BDGP Sequence Production Resources |
Search the DGRC for GH20621
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 206 |
Well: | 21 |
Vector: | pOT2 |
Associated Gene/Transcript | CG5945-RA |
Protein status: | GH20621.pep: gold |
Preliminary Size: | 925 |
Sequenced Size: | 928 |
Gene | Date | Evidence |
---|---|---|
CG5945 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5945 | 2002-06-13 | Blastp of sequenced clone |
CG5945 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5945 | 2008-04-29 | Release 5.5 accounting |
CG5945 | 2008-08-15 | Release 5.9 accounting |
CG5945 | 2008-12-18 | 5.12 accounting |
928 bp (928 high quality bases) assembled on 2002-06-13
GenBank Submission: AY122123
> GH20621.complete TTCTAGCAGTAGGTTGAAAGTCGAATTCGAGTCCCAAAAAGGATATAGTT TAGTAGTAGAATGTATTGTACTATTGGATTGCTCAGCCTGCTGGCCTTGG GATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTGCCAAAA TGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCTGTTTAA CACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAATCGAGC CCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCTAGTGGC ACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGGCTTCTC CTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACAAGGTGA AACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGCAGCTAT AAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGGTGAATT CAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATGGTGAGG TCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATCGACTCA AAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATTTGCAGA TCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATTGGCGCG ATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAACCCCTT ATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGACCAGTT TCTCAAGGAGTAGCTCAATTTGCGGTTGGATTTAATAGAATGATGATGGT TAAATAGAAAATAAATTTTTCCATTAGGTGCTATTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5945-RA | 1082 | CG5945-RA | 151..1038 | 1..888 | 4440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 13238996..13239371 | 139..514 | 1865 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 13240164..13240388 | 661..885 | 1125 | 100 | Plus |
chr2L | 23010047 | chr2L | 13239424..13239570 | 515..661 | 735 | 100 | Plus |
chr2L | 23010047 | chr2L | 13238798..13238936 | 1..139 | 695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13240335..13240710 | 139..514 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13241503..13241730 | 661..888 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 13240763..13240909 | 515..661 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13240137..13240275 | 1..139 | 695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13240335..13240710 | 139..514 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13241503..13241730 | 661..888 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 13240763..13240909 | 515..661 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13240137..13240275 | 1..139 | 695 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 13239424..13239570 | 515..661 | 100 | -> | Plus |
chr2L | 13238798..13238936 | 1..139 | 100 | -> | Plus |
chr2L | 13238997..13239371 | 140..514 | 99 | -> | Plus |
chr2L | 13240165..13240388 | 662..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 1..753 | 61..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 1..753 | 61..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 1..753 | 61..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 1..753 | 61..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 1..753 | 61..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 5..889 | 1..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 5..889 | 1..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 19..903 | 1..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 5..889 | 1..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5945-RA | 19..903 | 1..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13240763..13240909 | 515..661 | 100 | -> | Plus |
2L | 13241504..13241727 | 662..885 | 100 | Plus | |
2L | 13240336..13240710 | 140..514 | 100 | -> | Plus |
2L | 13240137..13240275 | 1..139 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13240763..13240909 | 515..661 | 100 | -> | Plus |
2L | 13241504..13241727 | 662..885 | 100 | Plus | |
2L | 13240336..13240710 | 140..514 | 100 | -> | Plus |
2L | 13240137..13240275 | 1..139 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13240763..13240909 | 515..661 | 100 | -> | Plus |
2L | 13241504..13241727 | 662..885 | 100 | Plus | |
2L | 13240336..13240710 | 140..514 | 100 | -> | Plus |
2L | 13240137..13240275 | 1..139 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 13240137..13240275 | 1..139 | 100 | -> | Plus |
arm_2L | 13240336..13240710 | 140..514 | 100 | -> | Plus |
arm_2L | 13240763..13240909 | 515..661 | 100 | -> | Plus |
arm_2L | 13241504..13241727 | 662..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13240336..13240710 | 140..514 | 100 | -> | Plus |
2L | 13240763..13240909 | 515..661 | 100 | -> | Plus |
2L | 13241504..13241727 | 662..885 | 100 | Plus | |
2L | 13240137..13240275 | 1..139 | 100 | -> | Plus |
Translation from 60 to 812
> GH20621.hyp MYCTIGLLSLLALGCSAAPTDKNYFADLPKCSTEEDQLGECVKQLFNTLT PRLKDGNPELRIEPYEPLHLNRTSFQYSSGTVNGRITVRNAKIYGFSSNR AKEVSVKLNGDKVKLRLVTQMPKLNIVGSYKADMQVNQLQLKPKGEFNVT LLDVEAITVTDGEVYEKDGHRFFRLKNIDSKPKIKDLVIKANGIFADPEL DKIALNVANQYWRDIYGIMLPETRQFWQPLMLRMFNEAFELVPIDQFLKE *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5945-PB | 250 | CG5945-PB | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5945-PA | 250 | CG5945-PA | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5867-PA | 262 | CG5867-PA | 38..259 | 27..248 | 506 | 39.6 | Plus |
CG16820-PA | 309 | CG16820-PA | 84..307 | 27..248 | 351 | 30.8 | Plus |
CG10407-PB | 259 | CG10407-PB | 38..222 | 28..213 | 199 | 27.3 | Plus |
Translation from 60 to 812
> GH20621.pep MYCTIGLLSLLALGCSAAPTDKNYFADLPKCSTEEDQLGECVKQLFNTLT PRLKDGNPELRIEPYEPLHLNRTSFQYSSGTVNGRITVRNAKIYGFSSNR AKEVSVKLNGDKVKLRLVTQMPKLNIVGSYKADMQVNQLQLKPKGEFNVT LLDVEAITVTDGEVYEKDGHRFFRLKNIDSKPKIKDLVIKANGIFADPEL DKIALNVANQYWRDIYGIMLPETRQFWQPLMLRMFNEAFELVPIDQFLKE *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23101-PA | 255 | GF23101-PA | 1..255 | 1..250 | 1034 | 77.3 | Plus |
Dana\GF23097-PA | 260 | GF23097-PA | 35..259 | 26..250 | 505 | 39.1 | Plus |
Dana\GF23102-PA | 315 | GF23102-PA | 94..313 | 31..248 | 357 | 31.8 | Plus |
Dana\GF11323-PA | 261 | GF11323-PA | 40..233 | 31..233 | 180 | 24.6 | Plus |
Dana\GF18921-PA | 246 | GF18921-PA | 6..243 | 3..247 | 173 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23829-PA | 250 | GG23829-PA | 1..250 | 1..250 | 1268 | 92.8 | Plus |
Dere\GG23828-PA | 262 | GG23828-PA | 10..259 | 8..248 | 512 | 37.2 | Plus |
Dere\GG23830-PA | 307 | GG23830-PA | 86..305 | 31..248 | 361 | 31.8 | Plus |
Dere\GG20212-PA | 259 | GG20212-PA | 41..234 | 31..233 | 187 | 26.1 | Plus |
Dere\GG11299-PA | 251 | GG11299-PA | 6..249 | 7..248 | 176 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25092-PA | 259 | GH25092-PA | 2..256 | 1..249 | 766 | 54.9 | Plus |
Dgri\GH25091-PA | 265 | GH25091-PA | 40..259 | 26..245 | 545 | 41.8 | Plus |
Dgri\GH25093-PA | 283 | GH25093-PA | 71..281 | 40..248 | 331 | 32.2 | Plus |
Dgri\GH18842-PA | 260 | GH18842-PA | 39..255 | 31..248 | 191 | 23.7 | Plus |
Dgri\GH16705-PA | 271 | GH16705-PA | 5..255 | 5..250 | 180 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5945-PB | 250 | CG5945-PB | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5945-PA | 250 | CG5945-PA | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5867-PA | 262 | CG5867-PA | 38..259 | 27..248 | 506 | 39.6 | Plus |
CG16820-PA | 309 | CG16820-PA | 84..307 | 27..248 | 351 | 30.8 | Plus |
CG10407-PB | 259 | CG10407-PB | 38..222 | 28..213 | 199 | 27.3 | Plus |
CG10407-PA | 259 | CG10407-PA | 38..222 | 28..213 | 199 | 27.3 | Plus |
CG13618-PA | 252 | CG13618-PA | 33..247 | 29..245 | 189 | 24 | Plus |
CG10407-PC | 263 | CG10407-PC | 38..226 | 28..213 | 188 | 26.7 | Plus |
CG15497-PA | 260 | CG15497-PA | 26..258 | 11..248 | 170 | 24 | Plus |
CG2650-PA | 260 | CG2650-PA | 13..259 | 5..250 | 168 | 23.2 | Plus |
CG14259-PA | 289 | CG14259-PA | 16..271 | 6..250 | 162 | 20.9 | Plus |
CG1124-PA | 246 | CG1124-PA | 25..243 | 28..247 | 161 | 21 | Plus |
CG17189-PC | 271 | CG17189-PC | 4..255 | 5..250 | 154 | 21.3 | Plus |
CG17189-PB | 271 | CG17189-PB | 4..255 | 5..250 | 154 | 21.3 | Plus |
CG2016-PD | 249 | CG2016-PD | 10..246 | 10..248 | 146 | 21.2 | Plus |
CG2016-PB | 249 | CG2016-PB | 10..246 | 10..248 | 146 | 21.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17614-PA | 255 | GI17614-PA | 3..252 | 2..249 | 839 | 59.6 | Plus |
Dmoj\GI17613-PA | 255 | GI17613-PA | 3..252 | 2..249 | 704 | 49.6 | Plus |
Dmoj\GI17612-PA | 264 | GI17612-PA | 40..263 | 27..250 | 556 | 42 | Plus |
Dmoj\GI17615-PA | 281 | GI17615-PA | 54..281 | 25..250 | 351 | 31.1 | Plus |
Dmoj\GI10103-PA | 293 | GI10103-PA | 46..255 | 7..215 | 202 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26315-PA | 253 | GL26315-PA | 1..253 | 1..250 | 1098 | 79.4 | Plus |
Dper\GL26314-PA | 263 | GL26314-PA | 38..260 | 26..248 | 518 | 39.9 | Plus |
Dper\GL26316-PA | 318 | GL26316-PA | 97..316 | 31..248 | 348 | 32.3 | Plus |
Dper\GL21869-PA | 240 | GL21869-PA | 20..238 | 28..248 | 192 | 24.4 | Plus |
Dper\GL21627-PA | 246 | GL21627-PA | 6..243 | 3..247 | 188 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19250-PA | 253 | GA19250-PA | 1..253 | 1..250 | 1089 | 78.7 | Plus |
Dpse\GA19190-PA | 263 | GA19190-PA | 38..260 | 26..248 | 517 | 39.9 | Plus |
Dpse\GA14166-PA | 320 | GA14166-PA | 99..318 | 31..248 | 348 | 32.3 | Plus |
Dpse\GA12411-PA | 253 | GA12411-PA | 33..248 | 28..245 | 192 | 24.8 | Plus |
Dpse\GA10858-PA | 246 | GA10858-PA | 6..243 | 3..247 | 188 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10322-PA | 250 | GM10322-PA | 1..250 | 1..250 | 1307 | 97.6 | Plus |
Dsec\GM10311-PA | 262 | GM10311-PA | 10..259 | 8..248 | 511 | 37.2 | Plus |
Dsec\GM10333-PA | 311 | GM10333-PA | 90..311 | 31..250 | 356 | 30.6 | Plus |
Dsec\GM22927-PA | 137 | GM22927-PA | 1..136 | 115..250 | 326 | 41.9 | Plus |
Dsec\GM25738-PA | 230 | GM25738-PA | 12..205 | 31..233 | 194 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23879-PA | 250 | GD23879-PA | 1..250 | 1..250 | 1311 | 98 | Plus |
Dsim\GD23877-PA | 262 | GD23877-PA | 10..259 | 8..248 | 512 | 37.2 | Plus |
Dsim\GD23880-PA | 311 | GD23880-PA | 90..311 | 31..250 | 357 | 31.1 | Plus |
Dsim\GD19433-PA | 260 | GD19433-PA | 19..258 | 8..248 | 173 | 23.7 | Plus |
Dsim\GD19757-PA | 246 | GD19757-PA | 27..243 | 30..247 | 161 | 21.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17958-PA | 255 | GJ17958-PA | 3..251 | 2..248 | 858 | 61.4 | Plus |
Dvir\GJ17957-PA | 264 | GJ17957-PA | 40..258 | 27..245 | 520 | 39.7 | Plus |
Dvir\GJ17959-PA | 281 | GJ17959-PA | 56..279 | 27..248 | 372 | 33 | Plus |
Dvir\GJ23840-PA | 260 | GJ23840-PA | 14..255 | 8..248 | 203 | 25.6 | Plus |
Dvir\GJ23820-PA | 254 | GJ23820-PA | 33..252 | 27..248 | 181 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14552-PA | 254 | GK14552-PA | 1..254 | 1..250 | 897 | 67.3 | Plus |
Dwil\GK14551-PA | 265 | GK14551-PA | 40..262 | 26..248 | 517 | 41.3 | Plus |
Dwil\GK14554-PA | 317 | GK14554-PA | 96..315 | 31..248 | 354 | 32.7 | Plus |
Dwil\GK14019-PA | 258 | GK14019-PA | 37..253 | 31..248 | 190 | 24.7 | Plus |
Dwil\GK11044-PA | 258 | GK11044-PA | 25..256 | 24..250 | 174 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18633-PA | 250 | GE18633-PA | 1..250 | 1..250 | 1172 | 90.8 | Plus |
Dyak\GE18631-PA | 262 | GE18631-PA | 5..259 | 5..248 | 502 | 34.9 | Plus |
Dyak\GE18634-PA | 311 | GE18634-PA | 90..309 | 31..248 | 360 | 31.8 | Plus |
Dyak\GE26341-PA | 259 | GE26341-PA | 41..234 | 31..233 | 188 | 26.1 | Plus |
Dyak\GE23494-PA | 251 | GE23494-PA | 6..249 | 7..248 | 178 | 24 | Plus |