNEVVII
PADTPTSAPGSHNAAHHFGGGDSSDTQTEQQQANGHGEESELRFRKLQAC
KESCCSELARKMYFGVCVTILMTASWVGATHCIKYMYKYRAPYDDLLNDD
QDTSSSRADLSTELEDILAISDSSLHHVEDATEMFNIPPRQPVYFSAPFF
AAWFFTNFSLLFFPIYLLGLVSTRKCEKLSDILGDVLRGFRERGFTVGRF
LNRCLCFCILWLVTTYLYTLSLHVLYATDALALFATNVACVYLLSWVILH
EQFVGVRIVAIILCDTGIALLAYMDGITESRTLSGVVLATLAGAGYAVFR
VMFRKVMGDPPVSQIAFIFTALGFLNALLLWPVVLGLYLTGTESLTSESI
PWNLLFAASLLLLVFHVLMQFSAAVTYNMFVTLGLITAVPVSGALDVILY
SANFAGMKLAGVILIGIGFFLVMFPANWPDYITRLLRSIIMLGHNASGRP
ALCKRDAIVTGPSTRYAQRHITRTHHIS*

GH20388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16691-PA 589 GF16691-PA 1..589 1..578 2876 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24099-PA 575 GG24099-PA 1..575 1..578 3029 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17255-PA 578 GH17255-PA 1..578 1..578 2478 83.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-PD 578 CG31203-PE 1..578 1..578 2992 100 Plus
CG42322-PM 578 CG42322-PM 1..578 1..578 2992 100 Plus
CG42322-PL 578 CG42322-PL 1..578 1..578 2992 100 Plus
CG42322-PJ 733 CG42322-PJ 1..581 1..578 2778 93.8 Plus
CG42322-PI 733 CG42322-PI 1..581 1..578 2778 93.8 Plus
CG42322-PN 743 CG42322-PN 1..540 1..540 2777 99.4 Plus
CG8195-PA 449 CG8195-PA 180..401 305..522 157 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10592-PA 569 GI10592-PA 1..569 1..578 2407 84.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27349-PA 586 GL27349-PA 1..586 1..578 2517 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30096-PB 597 GA30096-PB 1..597 1..578 2611 87.3 Plus
Dpse\GA30096-PA 740 GA30096-PA 1..557 1..538 2399 86.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23133-PA 578 GM23133-PA 1..578 1..578 3071 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19372-PA 547 GD19372-PA 1..546 1..546 2898 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22948-PA 527 GJ22948-PA 108..527 161..578 1941 90.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22467-PA 580 GK22467-PA 1..580 1..578 2592 87.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25683-PA 579 GE25683-PA 1..579 1..578 3063 99.7 Plus

GH20388.hyp Sequence

Translation from 223 to 1959

> GH20388.hyp
MTRDGEIPAIFNPKRVRTPSVVVTGDSSTNGPYSNNSTGGAGASSSTAVA
PGSSAQNGGSGSGAAGSCGFSNVLTSSNPQITHQDSISSSQQDPNEVVII
PADTPTSAPGSHNAAHHFGGGDSSDTQTEQQQANGHGEESELRFRKLQAC
KESCCSELARKMYFGVCVTILMTASWVGATHCIKYMYKYRAPYDDLLNDD
QDTSSSRADLSTELEDILAISDSSLHHVEDATEMFNIPPRQPVYFSAPFF
AAWFFTNFSLLFFPIYLLGLVSTRKCEKLSDILGDVLRGFRERGFTVGRF
LNRCLCFCILWLVTTYLYTLSLHVLYATDALALFATNVACVYLLSWVILH
EQFVGVRIVAIILCDTGIALLAYMDGITESRTLSGVVLATLAGAGYAVFR
VMFRKVMGDPPVSQIAFIFTALGFLNALLLWPVVLGLYLTGTESLTSESI
PWNLLFAASLLLLVFHVLMQFSAAVTYNMFVTLGLITAVPVSGALDVILY
SANFAGMKLAGVILIGIGFFLVMFPANWPDYITRLLRSIIMLGHNASGRP
ALCKRDAIVTGPSTRYAQRHITRTHHIS*

GH20388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-PD 578 CG31203-PE 1..578 1..578 2992 100 Plus
CG42322-PM 578 CG42322-PM 1..578 1..578 2992 100 Plus
CG42322-PL 578 CG42322-PL 1..578 1..578 2992 100 Plus
CG42322-PJ 733 CG42322-PJ 1..581 1..578 2778 93.8 Plus
CG42322-PI 733 CG42322-PI 1..581 1..578 2778 93.8 Plus