Clone GH20514 Report

Search the DGRC for GH20514

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:205
Well:14
Vector:pOT2
Associated Gene/TranscriptCG11703-RA
Protein status:GH20514.pep: gold
Preliminary Size:1391
Sequenced Size:1296

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11703 2001-01-01 Release 2 assignment
CG11703 2003-01-01 Sim4 clustering to Release 3
CG11703 2003-01-14 Blastp of sequenced clone
CG11703 2008-04-29 Release 5.5 accounting
CG11703 2008-08-15 Release 5.9 accounting
CG11703 2008-12-18 5.12 accounting

Clone Sequence Records

GH20514.complete Sequence

1296 bp (1296 high quality bases) assembled on 2003-01-14

GenBank Submission: AY069168

> GH20514.complete
CTACAAGCTTCGAATATTTCCCACTTACGCCCACGTAACCAGTAGCCAAA
TCAGAACCGGAACGATCGCCACGATGCCGGAGGACGTAATGGTGCCCGCT
GGGGACTACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCG
CAAGAAGGACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACA
AATTGTTCGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTAC
CTGGTACTATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCAT
CTTTATGCTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTC
CGCCGGGTCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTAC
TTTACGCACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGA
TTTCCTGAACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCA
ACCAGGACACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATC
AAGCTGAACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGA
TGACTTGCCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGC
TGGGCAACACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCC
AAGCCCGAAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAA
CATGAGAGGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCG
AGAATGCGAAGACCTTCTTCAGCTGCAAGGTGTGGGCCCGAAACATACCC
ATCGACGATGACTACCAGGGCATGGGAATTATCAAGTTCGCGCTGAGCAT
GCGCACCGATGATGACGGCAATCCGGATTTCGAAAGGCCCTCCACTCGTA
AGGCACCCCGCGAAATAGATCTCGAATCCGAAGAGCTCGTTCCCGAACCG
CCATCTCCAAATCGACCAGAAAGTATGCTCGGAGGATTAGAATTGCCGCC
ACCGCCAGAGGATGAGAAGGACGCACTAGACGCAATGGGAAATGATGCCA
AGAAGGAGGAAATGACGGAGCCACCAAGCTTATAAGAATTGGAATCTATT
ACTACTATTATTACCATTTGGAATTCTAGACAAAATTTGCTTATGTGCAA
ATTACCTATCTGTGTAGGTGTTCTTTAGGTTATTTAATTTCGAATAAGAA
TTGGGGGTAACCCACATTTTCACATTTCAAAAAAAAAAAAAAAAAA

GH20514.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-RA 1278 CG11703-RA 1..1278 1..1278 6390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15050839..15052118 1278..1 6335 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19226898..19228180 1283..1 6415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18967729..18969011 1283..1 6415 100 Minus
Blast to na_te.dros performed 2019-03-16 07:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 1140..1259 311..197 128 61.2 Minus

GH20514.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:34:55 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15050839..15052118 1..1278 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:28 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1062 74..1135 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:44 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1062 74..1135 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:38 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1062 74..1135 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:34 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1062 74..1135 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:05 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1062 74..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:14:01 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1278 1..1278 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:44 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1278 1..1278 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:38 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1278 1..1278 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:34 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1278 1..1278 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:05 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1278 1..1278 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:34:55 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19226903..19228180 1..1278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:34:55 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19226903..19228180 1..1278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:34:55 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19226903..19228180 1..1278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:38 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15052625..15053902 1..1278 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:57 Download gff for GH20514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18967734..18969011 1..1278 100   Minus

GH20514.hyp Sequence

Translation from 0 to 1134

> GH20514.hyp
YKLRIFPTYAHVTSSQIRTGTIATMPEDVMVPAGDYKLVKQIRRNQETRR
KKDLPWSKRIFDIDEHKLFGRTALGWMRITGFYLVLYALIVCIVAFWLGI
FMLAIIDPNKPRWLKGPPGLSMVPNQNRSVLAYFTHIMSEVNPIADRIDD
FLNKLNDNAIDFFADFNQDTTWGYATEKPTVFIKLNKVIGYVPETYDTPD
DLPKEAPASLQDTVGKLGNTPKIWITCEVTNGPKPEMVFYPGPYFEASEN
MRGVTRVVAIQMNKMPENAKTFFSCKVWARNIPIDDDYQGMGIIKFALSM
RTDDDGNPDFERPSTRKAPREIDLESEELVPEPPSPNRPESMLGGLELPP
PPEDEKDALDAMGNDAKKEEMTEPPSL*

GH20514.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-PA 353 CG11703-PA 1..353 25..377 1897 100 Plus
nrv2-PG 323 CG9261-PG 18..320 44..298 239 25 Plus
nrv2-PF 323 CG9261-PF 18..320 44..298 239 25 Plus
nrv2-PC 323 CG9261-PC 18..320 44..298 239 25 Plus
nrv1-PB 309 CG9258-PB 20..289 52..282 230 24.9 Plus

GH20514.pep Sequence

Translation from 73 to 1134

> GH20514.pep
MPEDVMVPAGDYKLVKQIRRNQETRRKKDLPWSKRIFDIDEHKLFGRTAL
GWMRITGFYLVLYALIVCIVAFWLGIFMLAIIDPNKPRWLKGPPGLSMVP
NQNRSVLAYFTHIMSEVNPIADRIDDFLNKLNDNAIDFFADFNQDTTWGY
ATEKPTVFIKLNKVIGYVPETYDTPDDLPKEAPASLQDTVGKLGNTPKIW
ITCEVTNGPKPEMVFYPGPYFEASENMRGVTRVVAIQMNKMPENAKTFFS
CKVWARNIPIDDDYQGMGIIKFALSMRTDDDGNPDFERPSTRKAPREIDL
ESEELVPEPPSPNRPESMLGGLELPPPPEDEKDALDAMGNDAKKEEMTEP
PSL*

GH20514.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18471-PA 386 GF18471-PA 1..337 1..351 793 42.1 Plus
Dana\GF18472-PA 378 GF18472-PA 1..297 1..295 766 45.3 Plus
Dana\GF14479-PA 323 GF14479-PA 21..320 23..274 240 24.9 Plus
Dana\GF14480-PA 309 GF14480-PA 20..306 28..274 207 23.8 Plus
Dana\GF14332-PA 311 GF14332-PA 24..308 34..274 202 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16108-PA 345 GG16108-PA 1..345 1..352 1398 75 Plus
Dere\GG23580-PA 323 GG23580-PA 21..320 23..274 242 24.9 Plus
Dere\GG23582-PA 309 GG23582-PA 20..289 28..258 213 24.5 Plus
Dere\GG21302-PA 311 GG21302-PA 24..296 34..261 202 24.7 Plus
Dere\GG16097-PA 311 GG16097-PA 47..283 54..260 192 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22397-PA 277 GH22397-PA 1..276 1..276 695 43.5 Plus
Dgri\GH22396-PA 310 GH22396-PA 1..296 1..277 272 26.9 Plus
Dgri\GH10786-PA 323 GH10786-PA 21..308 23..261 242 27.1 Plus
Dgri\GH10787-PA 309 GH10787-PA 20..289 28..258 235 26.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-PA 353 CG11703-PA 1..353 1..353 1897 100 Plus
nrv2-PG 323 CG9261-PG 18..320 20..274 239 25 Plus
nrv2-PF 323 CG9261-PF 18..320 20..274 239 25 Plus
nrv2-PC 323 CG9261-PC 18..320 20..274 239 25 Plus
nrv1-PB 309 CG9258-PB 20..289 28..258 230 24.9 Plus
nrv1-PA 309 CG9258-PA 20..289 28..258 230 24.9 Plus
nrv2-PE 322 CG9261-PE 20..319 25..274 224 23.8 Plus
nrv2-PA 322 CG9261-PA 20..319 25..274 224 23.8 Plus
nrv2-PD 322 CG9261-PD 20..319 25..274 224 23.8 Plus
nrv3-PD 311 CG8663-PD 22..296 32..261 201 24.7 Plus
nrv3-PC 311 CG8663-PC 22..296 32..261 201 24.7 Plus
nrv3-PA 311 CG8663-PA 22..296 32..261 201 24.7 Plus
nrv3-PE 313 CG8663-PE 22..298 32..261 198 24.9 Plus
CG5250-PA 311 CG5250-PA 1..283 1..260 191 23.4 Plus
CG33310-PB 876 CG33310-PB 557..862 10..281 166 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16930-PA 276 GI16930-PA 1..275 1..278 513 41.6 Plus
Dmoj\GI24482-PA 315 GI24482-PA 1..285 1..261 246 26.5 Plus
Dmoj\GI17298-PA 323 GI17298-PA 18..308 20..261 235 25.5 Plus
Dmoj\GI17299-PA 309 GI17299-PA 9..306 17..274 228 24.9 Plus
Dmoj\GI12264-PA 310 GI12264-PA 24..306 34..287 194 23.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11976-PA 625 GL11976-PA 1..312 1..309 788 49 Plus
Dper\GL25960-PA 323 GL25960-PA 21..320 23..274 236 25.2 Plus
Dper\GL25223-PA 321 GL25223-PA 24..301 23..258 213 24.3 Plus
Dper\GL25961-PA 309 GL25961-PA 20..306 28..274 200 23.4 Plus
Dper\GL11975-PA 275 GL11975-PA 9..243 58..261 197 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11151-PA 623 GA11151-PA 1..312 1..309 785 48.7 Plus
Dpse\GA21652-PA 323 GA21652-PA 21..320 23..274 236 25.2 Plus
Dpse\GA22950-PA 321 GA22950-PA 32..301 33..258 208 23.7 Plus
Dpse\GA21650-PA 309 GA21650-PA 20..306 28..274 196 23.1 Plus
Dpse\GA18763-PA 275 GA18763-PA 9..243 58..261 194 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26920-PA 347 GM26920-PA 1..347 1..353 1644 90.7 Plus
Dsec\GM13825-PA 323 GM13825-PA 21..320 23..274 245 24.9 Plus
Dsec\GM13836-PA 309 GM13836-PA 25..289 33..258 227 25.4 Plus
Dsec\GM23414-PA 311 GM23414-PA 24..296 34..261 202 24.7 Plus
Dsec\GM26919-PA 311 GM26919-PA 1..283 1..260 178 23.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20125-PA 347 GD20125-PA 1..347 1..353 1653 91.2 Plus
Dsim\GD22540-PA 340 GD22540-PA 18..337 20..274 236 24.6 Plus
Dsim\GD22541-PA 309 GD22541-PA 20..289 28..258 235 25.6 Plus
Dsim\GD20124-PA 311 GD20124-PA 1..283 1..260 182 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17105-PA 274 GJ17105-PA 1..269 1..274 670 48.5 Plus
Dvir\GJ24547-PA 317 GJ24547-PA 1..312 1..290 262 26.2 Plus
Dvir\GJ15658-PA 323 GJ15658-PA 24..320 28..274 227 23.7 Plus
Dvir\GJ15669-PA 309 GJ15669-PA 25..289 33..258 202 24.9 Plus
Dvir\GJ17853-PA 311 GJ17853-PA 24..296 34..261 193 24 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13483-PA 345 GK13483-PA 1..281 1..283 667 47 Plus
Dwil\GK24210-PA 323 GK24210-PA 22..320 26..274 258 26.2 Plus
Dwil\GK18955-PA 306 GK18955-PA 1..295 1..276 256 24.9 Plus
Dwil\GK24211-PA 309 GK24211-PA 24..289 32..258 222 25.3 Plus
Dwil\GK18742-PA 311 GK18742-PA 24..296 34..261 195 24.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25144-PA 348 GE25144-PA 1..348 1..352 1384 75 Plus
Dyak\GE18402-PA 323 GE18402-PA 18..320 20..274 241 25.3 Plus
Dyak\GE18403-PA 309 GE18403-PA 20..289 28..258 217 24.5 Plus
Dyak\GE25143-PA 311 GE25143-PA 49..283 58..260 194 26.7 Plus
Dyak\GE12918-PA 311 GE12918-PA 24..296 34..261 191 24 Plus