BDGP Sequence Production Resources |
Search the DGRC for GH20388
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 203 |
Well: | 88 |
Vector: | pOT2 |
Associated Gene/Transcript | CG42322-RD |
Protein status: | GH20388.pep: gold |
Preliminary Size: | 1980 |
Sequenced Size: | 2021 |
Gene | Date | Evidence |
---|---|---|
CG15688 | 2001-01-01 | Release 2 assignment |
CG31203 | 2001-11-29 | Blastp of sequenced clone |
CG31203 | 2008-04-29 | Release 5.5 accounting |
CG42322 | 2008-08-15 | Release 5.9 accounting |
CG42322 | 2008-12-18 | 5.12 accounting |
2021 bp (2021 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069167
> GH20388.complete CGGAGAACGACGCTTTCCAGGACGGCCGCGTCGTGTGCTCTAGAAAAGGA GAGTTGGAAAAACGCCAGCGGCAGCTAGCGCCAGAAACGCTGCTGTCACA GTTTCCACCTAAGTCGAAGGAAAACAAGTCAAAAGGCTCGTTCAAGTGGC AGTTGCTTTTTTTGGGCCAAGCCAGCGGACCGGATCACTATGAGCGACAG AGGAGCTCGGTAATGATGATAGCATGACGCGCGACGGCGAAATTCCAGCT ATTTTCAATCCGAAAAGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGA CTCCTCGACGAATGGACCGTACAGCAACAATAGCACCGGCGGGGCGGGAG CCAGCAGCAGCACGGCAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGC AGTGGCAGCGGAGCAGCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTC GAGCAATCCGCAAATAACCCACCAAGACTCGATATCGTCGAGCCAACAGG ACCCCAATGAGGTGGTCATCATCCCGGCGGACACACCAACGAGCGCACCG GGCAGCCACAATGCGGCGCACCACTTCGGAGGCGGCGACTCCAGCGACAC CCAGACGGAGCAGCAGCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTC GCTTCCGAAAGTTGCAGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCC CGGAAGATGTACTTCGGAGTGTGCGTGACCATCCTGATGACCGCGTCGTG GGTGGGGGCCACCCACTGCATTAAGTACATGTACAAGTACCGTGCTCCGT ACGACGACTTGCTGAACGACGACCAGGACACGTCCTCGAGCCGCGCGGAC CTGAGCACGGAGCTGGAGGATATACTGGCCATCAGCGACTCGTCGCTGCA CCACGTCGAGGACGCCACCGAGATGTTCAACATACCACCGCGCCAGCCGG TCTACTTCAGCGCCCCCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCG CTGCTCTTCTTCCCCATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTG CGAGAAGCTGAGCGACATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGC GCGGCTTCACAGTGGGTCGCTTCCTCAATCGCTGCCTCTGCTTCTGCATT TTGTGGCTGGTCACCACCTACCTGTACACCCTGTCCCTGCACGTCCTCTA CGCCACGGATGCCCTGGCCCTGTTCGCCACCAACGTGGCATGCGTGTACC TGCTATCCTGGGTGATCCTGCACGAGCAGTTCGTGGGCGTTAGAATCGTG GCCATTATACTTTGCGACACAGGAATAGCGTTGCTAGCCTATATGGATGG AATTACGGAAAGCCGAACCCTGAGCGGCGTGGTCTTGGCCACATTGGCTG GAGCTGGCTATGCCGTGTTTAGGGTTATGTTCCGCAAGGTGATGGGCGAT CCGCCGGTGAGCCAAATCGCCTTCATATTCACCGCCCTCGGCTTCCTCAA CGCCCTGCTGCTGTGGCCCGTAGTGCTGGGACTCTACCTGACTGGCACGG AAAGCCTCACCTCGGAGAGCATACCCTGGAACCTGCTGTTCGCGGCGAGC CTCCTGCTCCTCGTTTTCCACGTTCTGATGCAGTTCAGTGCCGCCGTTAC GTACAACATGTTTGTGACATTGGGTCTGATTACGGCTGTGCCCGTTTCTG GCGCCCTCGATGTCATACTATACAGTGCGAACTTTGCTGGCATGAAACTG GCCGGAGTTATCCTGATTGGCATCGGATTTTTCCTCGTCATGTTTCCCGC CAACTGGCCAGACTATATAACGCGATTGTTGCGAAGCATCATAATGCTGG GTCACAATGCGAGCGGTAGGCCAGCGCTTTGTAAACGAGATGCTATAGTC ACGGGACCGTCCACCAGATATGCGCAGCGGCACATCACGCGCACGCACCA TATAAGCTAAGAGTTTTGGACAAGTCACTGAAATGTACAGAAACCCAAAA AAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42322-RE | 2092 | CG42322-RE | 249..2092 | 178..2021 | 9205 | 99.9 | Plus |
CG42322-RD | 2068 | CG42322-RD | 225..2068 | 178..2021 | 9205 | 99.9 | Plus |
CG42322.k | 2072 | CG42322.k | 229..2072 | 178..2021 | 9205 | 99.9 | Plus |
CG42322-RE | 2092 | CG42322-RE | 31..208 | 1..178 | 890 | 100 | Plus |
CG42322-RD | 2068 | CG42322-RD | 35..212 | 1..178 | 890 | 100 | Plus |
CG42322.k | 2072 | CG42322.k | 11..188 | 1..178 | 890 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16570689..16571218 | 177..706 | 2650 | 100 | Plus |
chr3R | 27901430 | chr3R | 16571277..16571689 | 705..1117 | 2065 | 100 | Plus |
chr3R | 27901430 | chr3R | 16573383..16573573 | 1423..1613 | 955 | 100 | Plus |
chr3R | 27901430 | chr3R | 16571751..16571930 | 1115..1294 | 900 | 100 | Plus |
chr3R | 27901430 | chr3R | 16564063..16564240 | 1..178 | 890 | 100 | Plus |
chr3R | 27901430 | chr3R | 16577422..16577553 | 1862..1993 | 660 | 100 | Plus |
chr3R | 27901430 | chr3R | 16573163..16573293 | 1295..1425 | 655 | 100 | Plus |
chr3R | 27901430 | chr3R | 16574139..16574269 | 1703..1833 | 655 | 100 | Plus |
chr3R | 27901430 | chr3R | 16573655..16573745 | 1613..1703 | 455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20746774..20747303 | 177..706 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 20747362..20747774 | 705..1117 | 2065 | 100 | Plus |
3R | 32079331 | 3R | 20749468..20749658 | 1423..1613 | 955 | 100 | Plus |
3R | 32079331 | 3R | 20747836..20748015 | 1115..1294 | 900 | 100 | Plus |
3R | 32079331 | 3R | 20740148..20740325 | 1..178 | 890 | 100 | Plus |
3R | 32079331 | 3R | 20753507..20753666 | 1862..2021 | 785 | 99.4 | Plus |
3R | 32079331 | 3R | 20749248..20749378 | 1295..1425 | 655 | 100 | Plus |
3R | 32079331 | 3R | 20750224..20750354 | 1703..1833 | 655 | 100 | Plus |
3R | 32079331 | 3R | 20749740..20749830 | 1613..1703 | 455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20487605..20488134 | 177..706 | 2650 | 100 | Plus |
3R | 31820162 | 3R | 20488193..20488605 | 705..1117 | 2065 | 100 | Plus |
3R | 31820162 | 3R | 20490299..20490489 | 1423..1613 | 955 | 100 | Plus |
3R | 31820162 | 3R | 20488667..20488846 | 1115..1294 | 900 | 100 | Plus |
3R | 31820162 | 3R | 20480979..20481156 | 1..178 | 890 | 100 | Plus |
3R | 31820162 | 3R | 20494338..20494497 | 1862..2021 | 785 | 99.3 | Plus |
3R | 31820162 | 3R | 20491055..20491185 | 1703..1833 | 655 | 100 | Plus |
3R | 31820162 | 3R | 20490079..20490209 | 1295..1425 | 655 | 100 | Plus |
3R | 31820162 | 3R | 20490571..20490661 | 1613..1703 | 455 | 100 | Plus |
3R | 31820162 | 3R | 20493176..20493206 | 1833..1863 | 155 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..200 | 322..367 | 122 | 73.9 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9230 | 322..367 | 122 | 73.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16564063..16564239 | 1..177 | 100 | -> | Plus |
chr3R | 16570690..16571218 | 178..706 | 100 | -> | Plus |
chr3R | 16571279..16571687 | 707..1115 | 100 | -> | Plus |
chr3R | 16571752..16571930 | 1116..1294 | 100 | -> | Plus |
chr3R | 16573163..16573291 | 1295..1423 | 100 | -> | Plus |
chr3R | 16573384..16573573 | 1424..1613 | 100 | -> | Plus |
chr3R | 16573656..16573745 | 1614..1703 | 100 | -> | Plus |
chr3R | 16574140..16574269 | 1704..1833 | 100 | -> | Plus |
chr3R | 16576261..16576290 | 1834..1863 | 100 | -> | Plus |
chr3R | 16577424..16577556 | 1864..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RD | 1..1737 | 224..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RF | 1..1737 | 224..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RL | 1..1737 | 224..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RD | 1..1737 | 224..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RL | 1..1737 | 224..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RG | 35..2030 | 1..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RG | 35..2030 | 1..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RL | 41..221 | 1..180 | 98 | -- | Plus |
CG42322-RL | 234..2049 | 181..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RG | 35..2030 | 1..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42322-RL | 41..221 | 1..180 | 98 | -- | Plus |
CG42322-RL | 234..2049 | 181..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20740148..20740324 | 1..177 | 100 | -> | Plus |
3R | 20746775..20747303 | 178..706 | 100 | -> | Plus |
3R | 20747364..20747772 | 707..1115 | 100 | -> | Plus |
3R | 20747837..20748015 | 1116..1294 | 100 | -> | Plus |
3R | 20749248..20749376 | 1295..1423 | 100 | -> | Plus |
3R | 20749469..20749658 | 1424..1613 | 100 | -> | Plus |
3R | 20749741..20749830 | 1614..1703 | 100 | -> | Plus |
3R | 20750225..20750354 | 1704..1833 | 100 | -> | Plus |
3R | 20752346..20752375 | 1834..1863 | 100 | -> | Plus |
3R | 20753509..20753641 | 1864..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20740148..20740324 | 1..177 | 100 | -> | Plus |
3R | 20746775..20747303 | 178..706 | 100 | -> | Plus |
3R | 20747364..20747772 | 707..1115 | 100 | -> | Plus |
3R | 20747837..20748015 | 1116..1294 | 100 | -> | Plus |
3R | 20749248..20749376 | 1295..1423 | 100 | -> | Plus |
3R | 20749469..20749658 | 1424..1613 | 100 | -> | Plus |
3R | 20749741..20749830 | 1614..1703 | 100 | -> | Plus |
3R | 20750225..20750354 | 1704..1833 | 100 | -> | Plus |
3R | 20752346..20752375 | 1834..1863 | 100 | -> | Plus |
3R | 20753509..20753641 | 1864..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20740148..20740324 | 1..177 | 100 | -> | Plus |
3R | 20746775..20747303 | 178..706 | 100 | -> | Plus |
3R | 20747364..20747772 | 707..1115 | 100 | -> | Plus |
3R | 20747837..20748015 | 1116..1294 | 100 | -> | Plus |
3R | 20749248..20749376 | 1295..1423 | 100 | -> | Plus |
3R | 20749469..20749658 | 1424..1613 | 100 | -> | Plus |
3R | 20749741..20749830 | 1614..1703 | 100 | -> | Plus |
3R | 20750225..20750354 | 1704..1833 | 100 | -> | Plus |
3R | 20752346..20752375 | 1834..1863 | 100 | -> | Plus |
3R | 20753509..20753641 | 1864..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16565870..16566046 | 1..177 | 100 | -> | Plus |
arm_3R | 16572497..16573025 | 178..706 | 100 | -> | Plus |
arm_3R | 16573086..16573494 | 707..1115 | 100 | -> | Plus |
arm_3R | 16573559..16573737 | 1116..1294 | 100 | -> | Plus |
arm_3R | 16574970..16575098 | 1295..1423 | 100 | -> | Plus |
arm_3R | 16575191..16575380 | 1424..1613 | 100 | -> | Plus |
arm_3R | 16575463..16575552 | 1614..1703 | 100 | -> | Plus |
arm_3R | 16575947..16576076 | 1704..1833 | 100 | -> | Plus |
arm_3R | 16578068..16578097 | 1834..1863 | 100 | -> | Plus |
arm_3R | 16579231..16579363 | 1864..1996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20487606..20488134 | 178..706 | 100 | -> | Plus |
3R | 20488195..20488603 | 707..1115 | 100 | -> | Plus |
3R | 20488668..20488846 | 1116..1294 | 100 | -> | Plus |
3R | 20490079..20490207 | 1295..1423 | 100 | -> | Plus |
3R | 20490300..20490489 | 1424..1613 | 100 | -> | Plus |
3R | 20490572..20490661 | 1614..1703 | 100 | -> | Plus |
3R | 20491056..20491185 | 1704..1833 | 100 | -> | Plus |
3R | 20493177..20493206 | 1834..1863 | 100 | -> | Plus |
3R | 20494340..20494472 | 1864..1996 | 99 | Plus | |
3R | 20480979..20481155 | 1..177 | 100 | -> | Plus |
Translation from 223 to 1959
> GH20388.pep MTRDGEIPAIFNPKRVRTPSVVVTGDSSTNGPYSNNSTGGAGASSSTAVA PGSSAQNGGSGSGAAGSCGFSNVLTSSNPQITHQDSISSSQQDPNEVVII PADTPTSAPGSHNAAHHFGGGDSSDTQTEQQQANGHGEESELRFRKLQAC KESCCSELARKMYFGVCVTILMTASWVGATHCIKYMYKYRAPYDDLLNDD QDTSSSRADLSTELEDILAISDSSLHHVEDATEMFNIPPRQPVYFSAPFF AAWFFTNFSLLFFPIYLLGLVSTRKCEKLSDILGDVLRGFRERGFTVGRF LNRCLCFCILWLVTTYLYTLSLHVLYATDALALFATNVACVYLLSWVILH EQFVGVRIVAIILCDTGIALLAYMDGITESRTLSGVVLATLAGAGYAVFR VMFRKVMGDPPVSQIAFIFTALGFLNALLLWPVVLGLYLTGTESLTSESI PWNLLFAASLLLLVFHVLMQFSAAVTYNMFVTLGLITAVPVSGALDVILY SANFAGMKLAGVILIGIGFFLVMFPANWPDYITRLLRSIIMLGHNASGRP ALCKRDAIVTGPSTRYAQRHITRTHHIS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16691-PA | 589 | GF16691-PA | 1..589 | 1..578 | 2876 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24099-PA | 575 | GG24099-PA | 1..575 | 1..578 | 3029 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17255-PA | 578 | GH17255-PA | 1..578 | 1..578 | 2478 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42322-PD | 578 | CG31203-PE | 1..578 | 1..578 | 2992 | 100 | Plus |
CG42322-PM | 578 | CG42322-PM | 1..578 | 1..578 | 2992 | 100 | Plus |
CG42322-PL | 578 | CG42322-PL | 1..578 | 1..578 | 2992 | 100 | Plus |
CG42322-PJ | 733 | CG42322-PJ | 1..581 | 1..578 | 2778 | 93.8 | Plus |
CG42322-PI | 733 | CG42322-PI | 1..581 | 1..578 | 2778 | 93.8 | Plus |
CG42322-PN | 743 | CG42322-PN | 1..540 | 1..540 | 2777 | 99.4 | Plus |
CG8195-PA | 449 | CG8195-PA | 180..401 | 305..522 | 157 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10592-PA | 569 | GI10592-PA | 1..569 | 1..578 | 2407 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27349-PA | 586 | GL27349-PA | 1..586 | 1..578 | 2517 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30096-PB | 597 | GA30096-PB | 1..597 | 1..578 | 2611 | 87.3 | Plus |
Dpse\GA30096-PA | 740 | GA30096-PA | 1..557 | 1..538 | 2399 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23133-PA | 578 | GM23133-PA | 1..578 | 1..578 | 3071 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19372-PA | 547 | GD19372-PA | 1..546 | 1..546 | 2898 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22948-PA | 527 | GJ22948-PA | 108..527 | 161..578 | 1941 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22467-PA | 580 | GK22467-PA | 1..580 | 1..578 | 2592 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25683-PA | 579 | GE25683-PA | 1..579 | 1..578 | 3063 | 99.7 | Plus |
Translation from 223 to 1959
> GH20388.hyp MTRDGEIPAIFNPKRVRTPSVVVTGDSSTNGPYSNNSTGGAGASSSTAVA PGSSAQNGGSGSGAAGSCGFSNVLTSSNPQITHQDSISSSQQDPNEVVII PADTPTSAPGSHNAAHHFGGGDSSDTQTEQQQANGHGEESELRFRKLQAC KESCCSELARKMYFGVCVTILMTASWVGATHCIKYMYKYRAPYDDLLNDD QDTSSSRADLSTELEDILAISDSSLHHVEDATEMFNIPPRQPVYFSAPFF AAWFFTNFSLLFFPIYLLGLVSTRKCEKLSDILGDVLRGFRERGFTVGRF LNRCLCFCILWLVTTYLYTLSLHVLYATDALALFATNVACVYLLSWVILH EQFVGVRIVAIILCDTGIALLAYMDGITESRTLSGVVLATLAGAGYAVFR VMFRKVMGDPPVSQIAFIFTALGFLNALLLWPVVLGLYLTGTESLTSESI PWNLLFAASLLLLVFHVLMQFSAAVTYNMFVTLGLITAVPVSGALDVILY SANFAGMKLAGVILIGIGFFLVMFPANWPDYITRLLRSIIMLGHNASGRP ALCKRDAIVTGPSTRYAQRHITRTHHIS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42322-PD | 578 | CG31203-PE | 1..578 | 1..578 | 2992 | 100 | Plus |
CG42322-PM | 578 | CG42322-PM | 1..578 | 1..578 | 2992 | 100 | Plus |
CG42322-PL | 578 | CG42322-PL | 1..578 | 1..578 | 2992 | 100 | Plus |
CG42322-PJ | 733 | CG42322-PJ | 1..581 | 1..578 | 2778 | 93.8 | Plus |
CG42322-PI | 733 | CG42322-PI | 1..581 | 1..578 | 2778 | 93.8 | Plus |