BDGP Sequence Production Resources |
Search the DGRC for GH20785
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 207 |
Well: | 85 |
Vector: | pOT2 |
Associated Gene/Transcript | imd-RA |
Protein status: | GH20785.pep: gold |
Preliminary Size: | 1409 |
Sequenced Size: | 1289 |
Gene | Date | Evidence |
---|---|---|
CG5576 | 2001-01-01 | Release 2 assignment |
CG5576 | 2001-07-04 | Blastp of sequenced clone |
CG5576 | 2003-01-01 | Sim4 clustering to Release 3 |
imd | 2008-04-29 | Release 5.5 accounting |
imd | 2008-08-15 | Release 5.9 accounting |
imd | 2008-12-18 | 5.12 accounting |
1289 bp (1289 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051558
> GH20785.complete CAAAAAACTCCCCAATCTGTGGAATTTCCGGAAGCGAGAGCACATTCAAA GCTACCAGTTATCAGCGAGCAGCATGTCAAAGCTCAGGAACCTGTTGCCC ACAATCTTTGGCGGGAAGGAGGCACAGAATCCGACACCCGTCGAGGGACG CCTGGAAAAGGACGCAGCTCCCGTGGACGACAACGAACCAGATAACAACA ACAGCGGAGCCCTGGCGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCC TCGGATCTGACCGAATCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAA TTCAATGGATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACG TCCAGACAAACAACACCATGAACGTACACAGCGCCCAGCAACAGGTGGTC ATGAACTTCTCGAATGCCAATAATCTGCACTTCGGCTCCGTCTACAACTT CAACCAAAACTTGAGCGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCG CAGAGGAGTCGGTCGCCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACG CGCAAAACGGTCAGCATTGTGGCCATGATGCAGTCACAAGAGGAACCGGA TGTGCGCCTGCTCGATGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGC AGGTGATGCGGGATCTTGGCATGTCGGAAGGACAGATCGACCAGGCCATA ATCGATCACCAAATGCATGGCAATATTAGAGAGGTGATATACCAGCTGTT GCTCCAGTGGATTCGAAGCTCGGCGGACGGTGTGGCCACCGTTGGACGAC TTACTACACTGCTGTGGGAGTCCCAGCATCGCGACTGCGTGCAGCGCATG AAACTGGTTTGGAAGGCACTGGAGAAGCGCAAGACAAACAGCTAGTCAGT GAGTGAAACTTGCTAGCAAAGATTCCAGAACGAAAACGATGCATTCAAAG TGGCCCCTTGATGTCCAAGCCAGCCGGATGGTGAAAACTGGAAATGTTTA ACCCACCAACTTTTGCTAAATTCAGAGCGGCCTTTGACAGAAGACATCGA GTGGTAGAGAGAAGAGACGAACACGGGATATATGTGCAATATTTGATTTA TAAATCCAACCTATCGAATAAGTGCGTAGAATTGCATTAACTGTTATTAC TGCAGTTTAATCTTTAAGTTGTGATACTTGTGTCGAAAAAAAAAACCAGC TAATTGAGCTGGTATTTAAAAGCATTTTTGTAAAGTTTATACAAATAGAA GCTTTATTGTTACGTAATCAGAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14296817..14297353 | 734..1271 | 99 | <- | Minus |
chr2R | 14297773..14298505 | 1..733 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 1..822 | 74..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 1..822 | 74..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 1..822 | 74..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 1..822 | 74..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 1..822 | 74..895 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 221..1491 | 1..1271 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 37..1307 | 1..1271 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 50..1320 | 1..1271 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 221..1491 | 1..1271 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
imd-RA | 50..1320 | 1..1271 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18409796..18410333 | 734..1271 | 100 | <- | Minus |
2R | 18410751..18411483 | 1..733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18409796..18410333 | 734..1271 | 100 | <- | Minus |
2R | 18410751..18411483 | 1..733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18409796..18410333 | 734..1271 | 100 | <- | Minus |
2R | 18410751..18411483 | 1..733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14297301..14297838 | 734..1271 | 100 | <- | Minus |
arm_2R | 14298256..14298988 | 1..733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18410995..18411532 | 734..1271 | 100 | <- | Minus |
2R | 18411950..18412682 | 1..733 | 100 | Minus |
Translation from 0 to 894
> GH20785.hyp KKLPNLWNFRKREHIQSYQLSASSMSKLRNLLPTIFGGKEAQNPTPVEGR LEKDAAPVDDNEPDNNNSGALALPSTAGTPTASSDLTESVLRELSDPNYN SMDVVHSANIPGTLSNVQTNNTMNVHSAQQQVVMNFSNANNLHFGSVYNF NQNLSACSSRKGSTSTAEESVASPDGKPRASATRKTVSIVAMMQSQEEPD VRLLDVVSTHLGEGWKQVMRDLGMSEGQIDQAIIDHQMHGNIREVIYQLL LQWIRSSADGVATVGRLTTLLWESQHRDCVQRMKLVWKALEKRKTNS*
Translation from 73 to 894
> GH20785.pep MSKLRNLLPTIFGGKEAQNPTPVEGRLEKDAAPVDDNEPDNNNSGALALP STAGTPTASSDLTESVLRELSDPNYNSMDVVHSANIPGTLSNVQTNNTMN VHSAQQQVVMNFSNANNLHFGSVYNFNQNLSACSSRKGSTSTAEESVASP DGKPRASATRKTVSIVAMMQSQEEPDVRLLDVVSTHLGEGWKQVMRDLGM SEGQIDQAIIDHQMHGNIREVIYQLLLQWIRSSADGVATVGRLTTLLWES QHRDCVQRMKLVWKALEKRKTNS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12765-PA | 269 | GF12765-PA | 1..269 | 1..273 | 1161 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20972-PA | 273 | GG20972-PA | 1..273 | 1..273 | 1346 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20217-PA | 279 | GH20217-PA | 1..279 | 1..273 | 979 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
imd-PB | 273 | CG5576-PB | 1..273 | 1..273 | 1401 | 100 | Plus |
imd-PA | 273 | CG5576-PA | 1..273 | 1..273 | 1401 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19387-PA | 281 | GI19387-PA | 1..281 | 1..273 | 1051 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16703-PA | 274 | GL16703-PA | 1..274 | 1..273 | 1121 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18981-PA | 274 | GA18981-PA | 1..274 | 1..273 | 1125 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19907-PA | 273 | GM19907-PA | 1..272 | 1..272 | 1399 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\imd-PA | 273 | GD25393-PA | 1..273 | 1..273 | 1425 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22449-PA | 283 | GJ22449-PA | 1..283 | 1..273 | 1002 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23231-PA | 287 | GK23231-PA | 1..287 | 1..273 | 1025 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\imd-PA | 273 | GE13913-PA | 1..273 | 1..273 | 1371 | 93.8 | Plus |