Clone GH20776 Report

Search the DGRC for GH20776

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:207
Well:76
Vector:pOT2
Associated Gene/TranscriptRho1-RA
Protein status:GH20776.pep: gold
Preliminary Size:1342
Sequenced Size:1173

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8416 2002-06-07 Blastp of sequenced clone
Rho1 2008-04-29 Release 5.5 accounting
Rho1 2008-08-15 Release 5.9 accounting
Rho1 2008-12-18 5.12 accounting

Clone Sequence Records

GH20776.complete Sequence

1173 bp (1173 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119536

> GH20776.complete
ATAAAACAGAACGGCTGACTCGGATTCGGAATCGAAAATTGTATTCGGAT
TCAGAATCGGACTCGGAATCCTCGGGCATCCGCTGCACTTGCATTGCATC
TAGCTACAGTTTGATTTTGCCTTTTGCAGAACTTCCAATGACGACGATTC
GCAAGAAATTGGTAATTGTCGGCGACGGTGCCTGCGGTAAAACTTGCCTT
CTGATTGTCTTCAGCAAAGATCAGTTCCCCGAGGTCTATGTGCCCACCGT
ATTCGAGAATTATGTGGCCGACATCGAGGTGGATGGCAAACAGGTGGAGC
TGGCCTTGTGGGATACGGCCGGGCAGGAGGACTACGACAGACTACGACCG
CTGAGCTATCCCGACACTGACGTCATACTGATGTGTTTCTCAGTGGATTC
ACCCGATTCGCTAGAAAATATTCCTGAAAAATGGACCCCAGAGGTCAAAC
ACTTTTGTCCAAATGTTCCAATCATTTTGGTAGGAAATAAGAAAGATTTG
CGAAATGATCCCAACACAATTCGGGATCTAGCAAAAATGAAGCAGGAGCC
GGTGAAGCCGCAGGAGGGTCGCGCCATGGCCGAGAAGATTAATGCCTTTG
CCTATTTGGAGTGTTCGGCTAAGTCCAAGGAGGGTGTGCGAGATGTTTTC
GAGACGGCAACTAGGGCCGCGCTGCAAGTCAAAAAGAGGAAGAAGACCAG
ATGCCTTTTGCTCTAAAAGAGCAAATCAACAACATGAAAATCTTTACCAC
ACACACACACAGCAAAAACAACAGCATAAACACACACAAACACACATACA
CACCTTTTACAACAATAACGAGCTGAACAACAACCACTCAACAACAACAT
CAAGAACAACCAGAACATCGGATACACGAAGCTGCACCACCACCCAACCA
GCAACAAACATGAGCAGAAAACAGAGAGCTTGAGCTAGAAGATCAGCGGA
GGAGGGATGCAGCGAGATATAAGGGAAGGCAGCACCAAGTAGAATGTCAA
ATGCGGATTTGATTTTATATACAGTCTAGTGTAGTTATAAACCGAAGTAA
ACAACAGTAATAACTCTGGCATTATTATTTGTAAAAACTAGGGCAGAGCA
GATCAATCAGTCAGCCACTGCAAGCAAAAAATATATATCGATATATGTAA
ACATAAAAAAAAAAAAAAAAAAA

GH20776.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1.f 2063 Rho1.f 125..1279 1..1155 5775 100 Plus
Rho1.e 1802 Rho1.e 125..1279 1..1155 5775 100 Plus
Rho1-RD 1272 Rho1-RD 125..1272 1..1148 5740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11993213..11993849 524..1154 2925 98.3 Plus
chr2R 21145070 chr2R 11990828..11991122 1..295 1475 100 Plus
chr2R 21145070 chr2R 11992377..11992531 291..445 775 100 Plus
chr2R 21145070 chr2R 11993069..11993152 442..525 420 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106490 524..1155 3160 100 Plus
2R 25286936 2R 16103482..16103776 1..295 1475 100 Plus
2R 25286936 2R 16105030..16105184 291..445 775 100 Plus
2R 25286936 2R 16105715..16105798 442..525 420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16107058..16107689 524..1155 3160 100 Plus
2R 25260384 2R 16104681..16104975 1..295 1475 100 Plus
2R 25260384 2R 16106229..16106383 291..445 775 100 Plus
2R 25260384 2R 16106914..16106997 442..525 420 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:31:53 has no hits.

GH20776.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:32:35 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11990828..11991120 1..293 100 -> Plus
chr2R 11992380..11992529 294..443 100 -> Plus
chr2R 11993071..11993151 444..524 100 -> Plus
chr2R 11993214..11993442 525..753 100 == Plus
chr2R 11993565..11993849 868..1154 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:40 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 1..579 138..716 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:21 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 1..579 138..716 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:52:00 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 1..579 138..716 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:47 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 1..579 138..716 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:55 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 1..579 138..716 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:57:16 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 90..1243 1..1154 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:21 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 90..1243 1..1154 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:52:00 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 90..1243 1..1154 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:47 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 90..1243 1..1154 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:55 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 17..1170 1..1154 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:35 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16105033..16105182 294..443 100 -> Plus
2R 16105717..16105797 444..524 100 -> Plus
2R 16103482..16103774 1..293 100 -> Plus
2R 16105860..16106489 525..1154 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:35 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16105033..16105182 294..443 100 -> Plus
2R 16105717..16105797 444..524 100 -> Plus
2R 16103482..16103774 1..293 100 -> Plus
2R 16105860..16106489 525..1154 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:35 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16105033..16105182 294..443 100 -> Plus
2R 16105717..16105797 444..524 100 -> Plus
2R 16103482..16103774 1..293 100 -> Plus
2R 16105860..16106489 525..1154 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:52:00 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11992538..11992687 294..443 100 -> Plus
arm_2R 11993222..11993302 444..524 100 -> Plus
arm_2R 11990987..11991279 1..293 100 -> Plus
arm_2R 11993365..11993994 525..1154 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:15 Download gff for GH20776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16104681..16104973 1..293 100 -> Plus
2R 16106232..16106381 294..443 100 -> Plus
2R 16106916..16106996 444..524 100 -> Plus
2R 16107059..16107688 525..1154 100   Plus

GH20776.hyp Sequence

Translation from 2 to 715

> GH20776.hyp
KTERLTRIRNRKLYSDSESDSESSGIRCTCIASSYSLILPFAELPMTTIR
KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVEL
ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKH
FCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFA
YLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLL*

GH20776.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-PA 192 CG8416-PA 1..192 46..237 1005 100 Plus
Rho1-PG 192 CG8416-PG 1..192 46..237 1005 100 Plus
Rho1-PF 192 CG8416-PF 1..192 46..237 1005 100 Plus
Rho1-PD 192 CG8416-PD 1..192 46..237 1005 100 Plus
Rho1-PC 192 CG8416-PC 1..192 46..237 1005 100 Plus

GH20776.pep Sequence

Translation from 137 to 715

> GH20776.pep
MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG
KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEK
INAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLL*

GH20776.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11290-PA 192 GF11290-PA 1..192 1..192 1017 100 Plus
Dana\GF16294-PA 195 GF16294-PA 1..195 1..192 575 55.9 Plus
Dana\GF10067-PA 192 GF10067-PA 5..192 7..192 564 55.9 Plus
Dana\GF23788-PA 192 GF23788-PA 5..192 7..192 559 55.9 Plus
Dana\GF20423-PA 191 GF20423-PA 1..191 1..192 537 52.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20566-PA 192 GG20566-PA 1..192 1..192 1017 100 Plus
Dere\GG11563-PA 195 GG11563-PA 1..195 1..192 576 55.9 Plus
Dere\GG14611-PA 192 GG14611-PA 5..192 7..192 563 55.9 Plus
Dere\GG14963-PA 192 GG14963-PA 5..192 7..192 561 56.4 Plus
Dere\GG19248-PA 191 GG19248-PA 1..187 1..185 534 52.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22067-PA 192 GH22067-PA 1..192 1..192 1002 98.4 Plus
Dgri\GH19274-PA 195 GH19274-PA 1..195 1..192 583 55.9 Plus
Dgri\GH16006-PA 192 GH16006-PA 5..192 7..192 563 55.9 Plus
Dgri\GH21848-PA 147 GH21848-PA 1..129 1..129 558 79.1 Plus
Dgri\GH16613-PA 192 GH16613-PA 5..192 7..192 550 56.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-PA 192 CG8416-PA 1..192 1..192 1005 100 Plus
Rho1-PG 192 CG8416-PG 1..192 1..192 1005 100 Plus
Rho1-PF 192 CG8416-PF 1..192 1..192 1005 100 Plus
Rho1-PD 192 CG8416-PD 1..192 1..192 1005 100 Plus
Rho1-PC 192 CG8416-PC 1..192 1..192 1005 100 Plus
Rho1-PB 192 CG8416-PB 1..192 1..192 1005 100 Plus
Mtl-PC 195 CG5588-PC 8..195 7..192 567 56.4 Plus
Mtl-PA 195 CG5588-PA 8..195 7..192 567 56.4 Plus
Mtl-PB 195 CG5588-PB 8..195 7..192 567 56.4 Plus
Rac1-PB 192 CG2248-PB 5..192 7..192 555 55.9 Plus
Rac1-PA 192 CG2248-PA 5..192 7..192 555 55.9 Plus
Rac2-PB 192 CG8556-PB 5..192 7..192 551 56.4 Plus
Rac2-PA 192 CG8556-PA 5..192 7..192 551 56.4 Plus
Cdc42-PD 191 CG12530-PD 5..191 7..192 529 51.9 Plus
Cdc42-PC 191 CG12530-PC 5..191 7..192 529 51.9 Plus
Cdc42-PA 191 CG12530-PA 5..191 7..192 529 51.9 Plus
RhoL-PA 190 CG9366-PA 13..181 7..187 480 50.3 Plus
RhoL-PB 214 CG9366-PB 37..205 7..187 480 50.3 Plus
RhoU-PC 582 CG34104-PC 394..558 7..174 315 40.5 Plus
RhoU-PB 582 CG34104-PB 394..558 7..174 315 40.5 Plus
RhoBTB-PC 738 CG5701-PC 15..218 7..186 304 39.6 Plus
RhoBTB-PA 745 CG5701-PA 15..218 7..186 304 39.6 Plus
RhoBTB-PB 783 CG5701-PB 15..218 7..186 304 39.6 Plus
RabX2-PA 195 CG2885-PA 9..163 7..173 225 33.1 Plus
Rab1-PA 205 CG3320-PA 13..175 7..184 225 32.1 Plus
Rab21-PC 222 CG17515-PC 11..177 3..180 225 31.3 Plus
Rab21-PD 222 CG17515-PD 11..177 3..180 225 31.3 Plus
Rab35-PB 201 CG9575-PB 10..174 7..184 224 31.3 Plus
Rab35-PD 201 CG9575-PD 10..174 7..184 224 31.3 Plus
Rab35-PA 201 CG9575-PA 10..174 7..184 224 31.3 Plus
Rap1-PC 184 CG1956-PC 5..184 7..192 215 30.9 Plus
Rap1-PB 184 CG1956-PB 5..184 7..192 215 30.9 Plus
Rap1-PA 184 CG1956-PA 5..184 7..192 215 30.9 Plus
Ras85D-PA 189 CG9375-PA 5..173 7..188 213 32.6 Plus
Rala-PB 197 CG2849-PB 13..181 7..187 212 33.3 Plus
Rab19-PB 219 CG7062-PP3-RB 23..177 7..171 211 33.3 Plus
Rab19-PA 219 CG7062-PA 23..177 7..171 211 33.3 Plus
Rab9Fb-PA 214 CG32670-PA 9..161 7..171 208 34.1 Plus
Rala-PC 201 CG2849-PC 13..176 7..185 203 33.1 Plus
Rala-PA 201 CG2849-PA 13..176 7..185 203 33.1 Plus
Rab5-PI 219 CG3664-PI 31..183 7..171 203 33.5 Plus
Rab5-PH 219 CG3664-PH 31..183 7..171 203 33.5 Plus
Rab5-PG 219 CG3664-PG 31..183 7..171 203 33.5 Plus
Rab5-PE 219 CG3664-PE 31..183 7..171 203 33.5 Plus
Rab5-PC 219 CG3664-PC 31..183 7..171 203 33.5 Plus
Rab5-PD 219 CG3664-PD 31..183 7..171 203 33.5 Plus
Rab5-PF 219 CG3664-PF 31..183 7..171 203 33.5 Plus
Rab5-PB 219 CG3664-PB 31..183 7..171 203 33.5 Plus
Rab5-PA 219 CG3664-PA 31..183 7..171 203 33.5 Plus
Rab10-PA 204 CG17060-PA 11..171 7..179 202 29.1 Plus
Rab11-PA 214 CG5771-PA 13..182 7..188 200 29.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19151-PA 192 GI19151-PA 1..192 1..192 1002 98.4 Plus
Dmoj\GI19090-PA 200 GI19090-PA 1..188 1..186 796 78.7 Plus
Dmoj\GI22015-PA 195 GI22015-PA 1..195 1..192 583 55.9 Plus
Dmoj\GI12273-PA 192 GI12273-PA 5..192 7..192 563 55.9 Plus
Dmoj\GI12458-PA 192 GI12458-PA 5..192 7..192 562 55.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20555-PA 192 GL20555-PA 1..192 1..192 1013 99.5 Plus
Dper\GL13704-PA 195 GL13704-PA 1..195 1..192 582 55.9 Plus
Dper\GL24253-PA 192 GL24253-PA 5..192 7..192 554 55.9 Plus
Dper\GL18265-PA 191 GL18265-PA 1..187 1..185 534 52.9 Plus
Dper\GL22229-PA 190 GL22229-PA 13..190 7..192 489 50.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25121-PA 192 GA25121-PA 1..192 1..192 1013 99.5 Plus
Dpse\GA18989-PA 195 GA18989-PA 1..195 1..192 582 55.9 Plus
Dpse\GA15321-PA 192 GA15321-PA 5..192 7..192 563 55.9 Plus
Dpse\GA23612-PA 192 GA23612-PA 5..192 7..192 554 55.9 Plus
Dpse\GA11680-PA 191 GA11680-PA 1..187 1..185 534 52.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21657-PA 192 GM21657-PA 1..192 1..192 1017 100 Plus
Dsec\GM16346-PA 195 GM16346-PA 1..195 1..192 577 55.9 Plus
Dsec\GM11478-PA 195 GM11478-PA 1..195 1..192 577 55.9 Plus
Dsec\GM14225-PA 192 GM14225-PA 5..192 7..192 563 55.9 Plus
Dsec\GM13759-PA 192 GM13759-PA 5..192 7..192 561 56.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11158-PA 192 GD11158-PA 1..192 1..192 1017 100 Plus
Dsim\GD13487-PA 192 GD13487-PA 5..192 7..192 563 55.9 Plus
Dsim\GD13056-PA 192 GD13056-PA 5..192 7..192 561 56.4 Plus
Dsim\GD17456-PA 191 GD17456-PA 1..187 1..185 534 52.9 Plus
Dsim\GD21343-PA 184 GD21343-PA 1..168 1..167 530 58.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22286-PA 192 GJ22286-PA 1..192 1..192 1002 98.4 Plus
Dvir\GJ20064-PA 183 GJ20064-PA 1..178 1..192 709 71 Plus
Dvir\GJ10465-PA 195 GJ10465-PA 1..195 1..192 584 55.9 Plus
Dvir\GJ13209-PA 192 GJ13209-PA 5..192 7..192 563 55.9 Plus
Dvir\GJ12360-PA 192 GJ12360-PA 5..192 7..192 562 55.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23137-PA 192 GK23137-PA 1..192 1..192 1017 100 Plus
Dwil\GK11760-PA 195 GK11760-PA 8..195 7..192 581 56.4 Plus
Dwil\GK20502-PA 192 GK20502-PA 5..192 7..192 563 55.9 Plus
Dwil\GK16805-PA 192 GK16805-PA 5..177 7..179 557 59 Plus
Dwil\GK17312-PA 191 GK17312-PA 1..191 1..192 538 52.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11751-PA 192 GE11751-PA 1..192 1..192 1017 100 Plus
Dyak\GE23748-PA 195 GE23748-PA 1..195 1..192 576 55.9 Plus
Dyak\GE20972-PA 192 GE20972-PA 5..192 7..192 563 55.9 Plus
Dyak\GE20412-PA 192 GE20412-PA 5..192 7..192 561 56.4 Plus
Dyak\GE15867-PA 191 GE15867-PA 1..187 1..185 534 52.9 Plus