Clone GH21160 Report

Search the DGRC for GH21160

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:211
Well:60
Vector:pOT2
Associated Gene/Transcriptsprt-RA
Protein status:GH21160.pep: gold
Preliminary Size:3660
Sequenced Size:2795

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9026 2001-01-01 Release 2 assignment
CG30023 2001-07-04 Blastp of sequenced clone
CG30023 2003-01-01 Sim4 clustering to Release 3
sprt 2008-04-29 Release 5.5 accounting
sprt 2008-08-15 Release 5.9 accounting
sprt 2008-12-18 5.12 accounting

Clone Sequence Records

GH21160.complete Sequence

2795 bp (2795 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051563

> GH21160.complete
ACGCGATCGGTTGTGCTCGCACTCTCCGTGTAATCCGAACCCGATTTTGT
GATTAGCCCTCCGCTGCGCCTGCGTGAATTCGTGGACCTTCTTCAATCAA
CCTGAACCTACGTGAATTTGTGCGTTTTGTTTACTTGTTTACTTGGCCCA
TTTGAAAGCAAATTTCCTGCATCCTGCATAAACAGAGGAAACGCACAGCG
GAAATAGTATGAGTTATTAAGTCGCTGCAAACGGAAATAATTAACAAAAA
AAAAATAAAACTAAATGTGCCGATCGCGTTTTAGCAACGGTTTCGATGCG
GTTTCAAACACAATCGGTTTAAGCATTGACATCATTGATTTATGTCCCAA
GTGTAAATAATTCGCACAATACAATACACCAAATTGAGGCTTCCCTCCCT
CCACCAAATCAAACAAATCAAATGCAATGAAATGAAATGTTGCCATTAAT
TTGCGCACATTGCCATTGTTCAGAGTTATTGGTTGACTTTTAACTGGGAT
CCGTACTACTTTAAGCTGAGCTGTAAACGAAGACCACGAGGGTTTTCCAT
TATGGACACCGGAAGTGTGGTTAGTGAACCGATTTCCGCGCATCATCGCG
CCTTCGCCAAACAGAAGTCCGCCTCCATGACCATTCTCAATCCGAAGGGT
TGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGACTGCAGAGACGAACCA
GGAGACTGCCAGTACCACGACCACCTCTACCCATTGTTCCACAACTGGAA
GAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTCTCCTCGCGATCGACG
CGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCAGGATCGGGAGGCTGT
CATCCAGAATCTGCGTATACAGCTTTGTCTGGGCAAACTGCCACGTCCCA
CGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCGGCTGAGCAAAAACTA
AACAGACTGAAGACGGAGGCGGAGAATAAGCGAATTAAGATCAAGAACCT
GAAGAGTGCCCTGGAGAAGCTGGACATCACAGACAACATAGACATCCGCA
TCCGTCAAGCCGAATTGGAATACGCACTCGGCAGAGAAGAACTCCAGATG
CTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGCACGTCTGGAAAAGTC
CAAGCCCGAGGCGCAGACCCTCTACAACATCATCAGCTCTGGAGTCTCCC
TGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGATGGGCAGTTCAACAG
AGGACAGACCAGCCGGGTTTCTACGTAGAATGGGCTTTAGAGGGTGATGG
CTTGTACAAGGGCGATCGCATTTTGGAGATCAACGGACGACTGGTAACCG
GAAAATCCAAGGAAGAGCTGCAGAAGCAAGTAGGAAACTCTGGCAAGTGT
CAGATGGTTGTACTCCGCAAGAAGTCCGTACCTATACCACAAAAGCAACT
AGACCAGGAGAAGGAGAACAACATGAGGCTGCAGCATCGCATATCGTACC
TGGAAGAGCAGGTGCGAGAACTGCAGACAGTCAAGGAGCATCATCCATCG
CAACAGCAGCAGCAGCAGCAGCAGCAACAGCAAAATCCACAGCAAAATCC
ACAGCAAAATCCACAGCAGACATCCTCCAATCAATCTCAGCATGTGACCA
GCATCAGCATATCATCACCTCCATCAACACCGCCCGAGAAACCGTTGATC
TTTCAGCGGGGCAACTATATTACCACTTTGGTGGGGGGCAAACCCATCGA
GCTGATGGGTGACGACATGGCCTCGACACAAACCCCTCCCGGACATGTAA
CCAAAACACTGATCAAGGAGAATACCCACATCGATTTGAGAGATCGTCTG
TCGCACATGTACTCCATGCCCTCCAAATCGCTGTCCGCCTCGAAGATCTC
GATTAATAGCGATTCTGCCTATATGCAGCACCATCGACGTGATAAGGAGC
GCCATCGCGATCGCCAGCACCGGGAACGCCCCAGAGATCCTCTCCAGCAA
CAGCAGCAACTGCATCGCGAACATCTCATGAGCACGCACGCACGCAGTGT
AGAGCACCTGAATCATTACAATGGACTGGATCGTCGCCGAGACACGCCCC
GACAAAGTGAGTCGAACACACTTCGAGCCCGCCTGCCCAGCGATATGAGG
AGTGTAAAATCCCTGGATTTCGATAGCGAAAACGAATCGAAGCCTGCGAC
TGAGACGCGTACCACTAGACCCACTCCGCCCAAGAAACCCCTCCGGCTAT
CGCTGCAACGAGCCCAAAGTCTGCAGACCGTGGAGCTGCACCCCTGTGCG
GATATCGAACGAAAGCGGCCCATGAAGAGGGTCCACCACAACAACAACAA
CAACAACAAAGGTGGAGAATCACCGACTGGAGAGGGCCAGACCATGCTCA
TCGAGAACTGCAGTCCCATGCACACGGCTTCCCTCGGCAGGCACAAGCTC
ATCTAGAAACCCGATCCCAATCCAACCAAAACTAATTGTTAATCGAAGTA
GCTTAATCCTCGACCGATCCTAACCGGCGGTTAAACCCAAAAAACAGGCG
GACATGTGCAAAATTACAGTAGGCAATATAATTTTAACCAGCTCCCAAGT
GGAAAGTTTCTTATTATGTAGTAGCAGTAGTATGTACTTACATTCTATAT
CTTGTATAAGTAGGGCTTGGCTATCAACATTTAGTATTGAGAGAATCAAT
AATTAAGAGTTTTTGTATGTACGATGATTTTATTAGCACAATTTACAAAT
GTGAATACACGAATATTTTCACCTAAAAAAAAAAAAAAAAAAAAA

GH21160.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-RA 2872 sprt-RA 88..2862 1..2775 13875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7272998..7274038 2074..1034 5190 99.9 Minus
chr2R 21145070 chr2R 7272185..7272885 2774..2074 3490 99.9 Minus
chr2R 21145070 chr2R 7284350..7284867 518..1 2575 99.8 Minus
chr2R 21145070 chr2R 7274105..7274509 1033..629 2010 99.8 Minus
chr2R 21145070 chr2R 7278517..7278628 629..518 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11385556..11386596 2074..1034 5205 100 Minus
2R 25286936 2R 11384742..11385443 2775..2074 3510 100 Minus
2R 25286936 2R 11396894..11397411 518..1 2590 100 Minus
2R 25286936 2R 11386663..11387067 1033..629 2025 100 Minus
2R 25286936 2R 11391071..11391182 629..518 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11386755..11387795 2074..1034 5205 100 Minus
2R 25260384 2R 11385941..11386642 2775..2074 3510 100 Minus
2R 25260384 2R 11398093..11398610 518..1 2590 100 Minus
2R 25260384 2R 11387862..11388266 1033..629 2025 100 Minus
2R 25260384 2R 11392270..11392381 629..518 560 100 Minus
Unimproved_211000022255336_918_2978 2060 Unimproved_211000022255336_918_2978 257..310 54..1 195 90.7 Minus
Blast to na_te.dros performed 2019-03-16 11:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2535 1467..1681 255 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2412 1925..2025 127 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2529 1926..2025 116 62 Plus

GH21160.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:32:09 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7272998..7273453 1619..2074 99 == Minus
chr2R 7272185..7272884 2075..2774 96 <- Minus
chr2R 7273523..7274038 1034..1549 100 <- Minus
chr2R 7274105..7274508 630..1033 99 <- Minus
chr2R 7278517..7278627 519..629 100 <- Minus
chr2R 7284350..7284867 1..518 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:12:33 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1..1905 552..2456 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:44 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1..1905 552..2456 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:46:06 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1..1905 552..2456 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:41 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1..1905 552..2456 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:21 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1..1905 552..2456 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:12:32 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 20..2793 1..2774 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:44 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 20..2793 1..2774 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:46:06 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 22..2795 1..2774 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:41 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 20..2793 1..2774 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:21 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 22..2795 1..2774 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:32:09 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11384743..11385442 2075..2774 100 <- Minus
2R 11385556..11386596 1034..2074 100 <- Minus
2R 11386663..11387066 630..1033 100 <- Minus
2R 11391071..11391181 519..629 100 <- Minus
2R 11396894..11397411 1..518 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:32:09 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11384743..11385442 2075..2774 100 <- Minus
2R 11385556..11386596 1034..2074 100 <- Minus
2R 11386663..11387066 630..1033 100 <- Minus
2R 11391071..11391181 519..629 100 <- Minus
2R 11396894..11397411 1..518 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:32:09 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11384743..11385442 2075..2774 100 <- Minus
2R 11385556..11386596 1034..2074 100 <- Minus
2R 11386663..11387066 630..1033 100 <- Minus
2R 11391071..11391181 519..629 100 <- Minus
2R 11396894..11397411 1..518 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:46:06 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7272248..7272947 2075..2774 100 <- Minus
arm_2R 7273061..7274101 1034..2074 100 <- Minus
arm_2R 7274168..7274571 630..1033 100 <- Minus
arm_2R 7278576..7278686 519..629 100 <- Minus
arm_2R 7284399..7284916 1..518 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:26 Download gff for GH21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11385942..11386641 2075..2774 100 <- Minus
2R 11386755..11387795 1034..2074 100 <- Minus
2R 11387862..11388265 630..1033 100 <- Minus
2R 11392270..11392380 519..629 100 <- Minus
2R 11398093..11398610 1..518 100   Minus

GH21160.hyp Sequence

Translation from 551 to 2455

> GH21160.hyp
MDTGSVVSEPISAHHRAFAKQKSASMTILNPKGCGSAVKYSLHSTAETNQ
ETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDREAV
IQNLRIQLCLGKLPRPTGPPLDESEKPAAEQKLNRLKTEAENKRIKIKNL
KSALEKLDITDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKS
KPEAQTLYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEGDG
LYKGDRILEINGRLVTGKSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQL
DQEKENNMRLQHRISYLEEQVRELQTVKEHHPSQQQQQQQQQQQNPQQNP
QQNPQQTSSNQSQHVTSISISSPPSTPPEKPLIFQRGNYITTLVGGKPIE
LMGDDMASTQTPPGHVTKTLIKENTHIDLRDRLSHMYSMPSKSLSASKIS
INSDSAYMQHHRRDKERHRDRQHRERPRDPLQQQQQLHREHLMSTHARSV
EHLNHYNGLDRRRDTPRQSESNTLRARLPSDMRSVKSLDFDSENESKPAT
ETRTTRPTPPKKPLRLSLQRAQSLQTVELHPCADIERKRPMKRVHHNNNN
NNKGGESPTGEGQTMLIENCSPMHTASLGRHKLI*

GH21160.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-PA 634 CG30023-PA 1..634 1..634 3265 100 Plus

GH21160.pep Sequence

Translation from 551 to 2455

> GH21160.pep
MDTGSVVSEPISAHHRAFAKQKSASMTILNPKGCGSAVKYSLHSTAETNQ
ETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDREAV
IQNLRIQLCLGKLPRPTGPPLDESEKPAAEQKLNRLKTEAENKRIKIKNL
KSALEKLDITDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKS
KPEAQTLYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEGDG
LYKGDRILEINGRLVTGKSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQL
DQEKENNMRLQHRISYLEEQVRELQTVKEHHPSQQQQQQQQQQQNPQQNP
QQNPQQTSSNQSQHVTSISISSPPSTPPEKPLIFQRGNYITTLVGGKPIE
LMGDDMASTQTPPGHVTKTLIKENTHIDLRDRLSHMYSMPSKSLSASKIS
INSDSAYMQHHRRDKERHRDRQHRERPRDPLQQQQQLHREHLMSTHARSV
EHLNHYNGLDRRRDTPRQSESNTLRARLPSDMRSVKSLDFDSENESKPAT
ETRTTRPTPPKKPLRLSLQRAQSLQTVELHPCADIERKRPMKRVHHNNNN
NNKGGESPTGEGQTMLIENCSPMHTASLGRHKLI*

GH21160.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12395-PA 657 GF12395-PA 1..657 1..634 2013 68.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22649-PA 660 GG22649-PA 1..660 1..634 2270 73.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20506-PA 698 GH20506-PA 196..698 161..634 1682 72.8 Plus
Dgri\GH11745-PA 62 GH11745-PA 1..62 580..634 150 54.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-PA 634 CG30023-PA 1..634 1..634 3265 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21050-PA 859 GI21050-PA 247..859 27..634 2297 78.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10396-PA 622 GL10396-PA 59..381 161..500 1275 83.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30463-PA 615 GA30463-PA 1..615 1..634 2565 85.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20431-PA 623 GM20431-PA 1..623 1..634 3243 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25902-PA 657 GD25902-PA 1..657 1..634 2483 74.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21974-PA 673 GJ21974-PA 196..673 161..634 1762 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21885-PA 847 GK21885-PA 247..847 27..634 2151 77.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13523-PA 658 GE13523-PA 1..658 1..634 2413 73.2 Plus