Clone GH20963 Report

Search the DGRC for GH20963

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:209
Well:63
Vector:pOT2
Associated Gene/TranscriptCG6661-RA
Protein status:GH20963.pep: gold
Preliminary Size:1819
Sequenced Size:1927

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6661 2001-01-01 Release 2 assignment
CG6661 2001-09-19 Blastp of sequenced clone
CG6661 2003-01-01 Sim4 clustering to Release 3
CG6661 2008-04-29 Release 5.5 accounting
CG6661 2008-08-15 Release 5.9 accounting
CG6661 2008-12-18 5.12 accounting

Clone Sequence Records

GH20963.complete Sequence

1927 bp (1927 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058431

> GH20963.complete
ATACACTTAAGTATACGAATATTAAACTGGCAAATGTAGAATAAATTCCT
GTTAAAAGCTTCAAATTAAAATTGTCCAAGCAATGCTTAAGCTGGGACTC
GCGGTCCCCACTCGATGGTCCTTCAGATGTCGTCGCCTTGGTGGAATGGC
TATCATTAAAGGCGAGACAAAAATCTCCGTGGACAAGCAGAAAGCAGTCC
AGCCGGAACAGGATGAGGACCAACAAGAGGTCGAGCCGGATTCCCAGCCG
GCGGAAGAAAATCCAAGTATTCACAGGAACCAGAGAGTATTAGTTAATCA
TGCCATTCAGGAGATTCAGCACAGGCCGTTGGAGGTGCCCACAATTATCG
GCGATGATACAGTGTACACCATGGACACTCAGCGTGTTTGCTGCCCGCAT
CACCTGCAGACGAACTTGGCTCACGTCTACTACGCCAATCGCAAGCAAAT
CGAGGCGGCAATTAAGTCTGCTCTTTCGGCGCAAGGAACTTGGAGTCTAG
TTCCCATCGCCCAGCGACTGGCCATTTGGCGACGTGCCGCCACCATTATC
GAGGAGGACGAGCTGCGGCTGAGAGTGTTCCTCATGATGACGCTGAGCAA
AACCGCCGACGATGCGACGCGGGACATTCGGCGGCTACTCACATCGCTGA
GGGCCAATGCTGACTATTTGGAGCATCTGTCCGAGCTGCGCTTTGAGATC
CAGGGTGATATGAATGTATTCCCCAGCTTTCATTTGCGACCCATGGATGG
ATTTGTGGCCGCACTGGCACCATTTGAATCGGTGGCCTTGTCATCCAGCT
TGGCCCTCTGTCCGGCGCTCATGGGCAACACGGTGTTGTGGAATCCCTCA
TTGGAAGTGGCACCAGTGAGCTATTTAATTTTCAGAGCCTTCCAGGAGGC
GGGTTTGCCCAGCGGCGTTATCAACTTTGTGCCGGCCAACGAGCGTCTGT
TCTTGGACACCATCACGGATGCCGTGCACTTTGCCGGACTGAATACTCAA
GCGAGTGCAGCTTTTTACAGGCATGTGCACAAGCTGGTGAGCGATCGAAT
GGAGCGATACATCTGTTTTCCTCGTCTGGTGGCCGAGTGCCCGGGTCAGA
ACTTTCATTTTGTCCATGCCAGCGCTAAGGTGGAATCTGTCGTCTCAGCC
ACCGTGCAGGCGGCCTTTGGCTTTGCCGGACAGTATGCCAACTCGCTCTC
CCGGATGTATGTGCCCTCGTCAATGTGGCCACGCCTCAGGGAGGAGTTGG
TGGAGGCCACGGAGCAACTGACCATCGGAGACCCCATCGAATCGGAAACG
GATATAGGAGCGATGGTGCATATAAATGACTTCCGGCGGATGCAGAAACT
ACTGCAGCGCACCAAGAACATGGAGCAGTTGTGCGGAGGCAGCTGTGATG
ACAGCACTGGTAGATTCGTTGATCCAACGATTGTCCGGGTGTCGGATCCA
TTGGATCCACTGCTGTGTGAGCCCTGCTGCGGACCGTTCTTGCCGGTGTT
CGTCTATTCGGACGATTCCTTCAGTGAGGCTCTCAAGCTTGCCGCCAATC
AGTCCAGATACGCGCTCTCCGGCTCCATATTCGCAAGTCAGGATGAGGTT
ATCCTTCACTGCCTGAACCAACTGCGAATGTCCGCTAGTAATCTCTACGT
GAATGAGCGATGCACGGGTAGCACGTACGGGCTGACTCCCTTTGGTGGAA
ATCGGTTGTCCGGGACAAACGATAAATCCGGATCTGCCTACTTCCTAATG
CGCTGGAGCTCGCCGCTGCTCATCGAGGAGACTGTTGATGGTCCACCTCC
CATGCGTGGATCAAATACGTTTCCCTGAGCTTGCTGATGGGTGGCGGGTG
TTTCAAAATTACAATAAATGTATTTGCAGTGGCGTTTTTACTATTTAACC
ACAAACTGGAAAAAAAAAAAAAAAAAA

GH20963.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6661-RA 1976 CG6661-RA 68..1976 1..1909 9545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14024945..14026853 1..1909 9485 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
pncr014:3L-RA 2204 CR33944-RA 1..1890 1890..1 9450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14034843..14036756 1..1914 9555 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14027943..14029856 1..1914 9555 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 19:39:09 has no hits.

GH20963.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:40:15 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14024945..14026853 1..1909 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:50:54 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 1..1746 83..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:09 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 1..1746 83..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:18 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 1..1746 83..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:51 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 1..1746 83..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:43 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 1..1746 83..1828 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:01:19 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
pncr014:3L-RA 1..1890 1..1890 100   Minus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:48 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 68..1975 1..1908 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:09 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 68..1976 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:18 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 68..1976 1..1909 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:51 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 68..1975 1..1908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:43 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6661-RA 68..1976 1..1909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:15 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14034843..14036751 1..1909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:15 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14034843..14036751 1..1909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:15 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14034843..14036751 1..1909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:18 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14027943..14029851 1..1909 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:14:02 Download gff for GH20963.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14027943..14029851 1..1909 100   Plus

GH20963.pep Sequence

Translation from 82 to 1827

> GH20963.pep
MLKLGLAVPTRWSFRCRRLGGMAIIKGETKISVDKQKAVQPEQDEDQQEV
EPDSQPAEENPSIHRNQRVLVNHAIQEIQHRPLEVPTIIGDDTVYTMDTQ
RVCCPHHLQTNLAHVYYANRKQIEAAIKSALSAQGTWSLVPIAQRLAIWR
RAATIIEEDELRLRVFLMMTLSKTADDATRDIRRLLTSLRANADYLEHLS
ELRFEIQGDMNVFPSFHLRPMDGFVAALAPFESVALSSSLALCPALMGNT
VLWNPSLEVAPVSYLIFRAFQEAGLPSGVINFVPANERLFLDTITDAVHF
AGLNTQASAAFYRHVHKLVSDRMERYICFPRLVAECPGQNFHFVHASAKV
ESVVSATVQAAFGFAGQYANSLSRMYVPSSMWPRLREELVEATEQLTIGD
PIESETDIGAMVHINDFRRMQKLLQRTKNMEQLCGGSCDDSTGRFVDPTI
VRVSDPLDPLLCEPCCGPFLPVFVYSDDSFSEALKLAANQSRYALSGSIF
ASQDEVILHCLNQLRMSASNLYVNERCTGSTYGLTPFGGNRLSGTNDKSG
SAYFLMRWSSPLLIEETVDGPPPMRGSNTFP*

GH20963.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24590-PA 578 GF24590-PA 1..575 1..577 2303 73.5 Plus
Dana\GF23503-PA 571 GF23503-PA 69..565 84..578 1018 39.7 Plus
Dana\GF18051-PA 610 GF18051-PA 62..566 67..567 777 34.6 Plus
Dana\GF22728-PA 520 GF22728-PA 65..498 109..550 211 23.4 Plus
Dana\GF17265-PA 507 GF17265-PA 68..488 120..553 199 22.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15668-PA 580 GG15668-PA 1..580 1..581 2849 90.5 Plus
Dere\GG13195-PA 574 GG13195-PA 40..568 56..578 1021 39.1 Plus
Dere\GG11090-PA 619 GG11090-PA 71..569 74..567 792 34.9 Plus
Dere\GG12233-PA 509 GG12233-PA 136..490 195..553 215 24.7 Plus
Dere\GG25345-PA 520 GG25345-PA 68..498 112..550 203 22.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17138-PA 573 GH17138-PA 54..559 67..567 1003 39.7 Plus
Dgri\GH13227-PA 518 GH13227-PA 67..496 112..550 261 24.6 Plus
Dgri\GH13324-PA 521 GH13324-PA 66..499 109..550 228 24 Plus
Dgri\GH18609-PA 501 GH18609-PA 52..476 111..546 203 23.2 Plus
Dgri\GH13317-PA 913 GH13317-PA 427..896 81..550 180 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6661-PA 581 CG6661-PA 1..581 1..581 3019 100 Plus
P5CDh1-PE 574 CG7145-PE 72..560 84..567 964 39.9 Plus
P5CDh1-PF 574 CG7145-PF 72..560 84..567 964 39.9 Plus
P5CDh1-PD 574 CG7145-PD 72..560 84..567 964 39.9 Plus
P5CDh1-PB 574 CG7145-PB 72..560 84..567 964 39.9 Plus
P5CDh1-PA 574 CG7145-PA 72..560 84..567 964 39.9 Plus
P5CDh2-PG 608 CG33092-PG 58..563 67..567 789 34.8 Plus
P5CDh2-PE 609 CG33092-PE 59..564 67..567 789 34.8 Plus
P5CDh2-PD 609 CG33092-PD 59..564 67..567 789 34.8 Plus
P5CDh2-PC 614 CG33092-PC 64..569 67..567 789 34.8 Plus
P5CDh2-PB 614 CG33092-PB 64..569 67..567 789 34.8 Plus
P5CDh2-PA 614 CG33092-PA 64..569 67..567 789 34.8 Plus
Aldh-PB 520 CG3752-PB 68..498 112..550 208 22.4 Plus
Aldh-PA 520 CG3752-PA 68..498 112..550 208 22.4 Plus
Ssadh-PE 509 CG4685-PE 169..490 223..553 205 25.3 Plus
Ssadh-PD 509 CG4685-PD 169..490 223..553 205 25.3 Plus
Ssadh-PC 509 CG4685-PC 169..490 223..553 205 25.3 Plus
Ssadh-PB 509 CG4685-PB 169..490 223..553 205 25.3 Plus
Ssadh-PA 509 CG4685-PA 169..490 223..553 205 25.3 Plus
CG8665-PA 913 CG8665-PA 461..890 112..544 184 22.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11746-PA 567 GI11746-PA 48..561 67..578 1023 39.8 Plus
Dmoj\GI22191-PA 608 GI22191-PA 58..564 62..567 795 34.6 Plus
Dmoj\GI17663-PA 519 GI17663-PA 64..497 109..550 219 23.3 Plus
Dmoj\GI10356-PA 489 GI10356-PA 149..470 223..553 194 24.3 Plus
Dmoj\GI12253-PA 817 GI12253-PA 362..794 109..544 184 22.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25324-PA 574 GL25324-PA 55..568 67..578 1005 38.8 Plus
Dper\GL23801-PA 615 GL23801-PA 60..567 66..567 752 32.1 Plus
Dper\GL26145-PA 521 GL26145-PA 57..499 99..550 221 23.2 Plus
Dper\GL26144-PA 520 GL26144-PA 66..498 109..550 221 23.4 Plus
Dper\GL21675-PA 489 GL21675-PA 149..464 223..546 217 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20135-PA 574 GA20135-PA 55..568 67..578 1004 38.8 Plus
Dpse\GA17274-PA 615 GA17274-PA 60..567 66..567 751 32.3 Plus
Dpse\GA22228-PA 143 GA22228-PA 1..142 168..308 262 42.7 Plus
Dpse\GA18355-PA 505 GA18355-PA 165..478 223..544 225 25.7 Plus
Dpse\GA17661-PA 521 GA17661-PA 57..499 99..550 221 23.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25448-PA 580 GM25448-PA 1..580 1..581 2987 95.2 Plus
Dsec\GM22106-PA 574 GM22106-PA 52..568 64..578 1021 39.7 Plus
Dsec\GM26382-PA 613 GM26382-PA 64..570 67..567 799 35.2 Plus
Dsec\GM17439-PA 520 GM17439-PA 68..498 112..550 208 22.8 Plus
Dsec\GM10233-PA 509 GM10233-PA 169..490 223..553 208 25 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14474-PA 580 GD14474-PA 1..580 1..581 2978 95.2 Plus
Dsim\GD17558-PA 574 GD17558-PA 52..568 64..578 1018 39.7 Plus
Dsim\GD20905-PA 613 GD20905-PA 64..570 67..567 804 35.2 Plus
Dsim\GD18186-PA 509 GD18186-PA 169..490 223..553 211 25.3 Plus
Dsim\GD23600-PA 538 GD23600-PA 85..516 104..550 208 22.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13456-PA 569 GJ13456-PA 50..563 67..578 1003 39.3 Plus
Dvir\GJ24310-PA 604 GJ24310-PA 57..562 66..567 849 36 Plus
Dvir\GJ17859-PA 519 GJ17859-PA 64..497 109..550 220 23.5 Plus
Dvir\GJ10208-PA 501 GJ10208-PA 161..476 223..546 189 24 Plus
Dvir\GJ24150-PA 485 GJ24150-PA 58..467 128..550 180 23.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17042-PA 575 GK17042-PA 1..564 1..571 1887 59.1 Plus
Dwil\GK12188-PA 569 GK12188-PA 50..563 67..578 1005 39 Plus
Dwil\GK22325-PA 594 GK22325-PA 50..534 60..567 739 32.6 Plus
Dwil\GK24201-PA 521 GK24201-PA 66..499 109..550 242 24.2 Plus
Dwil\GK14395-PA 504 GK14395-PA 164..477 223..544 205 23.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21997-PA 580 GE21997-PA 1..580 1..581 2835 90 Plus
Dyak\GE19517-PA 573 GE19517-PA 53..567 66..578 1017 39.6 Plus
Dyak\GE10250-PA 619 GE10250-PA 64..569 67..567 805 35 Plus
Dyak\GE18837-PA 520 GE18837-PA 68..498 112..550 210 22.6 Plus
Dyak\GE10681-PA 509 GE10681-PA 169..490 223..553 208 24.4 Plus

GH20963.hyp Sequence

Translation from 82 to 1827

> GH20963.hyp
MLKLGLAVPTRWSFRCRRLGGMAIIKGETKISVDKQKAVQPEQDEDQQEV
EPDSQPAEENPSIHRNQRVLVNHAIQEIQHRPLEVPTIIGDDTVYTMDTQ
RVCCPHHLQTNLAHVYYANRKQIEAAIKSALSAQGTWSLVPIAQRLAIWR
RAATIIEEDELRLRVFLMMTLSKTADDATRDIRRLLTSLRANADYLEHLS
ELRFEIQGDMNVFPSFHLRPMDGFVAALAPFESVALSSSLALCPALMGNT
VLWNPSLEVAPVSYLIFRAFQEAGLPSGVINFVPANERLFLDTITDAVHF
AGLNTQASAAFYRHVHKLVSDRMERYICFPRLVAECPGQNFHFVHASAKV
ESVVSATVQAAFGFAGQYANSLSRMYVPSSMWPRLREELVEATEQLTIGD
PIESETDIGAMVHINDFRRMQKLLQRTKNMEQLCGGSCDDSTGRFVDPTI
VRVSDPLDPLLCEPCCGPFLPVFVYSDDSFSEALKLAANQSRYALSGSIF
ASQDEVILHCLNQLRMSASNLYVNERCTGSTYGLTPFGGNRLSGTNDKSG
SAYFLMRWSSPLLIEETVDGPPPMRGSNTFP*

GH20963.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6661-PA 581 CG6661-PA 1..581 1..581 3019 100 Plus
P5CDh1-PE 574 CG7145-PE 72..560 84..567 964 39.9 Plus
P5CDh1-PF 574 CG7145-PF 72..560 84..567 964 39.9 Plus
P5CDh1-PD 574 CG7145-PD 72..560 84..567 964 39.9 Plus
P5CDh1-PB 574 CG7145-PB 72..560 84..567 964 39.9 Plus