Clone GH20785 Report

Search the DGRC for GH20785

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:207
Well:85
Vector:pOT2
Associated Gene/Transcriptimd-RA
Protein status:GH20785.pep: gold
Preliminary Size:1409
Sequenced Size:1289

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5576 2001-01-01 Release 2 assignment
CG5576 2001-07-04 Blastp of sequenced clone
CG5576 2003-01-01 Sim4 clustering to Release 3
imd 2008-04-29 Release 5.5 accounting
imd 2008-08-15 Release 5.9 accounting
imd 2008-12-18 5.12 accounting

Clone Sequence Records

GH20785.complete Sequence

1289 bp (1289 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051558

> GH20785.complete
CAAAAAACTCCCCAATCTGTGGAATTTCCGGAAGCGAGAGCACATTCAAA
GCTACCAGTTATCAGCGAGCAGCATGTCAAAGCTCAGGAACCTGTTGCCC
ACAATCTTTGGCGGGAAGGAGGCACAGAATCCGACACCCGTCGAGGGACG
CCTGGAAAAGGACGCAGCTCCCGTGGACGACAACGAACCAGATAACAACA
ACAGCGGAGCCCTGGCGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCC
TCGGATCTGACCGAATCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAA
TTCAATGGATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACG
TCCAGACAAACAACACCATGAACGTACACAGCGCCCAGCAACAGGTGGTC
ATGAACTTCTCGAATGCCAATAATCTGCACTTCGGCTCCGTCTACAACTT
CAACCAAAACTTGAGCGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCG
CAGAGGAGTCGGTCGCCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACG
CGCAAAACGGTCAGCATTGTGGCCATGATGCAGTCACAAGAGGAACCGGA
TGTGCGCCTGCTCGATGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGC
AGGTGATGCGGGATCTTGGCATGTCGGAAGGACAGATCGACCAGGCCATA
ATCGATCACCAAATGCATGGCAATATTAGAGAGGTGATATACCAGCTGTT
GCTCCAGTGGATTCGAAGCTCGGCGGACGGTGTGGCCACCGTTGGACGAC
TTACTACACTGCTGTGGGAGTCCCAGCATCGCGACTGCGTGCAGCGCATG
AAACTGGTTTGGAAGGCACTGGAGAAGCGCAAGACAAACAGCTAGTCAGT
GAGTGAAACTTGCTAGCAAAGATTCCAGAACGAAAACGATGCATTCAAAG
TGGCCCCTTGATGTCCAAGCCAGCCGGATGGTGAAAACTGGAAATGTTTA
ACCCACCAACTTTTGCTAAATTCAGAGCGGCCTTTGACAGAAGACATCGA
GTGGTAGAGAGAAGAGACGAACACGGGATATATGTGCAATATTTGATTTA
TAAATCCAACCTATCGAATAAGTGCGTAGAATTGCATTAACTGTTATTAC
TGCAGTTTAATCTTTAAGTTGTGATACTTGTGTCGAAAAAAAAAACCAGC
TAATTGAGCTGGTATTTAAAAGCATTTTTGTAAAGTTTATACAAATAGAA
GCTTTATTGTTACGTAATCAGAAAAAAAAAAAAAAAAAA

GH20785.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
imd-RA 1496 imd-RA 221..1493 1..1273 6365 100 Plus
GstE9-RA 825 GstE9-RA 784..825 1273..1232 210 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14297771..14298505 735..1 3660 99.9 Minus
chr2R 21145070 chr2R 14296817..14297355 1271..732 2620 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18410749..18411483 735..1 3675 100 Minus
2R 25286936 2R 18409794..18410335 1273..732 2710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18411948..18412682 735..1 3675 100 Minus
2R 25260384 2R 18410993..18411534 1273..732 2710 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:25:10 has no hits.

GH20785.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:26:04 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14296817..14297353 734..1271 99 <- Minus
chr2R 14297773..14298505 1..733 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:41 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 1..822 74..895 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:25:02 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 1..822 74..895 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:39:31 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 1..822 74..895 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:59 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 1..822 74..895 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:59 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 1..822 74..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:21 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 221..1491 1..1271 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:25:02 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 37..1307 1..1271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:31 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 50..1320 1..1271 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:59 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 221..1491 1..1271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:59 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
imd-RA 50..1320 1..1271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:26:04 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18409796..18410333 734..1271 100 <- Minus
2R 18410751..18411483 1..733 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:26:04 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18409796..18410333 734..1271 100 <- Minus
2R 18410751..18411483 1..733 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:26:04 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18409796..18410333 734..1271 100 <- Minus
2R 18410751..18411483 1..733 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:31 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14297301..14297838 734..1271 100 <- Minus
arm_2R 14298256..14298988 1..733 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:47 Download gff for GH20785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18410995..18411532 734..1271 100 <- Minus
2R 18411950..18412682 1..733 100   Minus

GH20785.hyp Sequence

Translation from 0 to 894

> GH20785.hyp
KKLPNLWNFRKREHIQSYQLSASSMSKLRNLLPTIFGGKEAQNPTPVEGR
LEKDAAPVDDNEPDNNNSGALALPSTAGTPTASSDLTESVLRELSDPNYN
SMDVVHSANIPGTLSNVQTNNTMNVHSAQQQVVMNFSNANNLHFGSVYNF
NQNLSACSSRKGSTSTAEESVASPDGKPRASATRKTVSIVAMMQSQEEPD
VRLLDVVSTHLGEGWKQVMRDLGMSEGQIDQAIIDHQMHGNIREVIYQLL
LQWIRSSADGVATVGRLTTLLWESQHRDCVQRMKLVWKALEKRKTNS*

GH20785.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
imd-PB 273 CG5576-PB 1..273 25..297 1401 100 Plus
imd-PA 273 CG5576-PA 1..273 25..297 1401 100 Plus

GH20785.pep Sequence

Translation from 73 to 894

> GH20785.pep
MSKLRNLLPTIFGGKEAQNPTPVEGRLEKDAAPVDDNEPDNNNSGALALP
STAGTPTASSDLTESVLRELSDPNYNSMDVVHSANIPGTLSNVQTNNTMN
VHSAQQQVVMNFSNANNLHFGSVYNFNQNLSACSSRKGSTSTAEESVASP
DGKPRASATRKTVSIVAMMQSQEEPDVRLLDVVSTHLGEGWKQVMRDLGM
SEGQIDQAIIDHQMHGNIREVIYQLLLQWIRSSADGVATVGRLTTLLWES
QHRDCVQRMKLVWKALEKRKTNS*

GH20785.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12765-PA 269 GF12765-PA 1..269 1..273 1161 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20972-PA 273 GG20972-PA 1..273 1..273 1346 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20217-PA 279 GH20217-PA 1..279 1..273 979 72.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
imd-PB 273 CG5576-PB 1..273 1..273 1401 100 Plus
imd-PA 273 CG5576-PA 1..273 1..273 1401 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19387-PA 281 GI19387-PA 1..281 1..273 1051 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16703-PA 274 GL16703-PA 1..274 1..273 1121 81.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18981-PA 274 GA18981-PA 1..274 1..273 1125 82.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19907-PA 273 GM19907-PA 1..272 1..272 1399 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\imd-PA 273 GD25393-PA 1..273 1..273 1425 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22449-PA 283 GJ22449-PA 1..283 1..273 1002 71.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23231-PA 287 GK23231-PA 1..287 1..273 1025 69.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\imd-PA 273 GE13913-PA 1..273 1..273 1371 93.8 Plus