Clone GH21086 Report

Search the DGRC for GH21086

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:210
Well:86
Vector:pOT2
Associated Gene/TranscriptCG10752-RA
Protein status:GH21086.pep: gold
Preliminary Size:1765
Sequenced Size:1715

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10752 2001-01-01 Release 2 assignment
CG10752 2001-09-19 Blastp of sequenced clone
CG10752 2003-01-01 Sim4 clustering to Release 3
CG10752 2008-04-29 Release 5.5 accounting
CG10752 2008-08-15 Release 5.9 accounting
CG10752 2008-12-18 5.12 accounting

Clone Sequence Records

GH21086.complete Sequence

1715 bp (1715 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058432

> GH21086.complete
ATTTTCTAGAAGTAAGCCTTACATAATGGATGTATCCCAGTCAGATGGCC
CAACAGAAAATGAGGCTGGCGGAATGAAGAACATTACACATCAGTTCGAG
TTCATGTCTAATAGGTTGAAGGAGCATATGAAATACAACATCCTCCGTAA
CGCTGTGTTTTACAAGAAGATTCCCCTGCAGAAGAAACTAAAACTTGCCC
TTGAAAGAAATATCGGTCCCCATGCCTATATAATAGTTAACGATACAATC
TACAAGTGCCAAGTGTTCGTACTCCGCATCTACTGCAAGCTGTTTACCAA
CAACCTCAAGCGGGGTGACATAGTCAAGTTTCCCAGGGACGCGATGAGCA
ATGAGTGCTTTGAATTGGCCTATACCTGGATGACTAATAATGCGATACAT
TTGCCACGTGACAAGATAATAAATTTGCTCGCGGCCGCAAAATGTTTGCA
GTGCATTCCCTTGATCAAGCGCATCTTTGAGTTTCTTAACGACTACCGAA
CCCATTGCGAACTTTTTTCATTTAGCTGCTATTTGAAGGCCAAAGATATG
GGTATGACCCAGGTAGCCGACATGATGGTGTCCAGAGTGACCAAGTCCTT
CCTGGTACTAGTGTCCAATGGACAGTTCATTAAGATGGATATCGACGGCG
CGTGCACTCTGCTGAGATCGAGACACTTGGCTGTACAAAACGAGATCGAG
ATTTTTTATTCAGCTCTGCTCTGGCTAATATCAAACTATGAGATGCGCAT
AAAATACATTCCACGTGTTTTGAGCTTGGTAAGATTTCTTATGATTCCAG
CCGTATTTATTCTTCAATGGACGAGCAATCTTAAAGATCTCCGACCAGAA
CTTGCGAATGTCCTATGCCACTTTCTACACAATGCGATGCTGAGCCAATT
CGAATATTATACGGAAACCTTTCAGTCAGAATCTATAATACGCGGCAATC
GGCGCTGGGCTCAGGATCCACAGTGTCCATATTTATCACTTTTCAATGCA
AACGGTGACTCCGATCTCTCCCCAGATGTATTTTTTCGCTATCTGCGGCA
AATACAAAATTCACCTAAAAGCTTTGTAGCTCGATTGATAATGAAGGACC
ATATGGAATATGAAATTGGTGATGCACTGACGGTAAACGAATCATGGACA
TCAGAAAATTCCGCGGAAGATTTGAAGGAGCCTGGAGAATATAACTGTGC
TGTTGGAGGTACAAGTTCTACCGAAGATTTGGATGCCGCTCCTAATGTGA
AACAGACCTTTTATACTTCGGCAGTCGAGTTGGATTTGGATTTGCTTGCT
AAAAACCATTCCGTTTTTGATTCCGATTTGGATTCTTCTGAATCCTCCTC
TACAACCACATCAATAGATTCCTTTACGGATTGCAAAAACGGATCTGGTA
CTGAAGTAAATTTTCATGCAGAACACCCAGCAAATTCTAACGCAAGTTCT
TTCTCGGACTCCACCACATGTTCTGGTGGTGATTCCGAAACGGAATCCGT
TCAAGATTCCAATGTAGCGTGTACACCAAATTTGACTCCAGAATCCCCCA
CAGAGCCCGCCACGAATTCTGCAGAATATTCCGGTACAGTTTCTTCGACT
TATTCCCAAACCGATAGGATAAGCTCTGAGGTATATGAAACGTAACATTT
TTGAGTTAAATTATAAGATTTTTTTTTAACTTAAATGTTAAAAAAAAAAA
AAAAAAAAAAAAAAA

GH21086.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10752-RA 1777 CG10752-RA 86..1777 1..1692 8460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12943039..12944030 1689..699 4865 99.6 Minus
chr3L 24539361 chr3L 12944217..12944916 700..1 3455 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12952683..12953676 1692..699 4970 100 Minus
3L 28110227 3L 12953863..12954562 700..1 3500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12945783..12946776 1692..699 4970 100 Minus
3L 28103327 3L 12946963..12947662 700..1 3500 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:50:10 has no hits.

GH21086.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:16 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12943039..12944028 701..1689 99 <- Minus
chr3L 12944217..12944916 1..700 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:07 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1620 26..1645 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:06:00 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1620 26..1645 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:11 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1620 26..1645 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:41 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1620 26..1645 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:13 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1620 26..1645 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:36 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:06:00 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:11 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 86..1774 1..1689 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:41 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 1..1689 1..1689 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:13 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
CG10752-RA 86..1774 1..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:16 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12952686..12953674 701..1689 100 <- Minus
3L 12953863..12954562 1..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:16 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12952686..12953674 701..1689 100 <- Minus
3L 12953863..12954562 1..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:16 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12952686..12953674 701..1689 100 <- Minus
3L 12953863..12954562 1..700 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:11 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12945786..12946774 701..1689 100 <- Minus
arm_3L 12946963..12947662 1..700 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:51 Download gff for GH21086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12945786..12946774 701..1689 100 <- Minus
3L 12946963..12947662 1..700 100   Minus

GH21086.hyp Sequence

Translation from 0 to 1644

> GH21086.hyp
FSRSKPYIMDVSQSDGPTENEAGGMKNITHQFEFMSNRLKEHMKYNILRN
AVFYKKIPLQKKLKLALERNIGPHAYIIVNDTIYKCQVFVLRIYCKLFTN
NLKRGDIVKFPRDAMSNECFELAYTWMTNNAIHLPRDKIINLLAAAKCLQ
CIPLIKRIFEFLNDYRTHCELFSFSCYLKAKDMGMTQVADMMVSRVTKSF
LVLVSNGQFIKMDIDGACTLLRSRHLAVQNEIEIFYSALLWLISNYEMRI
KYIPRVLSLVRFLMIPAVFILQWTSNLKDLRPELANVLCHFLHNAMLSQF
EYYTETFQSESIIRGNRRWAQDPQCPYLSLFNANGDSDLSPDVFFRYLRQ
IQNSPKSFVARLIMKDHMEYEIGDALTVNESWTSENSAEDLKEPGEYNCA
VGGTSSTEDLDAAPNVKQTFYTSAVELDLDLLAKNHSVFDSDLDSSESSS
TTTSIDSFTDCKNGSGTEVNFHAEHPANSNASSFSDSTTCSGGDSETESV
QDSNVACTPNLTPESPTEPATNSAEYSGTVSSTYSQTDRISSEVYET*

GH21086.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10752-PA 539 CG10752-PA 1..539 9..547 2816 100 Plus
CG12857-PA 440 CG12857-PA 104..419 63..366 244 22.6 Plus
CG30357-PA 451 CG30357-PA 110..423 56..358 217 21.3 Plus
CG9970-PA 484 CG9970-PA 141..344 67..270 196 29 Plus
CG12857-PB 293 CG12857-PB 104..277 63..235 168 25.3 Plus

GH21086.pep Sequence

Translation from 25 to 1644

> GH21086.pep
MDVSQSDGPTENEAGGMKNITHQFEFMSNRLKEHMKYNILRNAVFYKKIP
LQKKLKLALERNIGPHAYIIVNDTIYKCQVFVLRIYCKLFTNNLKRGDIV
KFPRDAMSNECFELAYTWMTNNAIHLPRDKIINLLAAAKCLQCIPLIKRI
FEFLNDYRTHCELFSFSCYLKAKDMGMTQVADMMVSRVTKSFLVLVSNGQ
FIKMDIDGACTLLRSRHLAVQNEIEIFYSALLWLISNYEMRIKYIPRVLS
LVRFLMIPAVFILQWTSNLKDLRPELANVLCHFLHNAMLSQFEYYTETFQ
SESIIRGNRRWAQDPQCPYLSLFNANGDSDLSPDVFFRYLRQIQNSPKSF
VARLIMKDHMEYEIGDALTVNESWTSENSAEDLKEPGEYNCAVGGTSSTE
DLDAAPNVKQTFYTSAVELDLDLLAKNHSVFDSDLDSSESSSTTTSIDSF
TDCKNGSGTEVNFHAEHPANSNASSFSDSTTCSGGDSETESVQDSNVACT
PNLTPESPTEPATNSAEYSGTVSSTYSQTDRISSEVYET*

GH21086.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20354-PA 461 GF20354-PA 30..384 29..382 641 39.6 Plus
Dana\GF10674-PA 516 GF10674-PA 6..330 59..386 475 33.9 Plus
Dana\GF11239-PA 434 GF11239-PA 115..427 48..347 239 23.2 Plus
Dana\GF13514-PA 442 GF13514-PA 105..426 51..358 226 22.9 Plus
Dana\GF13524-PA 368 GF13524-PA 37..260 50..262 218 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13793-PA 635 GG13793-PA 1..628 1..538 1394 49.8 Plus
Dere\GG22401-PA 441 GG22401-PA 107..423 55..358 247 24.8 Plus
Dere\GG11552-PA 413 GG11552-PA 97..289 69..262 225 26.3 Plus
Dere\GG17626-PA 485 GG17626-PA 170..460 58..346 220 23.4 Plus
Dere\GG10620-PA 844 GG10620-PA 145..467 47..358 219 20.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16425-PA 330 GH16425-PA 35..319 69..354 413 30 Plus
Dgri\GH21146-PA 430 GH21146-PA 100..419 51..358 227 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10752-PA 539 CG10752-PA 1..539 1..539 2816 100 Plus
CG12857-PA 440 CG12857-PA 104..419 55..358 244 22.6 Plus
CG30357-PA 451 CG30357-PA 110..423 48..350 217 21.3 Plus
CG9970-PA 484 CG9970-PA 141..344 59..262 196 29 Plus
CG10801-PA 558 CG10801-PA 217..395 81..254 172 27.9 Plus
CG12857-PB 293 CG12857-PB 104..277 55..227 168 25.3 Plus
CG10801-PB 527 CG10801-PB 217..405 81..264 162 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12507-PA 415 GI12507-PA 33..341 44..355 456 33.9 Plus
Dmoj\GI15646-PA 307 GI15646-PA 49..272 97..321 299 32.4 Plus
Dmoj\GI18745-PA 431 GI18745-PA 97..420 48..358 242 23.8 Plus
Dmoj\GI23030-PA 407 GI23030-PA 54..371 26..343 222 24.6 Plus
Dmoj\GI20387-PA 503 GI20387-PA 194..488 75..355 207 22.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22016-PA 343 GL22016-PA 36..323 63..354 468 36.6 Plus
Dper\GL25561-PA 307 GL25561-PA 47..275 71..354 270 28.2 Plus
Dper\GL23923-PA 391 GL23923-PA 85..373 65..365 259 23.9 Plus
Dper\GL10625-PA 336 GL10625-PA 4..314 46..347 201 21.8 Plus
Dper\GL14185-PA 431 GL14185-PA 121..330 59..264 192 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27347-PA 339 GA27347-PA 36..323 63..354 454 36.3 Plus
Dpse\GA28036-PA 284 GA28036-PA 24..252 71..354 273 28.2 Plus
Dpse\GA27108-PA 385 GA27108-PA 85..327 65..319 238 24.6 Plus
Dpse\GA11860-PA 399 GA11860-PA 67..377 46..347 207 21.8 Plus
Dpse\GA30461-PA 451 GA30461-PA 112..417 55..350 205 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24620-PA 547 GM24620-PA 2..547 11..530 1833 68.1 Plus
Dsec\GM20186-PA 444 GM20186-PA 101..423 48..358 258 24.7 Plus
Dsec\GM14096-PA 465 GM14096-PA 122..326 59..263 213 28.4 Plus
Dsec\GM12292-PA 571 GM12292-PA 225..407 80..257 194 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12686-PA 557 GD12686-PA 2..554 11..539 1829 67.7 Plus
Dsim\GD25659-PA 444 GD25659-PA 101..423 48..358 259 23.5 Plus
Dsim\GD13368-PA 465 GD13368-PA 122..326 59..263 204 27.9 Plus
Dsim\GD16641-PA 570 GD16641-PA 156..406 7..257 195 25.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12413-PA 350 GJ12413-PA 33..340 44..354 499 32.2 Plus
Dvir\GJ19230-PA 382 GJ19230-PA 62..372 47..357 442 33 Plus
Dvir\GJ21767-PA 429 GJ21767-PA 97..418 48..358 254 23.3 Plus
Dvir\GJ24621-PA 415 GJ24621-PA 76..390 52..354 250 24.2 Plus
Dvir\GJ22113-PA 500 GJ22113-PA 180..485 69..355 245 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19618-PA 440 GK19618-PA 99..417 48..358 282 24.5 Plus
Dwil\GK11754-PA 437 GK11754-PA 80..288 56..270 256 28.4 Plus
Dwil\GK13774-PA 798 GK13774-PA 384..698 50..344 244 24.9 Plus
Dwil\GK19524-PA 376 GK19524-PA 58..272 62..276 234 27.3 Plus
Dwil\GK14125-PA 450 GK14125-PA 113..357 51..300 207 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20086-PA 630 GE20086-PA 1..623 1..539 1385 49.1 Plus
Dyak\GE17529-PA 485 GE17529-PA 171..460 59..346 226 22.8 Plus
Dyak\GE23737-PA 355 GE23737-PA 39..231 69..262 225 26.3 Plus
Dyak\GE22796-PA 828 GE22796-PA 105..448 29..350 224 23.2 Plus
Dyak\GE12290-PA 446 GE12290-PA 100..425 48..358 219 23.5 Plus