Clone GH20817 Report

Search the DGRC for GH20817

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:208
Well:17
Vector:pOT2
Associated Gene/TranscriptCG1648-RA
Protein status:GH20817.pep: gold
Preliminary Size:1135
Sequenced Size:973

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1648 2001-01-01 Release 2 assignment
CG1648 2003-01-01 Sim4 clustering to Release 3
CG1648 2003-01-16 Blastp of sequenced clone
CG1648 2008-04-29 Release 5.5 accounting
CG1648 2008-08-15 Release 5.9 accounting
CG1648 2008-12-18 5.12 accounting

Clone Sequence Records

GH20817.complete Sequence

973 bp (973 high quality bases) assembled on 2003-01-16

GenBank Submission: AY060755

> GH20817.complete
CAGTCGGACGTTTAAAAATAAACGCGCTCCACCAAAAATACCTAGCCCGC
TGGCCGCAAACGCAAATAAATCTGAACAAAAATTCGAATTCCATCCGGAT
CAAACAAACTTACAAACCCGAAAATTAGTTCTTCGACTCCAACGGCCGAG
AAAACCGCAACAGTTTCAAAATGTTCAGCTCGATTTCAGCTTCCTTGAAG
AACTTCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGC
CGAGAAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGG
AGCAGGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCC
GAGCAGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGC
GGAGGCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCG
CCGGAGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAG
GCGGCGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGA
GGCCTCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGG
CCAACGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGAC
CAGAAGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGAC
CAGTCAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACC
AGAAGCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCC
CAGGAGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCT
GGGTCAGAAGTAGAGGCGTCTCCCTTCGCGGTGCCACCTAAAATATCTTG
ATGTGAAAATGCTTTAGATACAAAAACAAAAAAAATAGAAAGGAATTTGC
TTCAAAAAAAAAAAAAAAAAAAA

GH20817.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648.c 1488 CG1648.c 122..1076 1..955 4775 100 Plus
CG1648-RA 1227 CG1648-RA 122..1076 1..955 4775 100 Plus
CG1648.a 991 CG1648.a 225..990 190..955 3830 100 Plus
CG1648.a 991 CG1648.a 24..212 1..189 945 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5698862..5699443 953..372 2880 99.7 Minus
chr2R 21145070 chr2R 5699948..5700133 372..187 930 100 Minus
chr2R 21145070 chr2R 5707325..5707513 189..1 930 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9811386..9811969 955..372 2920 100 Minus
2R 25286936 2R 9819840..9820028 189..1 945 100 Minus
2R 25286936 2R 9812482..9812667 372..187 930 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9812585..9813168 955..372 2920 100 Minus
2R 25260384 2R 9821039..9821227 189..1 945 100 Minus
2R 25260384 2R 9813681..9813866 372..187 930 100 Minus
Blast to na_te.dros performed 2019-03-16 09:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2933..2997 633..697 109 63.1 Plus

GH20817.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:44:54 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5698862..5699442 373..953 99 <- Minus
chr2R 5699948..5700130 190..372 100 <- Minus
chr2R 5707325..5707513 1..189 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:44 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 1..693 171..863 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:40 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 1..693 171..863 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:17 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 1..693 171..863 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:39 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 1..693 171..863 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:46 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 1..693 171..863 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:05 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 24..976 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:40 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 24..976 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:17 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 26..978 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:40 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 24..976 1..953 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:46 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 26..978 1..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:54 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9811388..9811968 373..953 100 <- Minus
2R 9812482..9812664 190..372 100 <- Minus
2R 9819840..9820028 1..189 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:54 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9811388..9811968 373..953 100 <- Minus
2R 9812482..9812664 190..372 100 <- Minus
2R 9819840..9820028 1..189 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:54 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9811388..9811968 373..953 100 <- Minus
2R 9812482..9812664 190..372 100 <- Minus
2R 9819840..9820028 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:17 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5698893..5699473 373..953 100 <- Minus
arm_2R 5699987..5700169 190..372 100 <- Minus
arm_2R 5707345..5707533 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:47 Download gff for GH20817.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9812587..9813167 373..953 100 <- Minus
2R 9813681..9813863 190..372 100 <- Minus
2R 9821039..9821227 1..189 100   Minus

GH20817.pep Sequence

Translation from 170 to 862

> GH20817.pep
MFSSISASLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKKVG
QSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVNQG
KQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAINK
SVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQSVE
KTVQDAAGQAQESAGQQANALLGKLHLGQK*

GH20817.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11480-PA 232 GF11480-PA 1..232 1..230 943 92.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25263-PA 230 GG25263-PA 1..230 1..230 1078 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22847-PA 233 GH22847-PA 1..233 1..230 829 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-PC 230 CG1648-PC 1..230 1..230 1096 100 Plus
CG1648-PA 230 CG1648-PA 1..230 1..230 1096 100 Plus
CG1648-PB 232 CG1648-PB 10..232 8..230 1065 100 Plus
CG45076-PH 619 CG45076-PH 331..545 23..218 154 26 Plus
CG45076-PA 619 CG45076-PA 331..545 23..218 154 26 Plus
CG45076-PH 619 CG45076-PH 356..562 19..221 151 28.8 Plus
CG45076-PA 619 CG45076-PA 356..562 19..221 151 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21225-PA 233 GI21225-PA 1..233 1..230 863 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17447-PA 232 GL17447-PA 1..232 1..230 851 85.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14072-PB 230 GA14072-PB 1..230 1..230 883 87.8 Plus
Dpse\GA14072-PA 232 GA14072-PA 1..232 1..230 851 85.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20580-PA 230 GM20580-PA 1..230 1..230 1096 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10052-PA 230 GD10052-PA 1..230 1..230 1096 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20829-PA 233 GJ20829-PA 11..233 8..230 818 84.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15615-PA 230 GK15615-PA 1..229 1..227 834 83.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22072-PA 230 GE22072-PA 1..230 1..230 1090 99.6 Plus

GH20817.hyp Sequence

Translation from 170 to 862

> GH20817.hyp
MFSSISASLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKKVG
QSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVNQG
KQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAINK
SVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQSVE
KTVQDAAGQAQESAGQQANALLGKLHLGQK*

GH20817.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-PC 230 CG1648-PC 1..230 1..230 1096 100 Plus
CG1648-PA 230 CG1648-PA 1..230 1..230 1096 100 Plus
CG1648-PB 232 CG1648-PB 10..232 8..230 1065 100 Plus
CG45076-PH 619 CG45076-PH 331..545 23..218 154 26 Plus
CG45076-PA 619 CG45076-PA 331..545 23..218 154 26 Plus
CG45076-PH 619 CG45076-PH 356..562 19..221 151 28.8 Plus