Clone GH20802 Report

Search the DGRC for GH20802

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:208
Well:2
Vector:pOT2
Associated Gene/TranscriptCG2233-RA
Protein status:GH20802.pep: gold
Preliminary Size:1529
Sequenced Size:1484

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2233 2001-01-01 Release 2 assignment
CG2233 2001-09-19 Blastp of sequenced clone
CG2233 2003-01-01 Sim4 clustering to Release 3
CG2233 2008-04-29 Release 5.5 accounting
CG2233 2008-08-15 Release 5.9 accounting
CG2233 2008-12-18 5.12 accounting

Clone Sequence Records

GH20802.complete Sequence

1484 bp (1484 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058429

> GH20802.complete
TTTGAATTCGTCGCGATGTTTTCGATTAACGCCGTGATCCTGGGCATTTT
GGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGCA
TCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTTA
TTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTGA
CCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAACA
ACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGAC
CCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTGT
TCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTGC
CAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCATT
GGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAATT
GAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCAG
AGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAGT
TACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGTA
CTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGCA
GTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGAC
TTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGCA
TTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGTT
TGGGTGTTTCCGGAACCGTGAAGCTGCCGACGTTCGCCGGGCAATCATGC
AACGGAAGCCGATCGCTCAACATTGAACTGATTGGTGGCAAATTCCTGCC
CATTCCCGCCCACATTTGGGCCCATGTTCACGCTGTGGAAAAGTCCGGTA
CCGGACAGGATGAGTTCGTCATCATTGGACACAACTCGCCCTTCTATCGC
AGTGACTTAAGCAATCTGTGCCCCTCGATGTGCAACCAAGTGTCCTGGCT
GAGGAACACCCTCTTCTCCAGACTCCACGAGTTTCCCGCCTTTGGAATGG
TGCAGTGCTGCCGTGTGGAGGATGTGGCCCACAAACTGGACAATTTTCCC
GGTCCCTTTGAGAATGAAAATATGAATGTCAGCAGGACAACCGAGGCTAC
CACAATATAAACAGTTCCCTTTATATTATCCCTCTGTTCCAACAAATATG
GGACTCTTTGTGTACATGCAATTTGTATAAAGCGCCTTTTAATGCATTAA
AATGCATTTAATGCAATAATACTTGTCTATATAATCAGCCCGTATTGCTT
TGTATCCGTATACGATCCTTAATTCCAGTAATAAAGTCACAATTTGCGCA
TATTTGAATCTTTAAAAAAAAAAAAAAAAAAAAA

GH20802.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233.f 3780 CG2233.f 14..1479 1..1466 7330 100 Plus
CG2233-RA 1644 CG2233-RA 107..1572 1..1466 7330 100 Plus
CG2233.e 1565 CG2233.e 302..1528 240..1466 6135 100 Plus
CG2233.e 1565 CG2233.e 14..252 1..239 1195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7927588..7928006 1463..1045 2095 100 Minus
chrX 22417052 chrX 7928067..7928484 1044..627 2060 99.5 Minus
chrX 22417052 chrX 7928748..7929060 552..240 1565 100 Minus
chrX 22417052 chrX 7929110..7929348 239..1 1195 100 Minus
chrX 22417052 chrX 7928573..7928651 629..551 395 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8035738..8036159 1466..1045 2110 100 Minus
X 23542271 X 8036220..8036637 1044..627 2090 100 Minus
X 23542271 X 8036900..8037212 552..240 1565 100 Minus
X 23542271 X 8037262..8037500 239..1 1195 100 Minus
X 23542271 X 8036726..8036804 629..551 395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8043836..8044257 1466..1045 2110 100 Minus
X 23527363 X 8044318..8044735 1044..627 2090 100 Minus
X 23527363 X 8044998..8045310 552..240 1565 100 Minus
X 23527363 X 8045360..8045598 239..1 1195 100 Minus
X 23527363 X 8044824..8044902 629..551 395 100 Minus
Blast to na_te.dros performed 2019-03-16 23:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 4341..4491 1407..1256 127 55.6 Minus

GH20802.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:27:02 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7927588..7928006 1045..1463 100 <- Minus
chrX 7928067..7928481 630..1044 99 <- Minus
chrX 7928573..7928649 553..629 100 <- Minus
chrX 7928748..7929060 240..552 100 <- Minus
chrX 7929110..7929348 1..239 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:42 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1245 16..1260 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:06 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1245 16..1260 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:15 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1245 16..1260 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:49 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1245 16..1260 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:01 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1245 16..1260 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:44 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:06 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:15 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 18..1480 1..1463 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:03 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1463 1..1463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:01 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 18..1480 1..1463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:27:02 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
X 8035741..8036159 1045..1463 100 <- Minus
X 8036220..8036634 630..1044 100 <- Minus
X 8036726..8036802 553..629 100 <- Minus
X 8036900..8037212 240..552 100 <- Minus
X 8037262..8037500 1..239 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:27:02 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
X 8035741..8036159 1045..1463 100 <- Minus
X 8036220..8036634 630..1044 100 <- Minus
X 8036726..8036802 553..629 100 <- Minus
X 8036900..8037212 240..552 100 <- Minus
X 8037262..8037500 1..239 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:27:02 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
X 8035741..8036159 1045..1463 100 <- Minus
X 8036220..8036634 630..1044 100 <- Minus
X 8036726..8036802 553..629 100 <- Minus
X 8036900..8037212 240..552 100 <- Minus
X 8037262..8037500 1..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:15 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7929774..7930192 1045..1463 100 <- Minus
arm_X 7930253..7930667 630..1044 100 <- Minus
arm_X 7930759..7930835 553..629 100 <- Minus
arm_X 7930933..7931245 240..552 100 <- Minus
arm_X 7931295..7931533 1..239 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:59 Download gff for GH20802.complete
Subject Subject Range Query Range Percent Splice Strand
X 8043839..8044257 1045..1463 100 <- Minus
X 8044318..8044732 630..1044 100 <- Minus
X 8044824..8044900 553..629 100 <- Minus
X 8044998..8045310 240..552 100 <- Minus
X 8045360..8045598 1..239 100   Minus

GH20802.hyp Sequence

Translation from 0 to 1259

> GH20802.hyp
FEFVAMFSINAVILGILVTSVMAQDARGTCELSIGSPAPVVISNFGSQRL
LFDSVRKLERENYQTIDLFCASGFSIDYYNYYNNQISTTIKATKLTMTCD
PIHRFTYKDGIKDVISVRCLEVGPQLFESMNKLPNCTGMTLVVGRKFDGI
GLIKYSALCYDLAAFQLKYIGYTTNFNNIQIFPETQLGQLNDIGLDTPIS
YQKNLFETISKSELDAYLAKEKQLFTEDTFQVGSLVQDEMVSRHLVVYED
LLTTVWLEVLRSGNWKHWTKAMRDAIGVHFDIRLGVSGTVKLPTFAGQSC
NGSRSLNIELIGGKFLPIPAHIWAHVHAVEKSGTGQDEFVIIGHNSPFYR
SDLSNLCPSMCNQVSWLRNTLFSRLHEFPAFGMVQCCRVEDVAHKLDNFP
GPFENENMNVSRTTEATTI*

GH20802.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-PA 414 CG2233-PA 1..414 6..419 2180 100 Plus

GH20802.pep Sequence

Translation from 15 to 1259

> GH20802.pep
MFSINAVILGILVTSVMAQDARGTCELSIGSPAPVVISNFGSQRLLFDSV
RKLERENYQTIDLFCASGFSIDYYNYYNNQISTTIKATKLTMTCDPIHRF
TYKDGIKDVISVRCLEVGPQLFESMNKLPNCTGMTLVVGRKFDGIGLIKY
SALCYDLAAFQLKYIGYTTNFNNIQIFPETQLGQLNDIGLDTPISYQKNL
FETISKSELDAYLAKEKQLFTEDTFQVGSLVQDEMVSRHLVVYEDLLTTV
WLEVLRSGNWKHWTKAMRDAIGVHFDIRLGVSGTVKLPTFAGQSCNGSRS
LNIELIGGKFLPIPAHIWAHVHAVEKSGTGQDEFVIIGHNSPFYRSDLSN
LCPSMCNQVSWLRNTLFSRLHEFPAFGMVQCCRVEDVAHKLDNFPGPFEN
ENMNVSRTTEATTI*

GH20802.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20989-PA 907 GF20989-PA 535..879 66..404 789 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17590-PA 430 GG17590-PA 1..409 1..412 1354 63.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17970-PA 436 GH17970-PA 5..403 4..395 789 39.5 Plus
Dgri\GH24487-PA 426 GH24487-PA 23..402 25..395 519 31.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-PA 414 CG2233-PA 1..414 1..414 2180 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15361-PA 427 GI15361-PA 1..394 1..395 779 39.2 Plus
Dmoj\GI21626-PA 401 GI21626-PA 1..401 1..406 692 36.6 Plus
Dmoj\GI10894-PA 435 GI10894-PA 14..411 18..394 594 33.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15238-PA 367 GL15238-PA 1..367 1..413 751 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15315-PA 416 GA15315-PA 1..416 1..413 927 44.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11220-PA 260 GM11220-PA 40..242 205..407 994 88.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16135-PA 421 GD16135-PA 1..401 1..407 1668 77.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16564-PA 431 GJ16564-PA 1..402 1..399 872 43.5 Plus
Dvir\GJ16569-PA 426 GJ16569-PA 15..405 21..394 568 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16141-PA 401 GK16141-PA 7..387 11..395 696 34.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17490-PA 430 GE17490-PA 1..400 1..398 1331 64.8 Plus