Clone GH21114 Report

Search the DGRC for GH21114

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:211
Well:14
Vector:pOT2
Associated Gene/TranscriptCG3344-RA
Protein status:GH21114.pep: gold
Preliminary Size:1678
Sequenced Size:1471

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3344 2001-01-01 Release 2 assignment
CG3344 2001-07-04 Blastp of sequenced clone
CG3344 2003-01-01 Sim4 clustering to Release 3
CG3344 2008-04-29 Release 5.5 accounting
CG3344 2008-08-15 Release 5.9 accounting
CG3344 2008-12-18 5.12 accounting

Clone Sequence Records

GH21114.complete Sequence

1471 bp (1471 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051562

> GH21114.complete
CCAAGTGTGCGGTTGTCTCTCGATCGGTGTCTCTTGGAATTGGAACTGAA
ACACTGGTGCAACATGGCTGGACGCGCTATCATCGCACTTTTGGCCCTAC
TGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGACCC
GGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACATGTT
CTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGCGTC
CGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGATAC
GGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCGCGA
CTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCGTGG
GCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAACAAC
AAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACACAAA
CCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTTATG
GCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATCAAG
CGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCCCTG
GACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGCAGT
TGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCCCTG
AAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTTGCA
GTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGGACT
TCTATAACGTGGAGACCCCAACATTGGGTGATCAGTACAGGTTGATGTCC
AGAGCTGCCATGACTCCGGAGGAGGTCATGTATCGCACCCTCGTGAAATT
CGATGTGGATGAGGACCGCGACAAATTGCTGGAGGATCTAATGCTTGGAC
CCGTGACCGAGGCCCTCGGAATCAACACCGGAGTGAAATGGGGCGCCCAG
AGCGGCACCACCTTCACCAAGCTGATGGGCGATTTCATGAAGCCAGCTGT
GGATGTTGTGGGTGAACTGCTGAACAACACCACCGTAAAAGTGGGCGTGT
TCTCCGGAGGACTGGACCTGATTTGCGCCACTCCGGGAGCCGTCAACTGG
ATCGAAGCAATGGAATGGTCCGCCAAGCCATCTTACCAGGTCTCTCCGCG
CGTGGGAATCACCGTAGATCGAGTTCTCGAGGGTTACGAGAAGACCTATG
GCAACTTCAGCATGTTTTGGGTCAACCGGGCTGGTCACATGGTTCCTGCC
GATAATCCCGCGGCCATGTCGCACATCCTGCGACACTTCACCAAATTCGG
TTAAACAAATTAGCCGGAGAAAAGCGTTAAAATAAAGATTATTTTCGAAA
TGTAAAAAAAAAAAAAAAAAA

GH21114.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1689 CG3344-RA 166..1619 1..1454 7270 100 Plus
CG32483-RA 1492 CG32483-RA 173..336 148..311 385 82.3 Plus
CG32483-RA 1492 CG32483-RA 545..707 520..682 365 81.5 Plus
CG31821-RA 1422 CG31821-RA 91..248 133..290 235 76.5 Plus
CG32483-RA 1492 CG32483-RA 376..448 351..423 215 86.3 Plus
CG32483-RA 1492 CG32483-RA 1163..1221 1144..1202 175 86.4 Plus
CG32483-RA 1492 CG32483-RA 461..519 436..494 160 84.7 Plus
CG32483-RA 1492 CG32483-RA 948..1013 929..994 150 81.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 686381..687173 922..130 3965 100 Minus
chr3L 24539361 chr3L 685742..686087 1453..1108 1715 99.7 Minus
chr3L 24539361 chr3L 686142..686328 1108..922 935 100 Minus
chr3L 24539361 chr3L 689229..689763 682..148 890 77.8 Minus
chr3L 24539361 chr3L 687623..687752 130..1 635 99.2 Minus
chr2L 23010047 chr2L 15900949..15901106 290..133 250 77.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686581..687373 922..130 3965 100 Minus
3L 28110227 3L 685941..686287 1454..1108 1735 100 Minus
3L 28110227 3L 686342..686528 1108..922 935 100 Minus
3L 28110227 3L 689408..689942 682..148 890 77.8 Minus
3L 28110227 3L 687802..687931 130..1 650 100 Minus
2L 23513712 2L 15902160..15902317 290..133 235 76.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 686581..687373 922..130 3965 100 Minus
3L 28103327 3L 685941..686287 1454..1108 1735 100 Minus
3L 28103327 3L 686342..686528 1108..922 935 100 Minus
3L 28103327 3L 687802..687931 130..1 650 100 Minus
3L 28103327 3L 689779..689942 311..148 385 82.3 Minus
3L 28103327 3L 689408..689570 682..520 365 81.5 Minus
2L 23513712 2L 15902160..15902317 290..133 235 76.5 Minus
3L 28103327 3L 689667..689739 423..351 215 86.3 Minus
3L 28103327 3L 688787..688845 1202..1144 175 86.4 Minus
3L 28103327 3L 689596..689654 494..436 160 84.7 Minus
2L 23513712 2L 15899746..15899815 589..520 155 81.4 Minus
3L 28103327 3L 689049..689114 994..929 150 81.8 Minus
Blast to na_te.dros performed on 2019-03-16 01:21:21 has no hits.

GH21114.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:22:13 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 685742..686086 1109..1453 99 <- Minus
chr3L 686142..686327 923..1108 100 <- Minus
chr3L 686381..687172 131..922 100 <- Minus
chr3L 687623..687752 1..130 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:10 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 64..1404 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:55 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 64..1404 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:06 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 64..1404 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:52 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 64..1404 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:32:04 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 64..1404 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:23:12 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 18..1470 1..1453 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:55 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 18..1470 1..1453 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:06 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 28..1480 1..1453 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:52 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 18..1470 1..1453 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:32:04 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 28..1480 1..1453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:13 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
3L 685942..686286 1109..1453 100 <- Minus
3L 686581..687372 131..922 100 <- Minus
3L 687802..687931 1..130 100   Minus
3L 686342..686527 923..1108 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:13 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
3L 685942..686286 1109..1453 100 <- Minus
3L 686581..687372 131..922 100 <- Minus
3L 687802..687931 1..130 100   Minus
3L 686342..686527 923..1108 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:22:13 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
3L 685942..686286 1109..1453 100 <- Minus
3L 686581..687372 131..922 100 <- Minus
3L 687802..687931 1..130 100   Minus
3L 686342..686527 923..1108 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:06 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 686581..687372 131..922 100 <- Minus
arm_3L 687802..687931 1..130 100   Minus
arm_3L 685942..686286 1109..1453 100 <- Minus
arm_3L 686342..686527 923..1108 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:39 Download gff for GH21114.complete
Subject Subject Range Query Range Percent Splice Strand
3L 685942..686286 1109..1453 100 <- Minus
3L 686342..686527 923..1108 100 <- Minus
3L 686581..687372 131..922 100 <- Minus
3L 687802..687931 1..130 100   Minus

GH21114.hyp Sequence

Translation from 0 to 1403

> GH21114.hyp
PSVRLSLDRCLLELELKHWCNMAGRAIIALLALLGFAGLASVDARKGYGP
GDQDWGFVDVRTGAHMFYWLYYTTANVSSYTERPLAIWLQGGPGASSTGY
GNFEELGPLKLDGSYRDWTWVKDMNVMFIDNPVGSGFSYVDGSSYYTTNN
KQIALDLVELMKGFYTNHPEFKTVPLHIFCESYGGKMAPEFALELDYAIK
RGEIESNFVSVALGDPWTSPIDSVLSWAPFLLQLGIVDQDGHDKIEASAL
KTKDYVDREKWTQATLQWSSTQSVVLRESKGVDFYNVETPTLGDQYRLMS
RAAMTPEEVMYRTLVKFDVDEDRDKLLEDLMLGPVTEALGINTGVKWGAQ
SGTTFTKLMGDFMKPAVDVVGELLNNTTVKVGVFSGGLDLICATPGAVNW
IEAMEWSAKPSYQVSPRVGITVDRVLEGYEKTYGNFSMFWVNRAGHMVPA
DNPAAMSHILRHFTKFG*

GH21114.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 446 CG3344-PA 1..446 22..467 2372 100 Plus
CG32483-PA 439 CG32483-PA 5..439 27..467 1663 70.3 Plus
CG31823-PA 427 CG31823-PA 14..427 32..467 1112 49.8 Plus
CG31821-PB 427 CG31821-PB 2..421 19..466 914 42.6 Plus
CG31821-PA 427 CG31821-PA 2..421 19..466 914 42.6 Plus

GH21114.pep Sequence

Translation from 63 to 1403

> GH21114.pep
MAGRAIIALLALLGFAGLASVDARKGYGPGDQDWGFVDVRTGAHMFYWLY
YTTANVSSYTERPLAIWLQGGPGASSTGYGNFEELGPLKLDGSYRDWTWV
KDMNVMFIDNPVGSGFSYVDGSSYYTTNNKQIALDLVELMKGFYTNHPEF
KTVPLHIFCESYGGKMAPEFALELDYAIKRGEIESNFVSVALGDPWTSPI
DSVLSWAPFLLQLGIVDQDGHDKIEASALKTKDYVDREKWTQATLQWSST
QSVVLRESKGVDFYNVETPTLGDQYRLMSRAAMTPEEVMYRTLVKFDVDE
DRDKLLEDLMLGPVTEALGINTGVKWGAQSGTTFTKLMGDFMKPAVDVVG
ELLNNTTVKVGVFSGGLDLICATPGAVNWIEAMEWSAKPSYQVSPRVGIT
VDRVLEGYEKTYGNFSMFWVNRAGHMVPADNPAAMSHILRHFTKFG*

GH21114.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24075-PA 446 GF24075-PA 1..446 1..446 2163 89.9 Plus
Dana\GF24074-PA 439 GF24074-PA 5..439 6..446 1606 66.9 Plus
Dana\GF14968-PA 428 GF14968-PA 16..428 12..446 1098 48 Plus
Dana\GF14967-PA 430 GF14967-PA 8..424 7..445 888 42.1 Plus
Dana\GF17355-PA 478 GF17355-PA 89..476 37..445 358 28.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14646-PA 446 GG14646-PA 1..446 1..446 2206 94.8 Plus
Dere\GG14645-PA 439 GG14645-PA 18..439 23..446 1649 71.5 Plus
Dere\GG24186-PA 427 GG24186-PA 14..427 11..446 1080 47.9 Plus
Dere\GG24185-PA 425 GG24185-PA 17..419 22..445 912 42.8 Plus
Dere\GG11055-PA 206 GG11055-PA 17..119 22..138 358 58.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16040-PA 446 GH16040-PA 8..446 7..446 1942 81.8 Plus
Dgri\GH16039-PA 442 GH16039-PA 8..442 10..446 1627 67.5 Plus
Dgri\GH11350-PA 665 GH11350-PA 266..665 24..446 1151 52.9 Plus
Dgri\GH21639-PA 479 GH21639-PA 87..477 35..445 371 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
hiro-PA 446 CG3344-PA 1..446 1..446 2372 100 Plus
CG32483-PA 439 CG32483-PA 5..439 6..446 1663 70.3 Plus
CG31823-PA 427 CG31823-PA 14..427 11..446 1112 49.8 Plus
CG31821-PB 427 CG31821-PB 7..421 5..445 909 42.8 Plus
CG31821-PA 427 CG31821-PA 7..421 5..445 909 42.8 Plus
CG4572-PD 482 CG4572-PD 89..480 35..445 366 28.3 Plus
CG4572-PB 482 CG4572-PB 89..480 35..445 366 28.3 Plus
CG4572-PA 482 CG4572-PA 89..480 35..445 366 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12303-PA 442 GI12303-PA 5..442 6..446 1922 81.4 Plus
Dmoj\GI12304-PA 450 GI12304-PA 5..443 6..446 1835 78.1 Plus
Dmoj\GI12302-PA 442 GI12302-PA 1..442 1..446 1644 67.7 Plus
Dmoj\GI17365-PA 422 GI17365-PA 22..422 22..446 1136 52.5 Plus
Dmoj\GI20092-PA 478 GI20092-PA 88..476 37..445 363 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20838-PA 445 GL20838-PA 1..445 1..446 1997 83.2 Plus
Dper\GL20837-PA 439 GL20837-PA 4..439 7..446 1677 70 Plus
Dper\GL15326-PA 426 GL15326-PA 14..426 12..446 1145 50.6 Plus
Dper\GL15319-PA 415 GL15319-PA 20..415 22..446 962 43.6 Plus
Dper\GL15325-PA 426 GL15325-PA 8..421 6..445 902 42.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17392-PA 445 GA17392-PA 1..445 1..446 1998 83.2 Plus
Dpse\GA16937-PA 439 GA16937-PA 4..439 7..446 1677 70 Plus
Dpse\GA16505-PA 426 GA16505-PA 14..426 12..446 1145 50.6 Plus
Dpse\GA16504-PA 426 GA16504-PA 8..421 6..445 898 42.3 Plus
Dpse\GA28793-PA 399 GA28793-PA 3..399 4..446 858 40.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14261-PA 446 GM14261-PA 1..446 1..446 2334 97.5 Plus
Dsec\GM17924-PA 427 GM17924-PA 14..427 11..446 1128 50 Plus
Dsec\GM17923-PA 425 GM17923-PA 5..419 5..445 915 43.3 Plus
Dsec\GM14260-PA 262 GM14260-PA 18..162 23..167 683 84.8 Plus
Dsec\GM14260-PA 262 GM14260-PA 165..262 349..446 389 70.4 Plus
Dsec\GM26891-PA 482 GM26891-PA 89..480 35..445 364 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13518-PA 446 GD13518-PA 1..446 1..446 2327 97.3 Plus
Dsim\GD13517-PA 439 GD13517-PA 19..439 24..446 1630 70.7 Plus
Dsim\GD11968-PA 285 GD11968-PA 1..285 140..446 690 45.6 Plus
Dsim\GD20098-PA 482 GD20098-PA 89..480 35..445 358 28.7 Plus
Dsim\GD21932-PA 123 GD21932-PA 26..123 349..446 317 56.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13240-PA 444 GJ13240-PA 3..444 4..446 1974 83.1 Plus
Dvir\GJ13239-PA 442 GJ13239-PA 4..442 2..446 1667 70.3 Plus
Dvir\GJ18041-PA 478 GJ18041-PA 72..478 12..446 1147 52.2 Plus
Dvir\GJ19859-PA 479 GJ19859-PA 63..477 4..445 371 26.9 Plus
Dvir\GJ22150-PA 481 GJ22150-PA 91..479 37..445 327 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16683-PA 445 GK16683-PA 5..445 6..446 2017 83.9 Plus
Dwil\GK16682-PA 442 GK16682-PA 5..442 7..446 1661 69.3 Plus
Dwil\GK24263-PA 426 GK24263-PA 17..426 18..446 1119 51.4 Plus
Dwil\GK24262-PA 428 GK24262-PA 6..420 11..445 892 44 Plus
Dwil\GK22811-PA 481 GK22811-PA 92..479 37..445 373 27.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21006-PA 446 GE21006-PA 20..446 20..446 2215 96 Plus
Dyak\GE21005-PA 439 GE21005-PA 5..439 6..446 1632 68.7 Plus
Dyak\GE19379-PA 427 GE19379-PA 14..427 11..446 1105 48.6 Plus
Dyak\GE19378-PA 425 GE19378-PA 13..419 18..445 938 44.4 Plus
Dyak\GE25110-PA 482 GE25110-PA 89..480 35..445 369 28.9 Plus