Clone GH20554 Report

Search the DGRC for GH20554

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:205
Well:54
Vector:pOT2
Associated Gene/TranscriptCG10494-RB
Protein status:GH20554.pep: gold
Preliminary Size:2088
Sequenced Size:2180

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10494 2001-01-01 Release 2 assignment
CG10494 2001-09-19 Blastp of sequenced clone
CG10494 2003-01-01 Sim4 clustering to Release 3
CG10494 2008-04-29 Release 5.5 accounting
CG10494 2008-08-15 Release 5.9 accounting
CG10494 2008-12-18 5.12 accounting

Clone Sequence Records

GH20554.complete Sequence

2180 bp (2180 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058427

> GH20554.complete
TTTTGTTATTGTTATGATTTGATCAAGCTAAAAAAAAACCGATCAAATAT
AAATATATATTTATTGATTTCATTGCGCGATTTAAGCATAACCATTTGAA
AATGAGCAAGTTCTCGCTCTTCAATGGCAACGATGAGGACGAGCACGAAA
CGGAGCAGAAATACGCACACCTTATGAGTGGATCTGGGAAATGCGAGTCA
CTCGGTGTCGGAAAATAGTTCTGGGAAAGCGAGTCGCTGCAAGTGGACCA
GCGCAAAGGTGGAGACCTTTCTGGAAATCATTCACCAACTTAAACTGCAA
GCTGCTCTTCGAAGGCCGCGAAGCAATGCAAAGGTGTTTCGTATGGTGTC
CAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGTCCAAAGCATCTGAGAG
TCAAGTTCCATCAGATGCGGCGTCAGTATGCGAGAGCTCGGAATGGCGGC
GAACCATTCGAGCACTTTGAGGCGGTGCACGAGTTGATGCAGGGAGAAGA
TGTATCTGATCTGGATGAAGAGGCGCTAGAGAGTGACAGCGATATGGAGG
CCGACGAGGACCAGTCCGGCATGATCTCAGAAACCGAAGGGGACGATGCT
TTGGATGCCTCAGGATCTTCAGTTAACATCGTCGCCCGCTGCAAGTGGGC
AGAGGGCGAAGTGGACCTCCTCCTAGACCTGATCCACACACTTGGACTGC
GAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGTCTTCAAGCTGCTGTCC
AAGGAGATGGCAAAACGCAACTGCCACAAGGGTGCTGAGAAGCTGCGCAT
CAAGTTCCAGCAGCTGCGGCGATTGTACAACAAGGTCAAGAACGGCACGG
GGAAAACGTTCGAGCATTTTGAGGCGATGCGACTGGTCCTGGATCCCACC
GAAGAGGAGGCGGCCGCAGATGCTGAAGCGGAAGCCCATCTGAGCAGCGC
AAGCGATAGTGATTTCAATGACAGTGACGAGGAAGAGGGTGATGCATCAC
AGAGAAGCGGAGCGCACTTTTGGACAGACGAAGAGGTTGATTCGTTTCTA
CTCATCATTCGGGACAATGGTTTCTTTCGCGCCTTGGATGGCTCAAGGAA
GCGCAACTTCCAGACCCTGGTGCACATTTCCAACATCCTGGCTAAGCAGG
ACATCAAACGCACGCCACACCAGCTGCGCAATAAACTAAGGCTGCTCTGC
AAGCGTCATCGAGAGGCCAAGGAGCACGGGCTAGATAATGTACGCATTCT
GCCTCGCCACTTTGAGCTTTTCGATGAACTGATTCAGGCGCCGCGGGAGA
ACAGAGAAAGTGCCATCAGCAGGCTCATTCGCATCAGCAAGCCTTCCTTT
CTCAAGCCGCCAGGCAAACCAAGCGTTCCGCTGGAAAGTGACAGCGACAA
CTCCAGCTCCACCTGCGATCTCCTAAGAGCGGCAGCCGATAGCGAGGACT
ACGTGGACGCCATCGAGATGGAGGCTGAACCAACGCCGATTGAAGCACTC
ACTGCAATCATAGAAGGTCAAAAGCAGCTGCTTGCGCAGATCAAAACTAC
CAACGAAAGCTTCTTGCGGCAGCAACGCGAGCAGCAGCATCAATTTTTGG
AACAAGTATCGGAACTGATGCATCGAGATCGAGAGGAGACCCTGCGCAGG
ATCAGCGAAATGCTGCAACCGAAGTAATGGAAACATAGAACTCAAGCTTC
TAAAACTTTTATTGAATTGAATTCGAAGTTATTGCAAAAAGTTGTCATTA
TTTATATATATTATATGTATGTATTCTATATTCAATATCGTGTGTGTGTG
TGTATCCTGTTTTTGTGACAGTGTCCTGTGTCTAGAATTTATTCCTCATT
CATTGTGAACAGAATGTTGGTTTGAAGTTACTCGCAATTCGCAATTGTCT
ACGATTTATCTAGGGTTTTGTATAAGTATATACGTAATTTTGAGAGATTT
TTCGTTTTTTATTTGATATGCTACATTGTTATTTTTTGGGATTAAGTTAA
CAGTTGGATTCGTTTTAGGTTTTAACATTAAGCGAAAATGCTCGTTAGTT
TTTAGTTTTTGTTCTGCTTGTGTCATCTGTATACACATATGTATATATTT
TGTATATTGTTCGGTTTACAACAACTAAGCAAGCTCGTCATAAAATATGT
GTTGCACTCCAAAAAAAAAAAAAAAAAAAA

GH20554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-RB 2838 CG10494-RB 1..2171 1..2171 10855 100 Plus
CG10494-RA 2881 CG10494-RA 48..2214 1..2171 10770 99.8 Plus
CG10494.a 1785 CG10494.a 48..1724 1..1681 8290 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17403270..17404421 2160..1011 5605 99.3 Minus
chr2R 21145070 chr2R 17404955..17405369 595..181 2060 99.8 Minus
chr2R 21145070 chr2R 17404479..17404896 1012..595 2000 98.6 Minus
chr2R 21145070 chr2R 17405424..17405605 181..1 860 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:00:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21516763..21517923 2171..1011 5805 100 Minus
2R 25286936 2R 21517981..21518398 1012..595 2090 100 Minus
2R 25286936 2R 21518457..21518871 595..181 2075 100 Minus
2R 25286936 2R 21518926..21519106 181..1 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21517962..21519122 2171..1011 5805 100 Minus
2R 25260384 2R 21519180..21519597 1012..595 2090 100 Minus
2R 25260384 2R 21519656..21520070 595..181 2075 100 Minus
2R 25260384 2R 21520125..21520305 181..1 905 100 Minus
Blast to na_te.dros performed 2019-03-16 09:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 1312..1377 2107..2043 129 70.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6844 1519..1593 124 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2897 1542..1638 114 61.9 Plus

GH20554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:50:47 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17403270..17404419 1013..2160 99 <- Minus
chr2R 17404479..17404895 596..1012 98 <- Minus
chr2R 17404955..17405368 182..595 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:33 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 102..1677 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:35 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 102..1677 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:18 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 102..1677 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:47 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 102..1677 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:59 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 1..1572 102..1677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:11 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 1..2160 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:34 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 1..2160 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:18 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 1..2160 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:47 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 1..2160 1..2160 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:59 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 1..2160 1..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:47 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21518926..21519106 1..181 100   Minus
2R 21516774..21517921 1013..2160 100 <- Minus
2R 21517981..21518397 596..1012 100 <- Minus
2R 21518457..21518870 182..595 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:47 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21518926..21519106 1..181 100   Minus
2R 21516774..21517921 1013..2160 100 <- Minus
2R 21517981..21518397 596..1012 100 <- Minus
2R 21518457..21518870 182..595 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:47 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21518926..21519106 1..181 100   Minus
2R 21516774..21517921 1013..2160 100 <- Minus
2R 21517981..21518397 596..1012 100 <- Minus
2R 21518457..21518870 182..595 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:18 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17404279..17405426 1013..2160 100 <- Minus
arm_2R 17405486..17405902 596..1012 100 <- Minus
arm_2R 17405962..17406375 182..595 100 <- Minus
arm_2R 17406431..17406611 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:57 Download gff for GH20554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21517973..21519120 1013..2160 100 <- Minus
2R 21519180..21519596 596..1012 100 <- Minus
2R 21519656..21520069 182..595 100 <- Minus
2R 21520125..21520305 1..181 100   Minus

GH20554.pep Sequence

Translation from 342 to 1676

> GH20554.pep
MVSREMARRNCPKSPKHLRVKFHQMRRQYARARNGGEPFEHFEAVHELMQ
GEDVSDLDEEALESDSDMEADEDQSGMISETEGDDALDASGSSVNIVARC
KWAEGEVDLLLDLIHTLGLRAALLQKRNAKVFKLLSKEMAKRNCHKGAEK
LRIKFQQLRRLYNKVKNGTGKTFEHFEAMRLVLDPTEEEAAADAEAEAHL
SSASDSDFNDSDEEEGDASQRSGAHFWTDEEVDSFLLIIRDNGFFRALDG
SRKRNFQTLVHISNILAKQDIKRTPHQLRNKLRLLCKRHREAKEHGLDNV
RILPRHFELFDELIQAPRENRESAISRLIRISKPSFLKPPGKPSVPLESD
SDNSSSTCDLLRAAADSEDYVDAIEMEAEPTPIEALTAIIEGQKQLLAQI
KTTNESFLRQQREQQHQFLEQVSELMHRDREETLRRISEMLQPK*

GH20554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12092-PA 523 GF12092-PA 82..523 1..444 1584 71.7 Plus
Dana\GF12092-PA 523 GF12092-PA 40..246 92..293 292 35.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20773-PA 523 GG20773-PA 80..523 1..444 2124 93 Plus
Dere\GG20773-PA 523 GG20773-PA 34..232 89..284 282 38.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20053-PA 620 GH20053-PA 175..620 1..444 1131 53.5 Plus
Dgri\GH20053-PA 620 GH20053-PA 41..368 2..324 381 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PA 523 CG10494-PA 80..523 1..444 2265 100 Plus
CG10494-PB 444 CG10494-PB 1..444 1..444 2265 100 Plus
CG10494-PA 523 CG10494-PA 28..271 83..324 298 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20463-PA 628 GI20463-PA 187..628 1..444 1032 51.4 Plus
Dmoj\GI20463-PA 628 GI20463-PA 38..355 2..296 388 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17489-PA 500 GL17489-PA 71..497 1..444 1179 59.5 Plus
Dper\GL17489-PA 500 GL17489-PA 38..227 101..296 235 36 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24178-PA 503 GA24178-PA 71..500 1..444 1193 59.9 Plus
Dpse\GA24178-PA 503 GA24178-PA 38..230 101..296 237 36 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15717-PA 523 GM15717-PA 80..523 1..444 2303 97.3 Plus
Dsec\GM15717-PA 523 GM15717-PA 28..245 83..293 273 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25195-PA 523 GD25195-PA 80..523 1..444 2317 98 Plus
Dsim\GD25195-PA 523 GD25195-PA 28..245 83..293 280 34.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22312-PA 627 GJ22312-PA 186..627 1..444 1057 53.1 Plus
Dvir\GJ22312-PA 627 GJ22312-PA 59..374 18..320 364 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20739-PA 544 GK20739-PA 83..540 1..441 1225 57.2 Plus
Dwil\GK20739-PA 544 GK20739-PA 40..252 91..293 316 38 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13710-PA 523 GE13710-PA 80..523 1..444 2130 92.3 Plus
Dyak\GE13710-PA 523 GE13710-PA 28..232 83..284 269 37 Plus

GH20554.hyp Sequence

Translation from 342 to 1676

> GH20554.hyp
MVSREMARRNCPKSPKHLRVKFHQMRRQYARARNGGEPFEHFEAVHELMQ
GEDVSDLDEEALESDSDMEADEDQSGMISETEGDDALDASGSSVNIVARC
KWAEGEVDLLLDLIHTLGLRAALLQKRNAKVFKLLSKEMAKRNCHKGAEK
LRIKFQQLRRLYNKVKNGTGKTFEHFEAMRLVLDPTEEEAAADAEAEAHL
SSASDSDFNDSDEEEGDASQRSGAHFWTDEEVDSFLLIIRDNGFFRALDG
SRKRNFQTLVHISNILAKQDIKRTPHQLRNKLRLLCKRHREAKEHGLDNV
RILPRHFELFDELIQAPRENRESAISRLIRISKPSFLKPPGKPSVPLESD
SDNSSSTCDLLRAAADSEDYVDAIEMEAEPTPIEALTAIIEGQKQLLAQI
KTTNESFLRQQREQQHQFLEQVSELMHRDREETLRRISEMLQPK*

GH20554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PA 523 CG10494-PA 80..523 1..444 2265 100 Plus
CG10494-PB 444 CG10494-PB 1..444 1..444 2265 100 Plus
CG10494-PA 523 CG10494-PA 28..271 83..324 298 34.8 Plus