Clone GH20547 Report

Search the DGRC for GH20547

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:205
Well:47
Vector:pOT2
Associated Gene/TranscriptCG32295-RA
Protein status:GH20547.pep: gold
Preliminary Size:1310
Sequenced Size:1221

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16757 2001-01-01 Release 2 assignment
CG32295 2002-05-15 Blastp of sequenced clone
CG32295 2003-01-01 Sim4 clustering to Release 3
CG32295 2008-04-29 Release 5.5 accounting
CG32295 2008-08-15 Release 5.9 accounting
CG32295 2008-12-18 5.12 accounting

Clone Sequence Records

GH20547.complete Sequence

1221 bp (1221 high quality bases) assembled on 2002-05-15

GenBank Submission: AY119535

> GH20547.complete
ATCAAAACAAAATTAAATACACACCCGAATAACACAAATGAATTATGCCA
GATTCGAAAGTAGTGGCGAGTGATAGAAGGAAGAGTAATAGCCATGCCAG
CCTGCTCCTGACCACATCCTCCACTCATGTGCAGCACGCGGATAGCCATC
GAGGTAATGCCAGGACACCGGATGAGAACGATCAAAATAGCTCGCTGCTC
TCCAATGACTTTGTCCTGATGCTAGACTGCTCGCCAAGTCCACAGGATGT
GTTCTGCGAAAATACGCCGGAGTTTAGGACTTCGTGGCTGTGGCTCAACA
AACTGACCACCATGCATTGCCACACTCTCTACGATCTGCGCATGCGCAAC
GCGTACATGAGTCACTTCAGTGTTTGCCTAAACCAACGGCGACTGACTGG
CGTTTTCGAGGAGCCTCCGCCAGCGGAGTTGGCTTGGGTCGACTTCACGG
AGAAGCCAGAGGATCAGCAATGCCCAAACCTGACTGAAATGCAGCGTTCC
TGTGATCTGAATCAATCTTCTCTAGCCGCAGTGCCCTCCTCCGCTTTGTC
ATGTGACTGCAGCGGTAAACGGTCGACGTCTGAGTACTGGGACACCTTCT
CGAATTGTGCTCGTCCTTCCGGCGGGACAAGTGTCCCATCCATTTTAAAA
CCACAAGTGCAGAGGAGCCGACGGCTCCTCCGTCCCGTACACACGACAAG
TGATGACGAAGTGCGTCAGCTTTACAAAAACCAAAAAGCGAATTTCCGTT
TAAACCATTCCTCTTCTCCCTCTGCCACGCAATCGTCCACCAGTCGTTCC
CAATCCTCGCCGCCCAAATTTTCACCCAGAAGTAACCAGAAGCCCAACGC
TTTTCAAAATTCCGATAGTCAGAAGTCACCCGAAGATGTTCGAAAACGTA
TGATCGATTTGATGGAGCTTATTCGAATGGAACTGCGTGGTGAACCGATT
CCGGATAACAAGGACATTTTGGAGGAGGAGTTGAAAAGATATAGGAATTT
TTTCGATCTTCATTTGCAGGATGGTTCGGATTTTGACCCACATTCCAACT
CGGGGCGCGTTCGTGTGCTTCTCAACATGCAAAAAGATCTGATAAGGATG
CTCAAAGAGGATTTGGCATAATGACATATGTTTCAGAATCAGTTTCATAA
TAAAAGATGCCATTTTGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

GH20547.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32295-RA 1156 CG32295-RA 2..1156 1..1155 5775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2525316..2526488 1173..1 5865 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2525798..2526971 1174..1 5870 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2525798..2526971 1174..1 5870 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:08:20 has no hits.

GH20547.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:09:16 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2525316..2526488 1..1173 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:30 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 1..1077 45..1121 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:39 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 1..1077 45..1121 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:42:57 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 1..1077 45..1121 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:13 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 1..1077 45..1121 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:58 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 1..1077 45..1121 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:33 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 2..1156 1..1155 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:39 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 3..1175 1..1173 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:42:57 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 3..1175 1..1173 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:13 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 2..1156 1..1155 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:58 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
CG32295-RA 3..1175 1..1173 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:16 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2525799..2526971 1..1173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:16 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2525799..2526971 1..1173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:16 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2525799..2526971 1..1173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:42:57 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2525799..2526971 1..1173 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:36 Download gff for GH20547.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2525799..2526971 1..1173 100   Minus

GH20547.hyp Sequence

Translation from 44 to 1120

> GH20547.hyp
MPDSKVVASDRRKSNSHASLLLTTSSTHVQHADSHRGNARTPDENDQNSS
LLSNDFVLMLDCSPSPQDVFCENTPEFRTSWLWLNKLTTMHCHTLYDLRM
RNAYMSHFSVCLNQRRLTGVFEEPPPAELAWVDFTEKPEDQQCPNLTEMQ
RSCDLNQSSLAAVPSSALSCDCSGKRSTSEYWDTFSNCARPSGGTSVPSI
LKPQVQRSRRLLRPVHTTSDDEVRQLYKNQKANFRLNHSSSPSATQSSTS
RSQSSPPKFSPRSNQKPNAFQNSDSQKSPEDVRKRMIDLMELIRMELRGE
PIPDNKDILEEELKRYRNFFDLHLQDGSDFDPHSNSGRVRVLLNMQKDLI
RMLKEDLA*

GH20547.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32295-PA 358 CG32295-PA 1..358 1..358 1889 100 Plus

GH20547.pep Sequence

Translation from 44 to 1120

> GH20547.pep
MPDSKVVASDRRKSNSHASLLLTTSSTHVQHADSHRGNARTPDENDQNSS
LLSNDFVLMLDCSPSPQDVFCENTPEFRTSWLWLNKLTTMHCHTLYDLRM
RNAYMSHFSVCLNQRRLTGVFEEPPPAELAWVDFTEKPEDQQCPNLTEMQ
RSCDLNQSSLAAVPSSALSCDCSGKRSTSEYWDTFSNCARPSGGTSVPSI
LKPQVQRSRRLLRPVHTTSDDEVRQLYKNQKANFRLNHSSSPSATQSSTS
RSQSSPPKFSPRSNQKPNAFQNSDSQKSPEDVRKRMIDLMELIRMELRGE
PIPDNKDILEEELKRYRNFFDLHLQDGSDFDPHSNSGRVRVLLNMQKDLI
RMLKEDLA*

GH20547.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14511-PA 2479 GG14511-PA 500..843 3..343 1188 72.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15755-PA 1963 GH15755-PA 80..333 51..300 311 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32295-PA 358 CG32295-PA 1..358 1..358 1889 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26938-PA 350 GL26938-PA 15..104 45..134 235 46.7 Plus
Dper\GL22948-PA 1179 GL22948-PA 35..117 52..134 225 45.8 Plus
Dper\GL22950-PA 166 GL22950-PA 4..86 52..134 216 44.6 Plus
Dper\GL25725-PA 471 GL25725-PA 19..107 46..134 211 42.7 Plus
Dper\GL25718-PA 477 GL25718-PA 18..142 9..134 211 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28821-PA 425 GA28821-PA 73..170 37..134 274 50 Plus
Dpse\GA25413-PA 477 GA25413-PA 54..143 45..134 238 46.7 Plus
Dpse\GA22374-PA 1334 GA22374-PA 4..86 52..134 225 45.8 Plus
Dpse\GA25407-PA 477 GA25407-PA 18..142 9..134 211 36.5 Plus
Dpse\GA25408-PA 468 GA25408-PA 19..107 46..134 209 42.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14116-PA 2308 GM14116-PA 505..683 3..178 829 88.3 Plus