Clone GH21056 Report

Search the DGRC for GH21056

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:210
Well:56
Vector:pOT2
Associated Gene/TranscriptInx7-RB
Protein status:GH21056.pep: gold
Preliminary Size:1698
Sequenced Size:1708

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2977 2001-07-04 Blastp of sequenced clone
inx7 2008-04-29 Release 5.5 accounting
inx7 2008-08-15 Release 5.9 accounting
cm 2008-08-15 Release 5.9 accounting
inx7 2008-12-18 5.12 accounting
cm 2008-12-18 5.12 accounting

Clone Sequence Records

GH21056.complete Sequence

1708 bp (1708 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051561

> GH21056.complete
AATCAGGGAAAGTATACCTTCGATTCGGTGACCAAGACGCTGTCCTGGGA
TGTGGGACGGATCGATGTTTCCAAGTTGCCAAATATTAGGGGATCGGTTT
CCATTACGCCCGGTACGACCAACATCGATGCCAATCCATCCGTGAATGTC
CAGTTCCAAATCTCGCAGCTGGCCGTCTCTGGGCTAAAGGTAAATCGCCT
GGACATGTACGGCGAGAAGTACAAGCCTTTCAAGGGCGTCAAATACCTGA
CCAAGGCGGGCAAGTTCCAGGGTATATTGTGTGCTATGATGTGTGCAAAG
TAGAGCAAACAGCTCATTTGACAGGAACTACACTTGAGGTCTTTTATAGC
AATAGGACCTTTGAGTAAGCGGAGAAGTACGTGTGTTCAACAGCGTAAAG
AACCAATGAATCCAAACATATGACGTTGGTAAAGTCACTTCGGCACGTGC
GAAAATGCGATAGATGAAATTTCATATGAGCAGGATATGGTACGTGACCA
GAACCAAACTGCCTACAGGCCGGGAAGTGAGCCACCTGGTATAGGGGCAT
TCGATCCCGAAAAGGACACGATCAAGCGGCATGCATACTACCAGTGGGTG
CCCTTTGTCCTGTTCTTCCAGGCTCTCTGCTTCTACATTCCCCATGCCCT
GTGGAAGAGTTGGGAGGGCGGCCGGATCAAGGCCCTGGTCTTTGGCCTTC
GAATGGTGGGTCTAACGAGGTACCTGAAGAACGATAGTCTGCGTATCGGC
AAGCTGAACATTCCCTCGATGGCGGAGGCGGAGGAGCGGGTCAAGGACAT
TCGTCGCACAATGATCGACCGGATGCGGCTGAATCAATCGTGGGGTGCCC
ACTTGGTCTTCGCGGAGGTGCTCAATCTGATTAATCTTCTGCTGCAGATC
ACATGGACCAACCGTTTTTTGGGCGGTCAATTCCTCACACTGGGACCACA
TGCCCTGAAAAATCGGTGGTCCGACGAGCTGAGCGTTTTGGATCTAGTAT
TCCCGAAGATTACCAAGTGCAAGTTCCACAAATTTGGTGACTCTGGCTCC
ATTCAAATGCACGATGCCCTTTGCGTGATGGCGCTGAACATCATGAACGA
GAAGATCTACATTATTCTGTGGTTCTGGTACGCCTTCCTTTTGATTGTTA
CTGTTCTGGGACTGCTTTGGAGAATTTTAACCCTGTGCTTCTACAGAAAT
GTCACATTTACCCGCTGGTCTCTCTATTGGGCCAAGCCTGGCCAACTGGA
CGAAAACGAATTATTGGCGGTAATTGATAAGTGTAACTTTTCCAACTGGA
TGTTCCTTTTCTTCCTGCGCTCCAACCTTTCGGAGTTCCTATTCAAGAAG
GTTATCTATCATTTGGCTAGTGAGTTCCCCAATCCCGATCACGATAACGA
TGTCAATGCCTATCGAGAGGCACCGCCCACGCCCGCTAAGAACCGTTATC
CGGAGCTCAGTGGTCTGGATACGATTGATTCACCACTCTTGCACCTTCGA
CGCAATGGCTCGCCCTCTGCCGGCGGAGCCCAAGGGCCATCGACTTCGGA
TATGGCAAAGTTACCTGTATAATTTATGCATTTCAATTAACGCTAGGCAA
TTAATTATTGGAGCTTTGTCTTGTTTACACCTGTTTTTTTTTTATATATA
TATATGATCATTTCATTATAAATATATTTATTATTAAGAGAAAAAAAAAA
AAAAAAAA

GH21056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
inx7-RB 1690 inx7-RB 1..1690 1..1690 8450 100 Plus
inx7-RA 1933 inx7-RA 729..1932 488..1691 6020 100 Plus
cm-RA 1459 cm-RA 1011..1281 1..271 1355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6884279..6884989 1199..489 3555 100 Minus
chrX 22417052 chrX 6883718..6884208 1690..1200 2455 100 Minus
chrX 22417052 chrX 6896864..6897087 491..268 1120 100 Minus
chrX 22417052 chrX 6901568..6901743 271..96 880 100 Minus
chrX 22417052 chrX 6901851..6901948 98..1 475 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992883 1199..489 3555 100 Minus
X 23542271 X 6991611..6992102 1691..1200 2460 100 Minus
X 23542271 X 7004758..7004981 491..268 1120 100 Minus
X 23542271 X 7009489..7009664 271..96 880 100 Minus
X 23542271 X 7009772..7009869 98..1 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7000271..7000981 1199..489 3555 100 Minus
X 23527363 X 6999709..7000200 1691..1200 2460 100 Minus
X 23527363 X 7012856..7013079 491..268 1120 100 Minus
X 23527363 X 7017587..7017762 271..96 880 100 Minus
X 23527363 X 7017870..7017967 98..1 490 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:13:30 has no hits.

GH21056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:16 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6883718..6884208 1200..1690 100 <- Minus
chrX 6884279..6884988 490..1199 100 <- Minus
chrX 6896866..6897084 271..489 100 <- Minus
chrX 6901569..6901742 97..270 100 <- Minus
chrX 6901853..6901948 1..96 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:43:47 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1086 487..1572 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:54 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1086 487..1572 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:09 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 1..1086 487..1572 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:51 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1086 487..1572 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:09 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 1..1086 487..1572 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:46 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:54 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:09 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:51 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:09 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 1..1690 1..1690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:16 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
X 7004760..7004978 271..489 100 <- Minus
X 7009490..7009663 97..270 100 <- Minus
X 7009774..7009869 1..96 100   Minus
X 6991612..6992102 1200..1690 100 <- Minus
X 6992173..6992882 490..1199 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:16 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
X 7004760..7004978 271..489 100 <- Minus
X 7009490..7009663 97..270 100 <- Minus
X 7009774..7009869 1..96 100   Minus
X 6991612..6992102 1200..1690 100 <- Minus
X 6992173..6992882 490..1199 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:16 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
X 7004760..7004978 271..489 100 <- Minus
X 7009490..7009663 97..270 100 <- Minus
X 7009774..7009869 1..96 100   Minus
X 6991612..6992102 1200..1690 100 <- Minus
X 6992173..6992882 490..1199 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:09 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885645..6886135 1200..1690 100 <- Minus
arm_X 6886206..6886915 490..1199 100 <- Minus
arm_X 6898793..6899011 271..489 100 <- Minus
arm_X 6903523..6903696 97..270 100 <- Minus
arm_X 6903807..6903902 1..96 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:38 Download gff for GH21056.complete
Subject Subject Range Query Range Percent Splice Strand
X 7017872..7017967 1..96 100   Minus
X 6999710..7000200 1200..1690 100 <- Minus
X 7000271..7000980 490..1199 100 <- Minus
X 7012858..7013076 271..489 100 <- Minus
X 7017588..7017761 97..270 100 <- Minus

GH21056.pep Sequence

Translation from 486 to 1571

> GH21056.pep
MVRDQNQTAYRPGSEPPGIGAFDPEKDTIKRHAYYQWVPFVLFFQALCFY
IPHALWKSWEGGRIKALVFGLRMVGLTRYLKNDSLRIGKLNIPSMAEAEE
RVKDIRRTMIDRMRLNQSWGAHLVFAEVLNLINLLLQITWTNRFLGGQFL
TLGPHALKNRWSDELSVLDLVFPKITKCKFHKFGDSGSIQMHDALCVMAL
NIMNEKIYIILWFWYAFLLIVTVLGLLWRILTLCFYRNVTFTRWSLYWAK
PGQLDENELLAVIDKCNFSNWMFLFFLRSNLSEFLFKKVIYHLASEFPNP
DHDNDVNAYREAPPTPAKNRYPELSGLDTIDSPLLHLRRNGSPSAGGAQG
PSTSDMAKLPV*

GH21056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20329-PA 440 GF20329-PA 78..440 1..361 1571 78.4 Plus
Dana\GF20357-PA 367 GF20357-PA 91..352 17..296 476 37.5 Plus
Dana\GF17986-PA 395 GF17986-PA 98..357 17..295 439 34.3 Plus
Dana\GF20330-PA 362 GF20330-PA 91..359 17..303 391 31 Plus
Dana\GF16006-PA 435 GF16006-PA 147..360 4..230 289 32.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17644-PA 444 GG17644-PA 78..444 1..361 1771 90.5 Plus
Dere\GG19626-PA 367 GG19626-PA 91..358 17..302 499 37.7 Plus
Dere\GG12050-PA 394 GG12050-PA 98..385 17..319 434 33 Plus
Dere\GG17574-PA 372 GG17574-PA 92..359 17..302 418 33.6 Plus
Dere\GG17645-PA 362 GG17645-PA 91..359 17..303 370 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24273-PA 441 GH24273-PA 78..434 1..358 1292 68.4 Plus
Dgri\GH24686-PA 367 GH24686-PA 91..352 17..296 481 36.7 Plus
Dgri\GH19243-PA 394 GH19243-PA 86..357 7..295 436 33.9 Plus
Dgri\GH17771-PA 480 GH17771-PA 200..467 17..302 422 33.2 Plus
Dgri\GH24274-PA 362 GH24274-PA 91..360 17..304 369 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-PA 438 CG2977-PA 78..438 1..361 1936 99.7 Plus
Inx2-PD 367 CG4590-PD 91..358 17..302 514 37.7 Plus
Inx2-PC 367 CG4590-PC 91..358 17..302 514 37.7 Plus
Inx2-PB 367 CG4590-PB 91..358 17..302 514 37.7 Plus
Inx2-PA 367 CG4590-PA 91..358 17..302 514 37.7 Plus
shakB-PA 372 CG34358-PA 92..359 17..302 468 33.6 Plus
shakB-PF 292 CG34358-PF 3..279 11..302 462 33.2 Plus
shakB-PC 361 CG34358-PC 72..348 11..302 462 33.2 Plus
shakB-PH 377 CG34358-PH 88..364 11..302 462 33.2 Plus
shakB-PG 377 CG34358-PG 88..364 11..302 462 33.2 Plus
shakB-PI 377 CG34358-PI 88..364 11..302 462 33.2 Plus
shakB-PD 532 CG34358-PD 243..519 11..302 462 33.2 Plus
Inx3-PC 395 CG1448-PC 98..355 17..293 451 34.5 Plus
Inx3-PB 395 CG1448-PB 98..355 17..293 451 34.5 Plus
Inx3-PA 395 CG1448-PA 98..355 17..293 451 34.5 Plus
ogre-PF 362 CG3039-PF 91..359 17..303 395 31.7 Plus
ogre-PE 362 CG3039-PE 91..359 17..303 395 31.7 Plus
ogre-PD 362 CG3039-PD 91..359 17..303 395 31.7 Plus
ogre-PC 362 CG3039-PC 91..359 17..303 395 31.7 Plus
ogre-PB 362 CG3039-PB 91..359 17..303 395 31.7 Plus
ogre-PA 362 CG3039-PA 91..359 17..303 395 31.7 Plus
shakB-PE 316 CG34358-PE 57..303 38..302 393 31 Plus
zpg-PB 367 CG10125-PB 109..351 34..293 314 30.3 Plus
zpg-PA 367 CG10125-PA 109..351 34..293 314 30.3 Plus
Inx5-PB 419 CG7537-PB 161..403 34..293 296 28.9 Plus
Inx6-PA 481 CG17063-PA 114..416 5..324 283 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21580-PA 441 GI21580-PA 78..441 1..361 1310 68.9 Plus
Dmoj\GI21669-PA 367 GI21669-PA 91..352 17..296 476 37.1 Plus
Dmoj\GI24278-PA 394 GI24278-PA 85..385 6..318 440 31.8 Plus
Dmoj\GI15107-PA 372 GI15107-PA 92..359 17..302 423 33.6 Plus
Dmoj\GI21582-PA 362 GI21582-PA 91..361 17..305 381 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26810-PA 432 GL26810-PA 78..432 1..361 1443 76.6 Plus
Dper\GL23353-PA 395 GL23353-PA 98..358 17..296 414 33.1 Plus
Dper\GL26811-PA 362 GL26811-PA 91..359 17..303 375 30.3 Plus
Dper\GL13242-PA 368 GL13242-PA 91..361 14..302 301 28.3 Plus
Dper\GL14652-PA 404 GL14652-PA 117..390 4..294 291 26.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15552-PA 432 GA15552-PA 78..432 1..361 1440 76.6 Plus
Dpse\GA18281-PA 367 GA18281-PA 91..358 17..302 484 37 Plus
Dpse\GA25656-PA 372 GA25656-PA 92..359 17..302 425 33.6 Plus
Dpse\GA13015-PA 395 GA13015-PA 98..358 17..296 415 33.1 Plus
Dpse\GA26182-PA 362 GA26182-PA 91..359 17..303 375 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17485-PA 434 GM17485-PA 78..434 1..361 1768 93.1 Plus
Dsec\GM17498-PA 367 GM17498-PA 91..352 17..296 491 38.2 Plus
Dsec\GM12279-PA 395 GM12279-PA 85..357 6..295 434 31.7 Plus
Dsec\GM22657-PA 372 GM22657-PA 92..359 17..302 418 33.6 Plus
Dsec\GM17487-PA 362 GM17487-PA 91..359 17..303 362 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16170-PA 434 GD16170-PA 78..434 1..361 1778 93.6 Plus
Dsim\GD18012-PA 395 GD18012-PA 85..357 6..295 436 32.1 Plus
Dsim\GD16826-PA 347 GD16826-PA 91..332 17..296 377 32.9 Plus
Dsim\GD16171-PA 362 GD16171-PA 91..359 17..303 362 29.3 Plus
Dsim\GD13120-PA 367 GD13120-PA 108..367 33..306 291 29.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15802-PA 440 GJ15802-PA 78..440 1..361 1270 69.4 Plus
Dvir\GJ15793-PA 367 GJ15793-PA 91..352 17..296 475 37.5 Plus
Dvir\GJ18913-PA 372 GJ18913-PA 92..359 17..302 423 33.6 Plus
Dvir\GJ23057-PA 381 GJ23057-PA 86..298 7..233 397 36.1 Plus
Dvir\GJ15803-PA 362 GJ15803-PA 91..359 17..303 388 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25295-PA 439 GK25295-PA 78..439 1..361 1336 70.7 Plus
Dwil\GK25636-PA 367 GK25636-PA 91..353 17..297 485 37.7 Plus
Dwil\GK13974-PA 395 GK13974-PA 98..388 17..321 433 32.5 Plus
Dwil\GK20049-PA 372 GK20049-PA 92..359 17..302 417 33.6 Plus
Dwil\GK25296-PA 362 GK25296-PA 91..359 17..303 386 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17551-PA 444 GE17551-PA 78..444 1..361 1764 90.5 Plus
Dyak\GE15694-PA 367 GE15694-PA 91..358 17..302 498 37.7 Plus
Dyak\GE10490-PA 395 GE10490-PA 85..386 6..319 433 31.1 Plus
Dyak\GE15333-PA 372 GE15333-PA 92..359 17..302 418 33.6 Plus
Dyak\GE17553-PA 362 GE17553-PA 91..359 17..303 352 29.4 Plus

GH21056.hyp Sequence

Translation from 486 to 1571

> GH21056.hyp
MVRDQNQTAYRPGSEPPGIGAFDPEKDTIKRHAYYQWVPFVLFFQALCFY
IPHALWKSWEGGRIKALVFGLRMVGLTRYLKNDSLRIGKLNIPSMAEAEE
RVKDIRRTMIDRMRLNQSWGAHLVFAEVLNLINLLLQITWTNRFLGGQFL
TLGPHALKNRWSDELSVLDLVFPKITKCKFHKFGDSGSIQMHDALCVMAL
NIMNEKIYIILWFWYAFLLIVTVLGLLWRILTLCFYRNVTFTRWSLYWAK
PGQLDENELLAVIDKCNFSNWMFLFFLRSNLSEFLFKKVIYHLASEFPNP
DHDNDVNAYREAPPTPAKNRYPELSGLDTIDSPLLHLRRNGSPSAGGAQG
PSTSDMAKLPV*

GH21056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-PB 361 CG2977-PB 1..361 1..361 1940 100 Plus
Inx7-PA 438 CG2977-PA 78..438 1..361 1936 99.7 Plus
Inx2-PD 367 CG4590-PD 91..358 17..302 514 37.7 Plus
Inx2-PC 367 CG4590-PC 91..358 17..302 514 37.7 Plus
Inx2-PB 367 CG4590-PB 91..358 17..302 514 37.7 Plus