Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH20547.complete Sequence
1221 bp (1221 high quality bases) assembled on 2002-05-15
GenBank Submission: AY119535
> GH20547.complete
ATCAAAACAAAATTAAATACACACCCGAATAACACAAATGAATTATGCCA
GATTCGAAAGTAGTGGCGAGTGATAGAAGGAAGAGTAATAGCCATGCCAG
CCTGCTCCTGACCACATCCTCCACTCATGTGCAGCACGCGGATAGCCATC
GAGGTAATGCCAGGACACCGGATGAGAACGATCAAAATAGCTCGCTGCTC
TCCAATGACTTTGTCCTGATGCTAGACTGCTCGCCAAGTCCACAGGATGT
GTTCTGCGAAAATACGCCGGAGTTTAGGACTTCGTGGCTGTGGCTCAACA
AACTGACCACCATGCATTGCCACACTCTCTACGATCTGCGCATGCGCAAC
GCGTACATGAGTCACTTCAGTGTTTGCCTAAACCAACGGCGACTGACTGG
CGTTTTCGAGGAGCCTCCGCCAGCGGAGTTGGCTTGGGTCGACTTCACGG
AGAAGCCAGAGGATCAGCAATGCCCAAACCTGACTGAAATGCAGCGTTCC
TGTGATCTGAATCAATCTTCTCTAGCCGCAGTGCCCTCCTCCGCTTTGTC
ATGTGACTGCAGCGGTAAACGGTCGACGTCTGAGTACTGGGACACCTTCT
CGAATTGTGCTCGTCCTTCCGGCGGGACAAGTGTCCCATCCATTTTAAAA
CCACAAGTGCAGAGGAGCCGACGGCTCCTCCGTCCCGTACACACGACAAG
TGATGACGAAGTGCGTCAGCTTTACAAAAACCAAAAAGCGAATTTCCGTT
TAAACCATTCCTCTTCTCCCTCTGCCACGCAATCGTCCACCAGTCGTTCC
CAATCCTCGCCGCCCAAATTTTCACCCAGAAGTAACCAGAAGCCCAACGC
TTTTCAAAATTCCGATAGTCAGAAGTCACCCGAAGATGTTCGAAAACGTA
TGATCGATTTGATGGAGCTTATTCGAATGGAACTGCGTGGTGAACCGATT
CCGGATAACAAGGACATTTTGGAGGAGGAGTTGAAAAGATATAGGAATTT
TTTCGATCTTCATTTGCAGGATGGTTCGGATTTTGACCCACATTCCAACT
CGGGGCGCGTTCGTGTGCTTCTCAACATGCAAAAAGATCTGATAAGGATG
CTCAAAGAGGATTTGGCATAATGACATATGTTTCAGAATCAGTTTCATAA
TAAAAGATGCCATTTTGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
GH20547.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32295-RA | 1156 | CG32295-RA | 2..1156 | 1..1155 | 5775 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 2525316..2526488 | 1173..1 | 5865 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2525798..2526971 | 1174..1 | 5870 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 2525798..2526971 | 1174..1 | 5870 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 19:08:20 has no hits.
GH20547.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:09:16 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 2525316..2526488 | 1..1173 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:30 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 1..1077 | 45..1121 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:39 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 1..1077 | 45..1121 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:42:57 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 1..1077 | 45..1121 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:13 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 1..1077 | 45..1121 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:58 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 1..1077 | 45..1121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:33 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 2..1156 | 1..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:39 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 3..1175 | 1..1173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:42:57 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 3..1175 | 1..1173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:13 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 2..1156 | 1..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:58 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32295-RA | 3..1175 | 1..1173 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:16 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2525799..2526971 | 1..1173 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:16 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2525799..2526971 | 1..1173 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:16 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2525799..2526971 | 1..1173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:42:57 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2525799..2526971 | 1..1173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:36 Download gff for
GH20547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2525799..2526971 | 1..1173 | 100 | | Minus |
GH20547.hyp Sequence
Translation from 44 to 1120
> GH20547.hyp
MPDSKVVASDRRKSNSHASLLLTTSSTHVQHADSHRGNARTPDENDQNSS
LLSNDFVLMLDCSPSPQDVFCENTPEFRTSWLWLNKLTTMHCHTLYDLRM
RNAYMSHFSVCLNQRRLTGVFEEPPPAELAWVDFTEKPEDQQCPNLTEMQ
RSCDLNQSSLAAVPSSALSCDCSGKRSTSEYWDTFSNCARPSGGTSVPSI
LKPQVQRSRRLLRPVHTTSDDEVRQLYKNQKANFRLNHSSSPSATQSSTS
RSQSSPPKFSPRSNQKPNAFQNSDSQKSPEDVRKRMIDLMELIRMELRGE
PIPDNKDILEEELKRYRNFFDLHLQDGSDFDPHSNSGRVRVLLNMQKDLI
RMLKEDLA*
GH20547.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32295-PA | 358 | CG32295-PA | 1..358 | 1..358 | 1889 | 100 | Plus |
GH20547.pep Sequence
Translation from 44 to 1120
> GH20547.pep
MPDSKVVASDRRKSNSHASLLLTTSSTHVQHADSHRGNARTPDENDQNSS
LLSNDFVLMLDCSPSPQDVFCENTPEFRTSWLWLNKLTTMHCHTLYDLRM
RNAYMSHFSVCLNQRRLTGVFEEPPPAELAWVDFTEKPEDQQCPNLTEMQ
RSCDLNQSSLAAVPSSALSCDCSGKRSTSEYWDTFSNCARPSGGTSVPSI
LKPQVQRSRRLLRPVHTTSDDEVRQLYKNQKANFRLNHSSSPSATQSSTS
RSQSSPPKFSPRSNQKPNAFQNSDSQKSPEDVRKRMIDLMELIRMELRGE
PIPDNKDILEEELKRYRNFFDLHLQDGSDFDPHSNSGRVRVLLNMQKDLI
RMLKEDLA*
GH20547.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG14511-PA | 2479 | GG14511-PA | 500..843 | 3..343 | 1188 | 72.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH15755-PA | 1963 | GH15755-PA | 80..333 | 51..300 | 311 | 33.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32295-PA | 358 | CG32295-PA | 1..358 | 1..358 | 1889 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL26938-PA | 350 | GL26938-PA | 15..104 | 45..134 | 235 | 46.7 | Plus |
Dper\GL22948-PA | 1179 | GL22948-PA | 35..117 | 52..134 | 225 | 45.8 | Plus |
Dper\GL22950-PA | 166 | GL22950-PA | 4..86 | 52..134 | 216 | 44.6 | Plus |
Dper\GL25725-PA | 471 | GL25725-PA | 19..107 | 46..134 | 211 | 42.7 | Plus |
Dper\GL25718-PA | 477 | GL25718-PA | 18..142 | 9..134 | 211 | 36.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA28821-PA | 425 | GA28821-PA | 73..170 | 37..134 | 274 | 50 | Plus |
Dpse\GA25413-PA | 477 | GA25413-PA | 54..143 | 45..134 | 238 | 46.7 | Plus |
Dpse\GA22374-PA | 1334 | GA22374-PA | 4..86 | 52..134 | 225 | 45.8 | Plus |
Dpse\GA25407-PA | 477 | GA25407-PA | 18..142 | 9..134 | 211 | 36.5 | Plus |
Dpse\GA25408-PA | 468 | GA25408-PA | 19..107 | 46..134 | 209 | 42.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14116-PA | 2308 | GM14116-PA | 505..683 | 3..178 | 829 | 88.3 | Plus |