Clone GH21176 Report

Search the DGRC for GH21176

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:211
Well:76
Vector:pOT2
Associated Gene/TranscriptCG6406-RA
Protein status:GH21176.pep: gold
Preliminary Size:2247
Sequenced Size:2319

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6406 2001-11-09 Blastp of sequenced clone
CG6406 2003-01-01 Sim4 clustering to Release 3
CG6406 2008-04-29 Release 5.5 accounting
CG6406 2008-08-15 Release 5.9 accounting
CG6406 2008-12-18 5.12 accounting

Clone Sequence Records

GH21176.complete Sequence

2319 bp (2319 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069171

> GH21176.complete
CCCTGGCTTATTTGGGAAAAAATTAAGAGGGAGCAGCAGCGGAGGCTAGT
GATAAATTAATTAGCCACTGCTACCACATAACCCAGGGTGCGGAAACCTG
AACCCAGCTCTGCGGCATATCCACTACCATTGCTAGCACCCCGGTTGCCA
TCCAGATTCTGTTACCAGCTCAGGGTAACGACGATGGCGGAACTGGTGAG
GGACTGGCTGGCGGACTACCAGCGCATACGGGGTCAGCCCTCGGAGGCGG
AAGCGTTCGTGGTGGAGCACGAAACAGATCCCGAGATCGCCGAAGCCATA
TTCACCATCTTCAACGAGCGACAGCGGAACGAAACGCTGGTTCACGACAT
CTGCCAGCAGCTACTGGCCTTCTACCGCTCGCCGGAGCAGACGCTGCACA
AGTTCCCGCTGCAGTTCATCCCAGTGCTTCTCTACACGTACCTCCACTCG
GTGGCCGGCGGCGATAAGAAGGCTGCGCGCGGCGTGGAGACGCTGCTCAT
CTGCATTTACAATGGCGAGGTGTCCACCGAAGACGGCGGCCAGAAGGTGG
TGGCCTTTCGCATGCCCATCCTGGCCCAGACGTCCGTTTACCACGAGGTA
AAGAACCTGCCCATGACGGATCTGCGCCGTTGGGAGGAGAACTGCAACCG
GGAGGTGAAGTGGGGTCCACACCAGCGCATCGAATCGATTCATGCCCAGA
ACCGAATGCGTATTCTTACTGCTTTGCTGTTCTGCTACAACCAGCAGGTC
AGCCAAACGCAGAAGTCTTCGCTACTGCACTTGTGCCGGGTCACATCGCA
GTTGGTGAACCAAGGATTCACCACGAAGTCGGGTCATGGCCATCGAATGA
GTTATGGATCTGATCCTGCAACCGGAGTACCTTTTCCCAAGCCCTCTTCA
CCGCGCATTCCACTGTCCGCCGCCTTCCTGATCGAGCTGGTGCACGCCAT
CTATTTCGCCATGTTTAATGGCTTCGGCACGATAGCCATTCAGACACTGG
ACGACATCCACAACCGGGCCATCTACGAGATGTACTCGGAAGTGATCCTG
GTGACCAGCGCAGTGCGAAATTCGCTGCACGCCAATCCTTCCGGACAGCC
CAACGACGGTCCCATGGGCTTGAGTGTGGCCTTAACGCCGTCCACAACAA
CGGTGACCACATCGGTGTCCAAGTCTATGATCACGAACGCATCCTTCCGT
ACGAAAAAACTGCCCGACGACATACCCATCCAGGTACAGGACCTCACAAT
ACAGCAGGCTCCGCAGCAGCTGGCCAGCGTCACTGAGGAGACGGAACCGG
GCACCAAGGAATCGCCCTCAACGAAGGAGAGTTCCGGTACGCGCACTTCC
ATCATGCGGCCCAGCATGGAGGGCATCAAGGCACAGGCACACAAGGCGCT
CATTGCGGGCTTCAAGAAATCTAAGGACAAGGAGAAAGAGAAGGACAAGG
AGCCACCGAAGCCACCGCAGCGCAAGTTCGACAAGCACACGCAGCGCAAC
TCACTGCTCCAGCTGCAGGCGGAACCCAGCTCGAATTCCAGCGCGGAACA
GCCACCCACCGGCGAAGTGTTGCCCCTGCAGACGCTCTCGCTGATCAACG
AGAACGGCAGCAACAGTTTCAGCGTGGACAGCGACCTCAACGACGGCGTG
CTGGGCGTAAGTGCCAACACATCCCTGCCCCCGCTGAGCAGCACCACCAA
CTCGGTGACCAGTAGCGACCTGATCACCAAGAGCTTCGACTCCAGCATTG
AACTGGCGCCGATAGGGCACAGCAGCAGCAATGGCGGCAAGTTGGCCGAG
CACGGCTTGGCGGAGTAGTGCAATCAATCGTCTCGTTCCAAAGGCGATTA
GCCAAATCCAAGTATCAAGTATATAAATTTACAACTACAACTGGGGTGAG
TGGGTTTTGTATGAATGCAATAATAGATGTAGGCATTGTGCAGGCATTTT
TTTTTTTGTAATACAAGGATAATTCTAGGGCATTTCGTTTGCAATTTTGA
TCAAGTTATACCAATATATATAATTTATCATTATTACCAGTTTGTCAATA
TATAAAGTAATGTTTCTGGTTAGATGCAATTATAGCCCCTGCATTTTGGT
CGGACCCTATATTGTGAATACTTAGAATTATCCAAAGATTTCATGCCGAC
ACAATGGCATCATGACCGCGAGATTCACTCACCCTAAATTATGTGTACAT
TCGCCACCTACCGCTGTGTATTAGCCGAATAGAACCGTGGCTCGAAATTT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

GH21176.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-RA 2774 CG6406-RA 60..2312 1..2253 11265 100 Plus
CG6406-RB 2780 CG6406-RB 219..2318 154..2253 10500 100 Plus
CG6406-RB 2780 CG6406-RB 60..214 1..155 775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13622016..13623410 2251..857 6975 100 Minus
chr2R 21145070 chr2R 13623465..13624169 857..153 3525 100 Minus
chr2R 21145070 chr2R 13624229..13624383 155..1 775 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17734881..17736277 2253..857 6985 100 Minus
2R 25286936 2R 17736332..17737036 857..153 3525 100 Minus
2R 25286936 2R 17737096..17737250 155..1 775 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17736080..17737476 2253..857 6985 100 Minus
2R 25260384 2R 17737531..17738235 857..153 3525 100 Minus
2R 25260384 2R 17738295..17738449 155..1 775 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:25:32 has no hits.

GH21176.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:26:54 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13622016..13623409 858..2251 97 <- Minus
chr2R 13623465..13624166 156..857 100 <- Minus
chr2R 13624229..13624383 1..155 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:19 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 1..1635 184..1818 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:18 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 1..1635 184..1818 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:52 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RB 1..1635 184..1818 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:53 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 1..1635 184..1818 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:37:13 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RB 1..1635 184..1818 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:20 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 15..2265 1..2251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:18 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 15..2265 1..2251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:52 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 20..2270 1..2251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:53 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 15..2265 1..2251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:37:13 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 20..2270 1..2251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:26:54 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17734883..17736276 858..2251 100 <- Minus
2R 17736332..17737033 156..857 100 <- Minus
2R 17737096..17737250 1..155 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:26:54 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17734883..17736276 858..2251 100 <- Minus
2R 17736332..17737033 156..857 100 <- Minus
2R 17737096..17737250 1..155 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:26:54 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17734883..17736276 858..2251 100 <- Minus
2R 17736332..17737033 156..857 100 <- Minus
2R 17737096..17737250 1..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:52 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13622388..13623781 858..2251 100 <- Minus
arm_2R 13623837..13624538 156..857 100 <- Minus
arm_2R 13624601..13624755 1..155 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:40 Download gff for GH21176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17736082..17737475 858..2251 100 <- Minus
2R 17737531..17738232 156..857 100 <- Minus
2R 17738295..17738449 1..155 100   Minus

GH21176.pep Sequence

Translation from 183 to 1817

> GH21176.pep
MAELVRDWLADYQRIRGQPSEAEAFVVEHETDPEIAEAIFTIFNERQRNE
TLVHDICQQLLAFYRSPEQTLHKFPLQFIPVLLYTYLHSVAGGDKKAARG
VETLLICIYNGEVSTEDGGQKVVAFRMPILAQTSVYHEVKNLPMTDLRRW
EENCNREVKWGPHQRIESIHAQNRMRILTALLFCYNQQVSQTQKSSLLHL
CRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIPLSAAFLI
ELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHA
NPSGQPNDGPMGLSVALTPSTTTVTTSVSKSMITNASFRTKKLPDDIPIQ
VQDLTIQQAPQQLASVTEETEPGTKESPSTKESSGTRTSIMRPSMEGIKA
QAHKALIAGFKKSKDKEKEKDKEPPKPPQRKFDKHTQRNSLLQLQAEPSS
NSSAEQPPTGEVLPLQTLSLINENGSNSFSVDSDLNDGVLGVSANTSLPP
LSSTTNSVTSSDLITKSFDSSIELAPIGHSSSNGGKLAEHGLAE*

GH21176.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13230-PA 555 GF13230-PA 1..555 1..544 2519 89.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21025-PA 544 GG21025-PA 1..544 1..544 2883 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20398-PA 559 GH20398-PA 1..558 1..542 2303 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-PA 544 CG6406-PA 1..544 1..544 2791 100 Plus
CG6406-PB 544 CG6406-PB 1..544 1..544 2791 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19584-PA 556 GI19584-PA 1..555 1..542 2276 80.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17281-PA 514 GL17281-PA 1..514 1..544 2381 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19568-PA 543 GA19568-PA 1..543 1..544 2536 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19955-PA 544 GM19955-PA 1..544 1..544 2896 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25446-PA 544 GD25446-PA 1..544 1..544 2904 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18314-PA 560 GJ18314-PA 1..559 1..542 2294 79.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22951-PA 561 GK22951-PA 1..557 1..541 2244 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13968-PA 545 GE13968-PA 1..545 1..544 2842 97.1 Plus

GH21176.hyp Sequence

Translation from 183 to 1817

> GH21176.hyp
MAELVRDWLADYQRIRGQPSEAEAFVVEHETDPEIAEAIFTIFNERQRNE
TLVHDICQQLLAFYRSPEQTLHKFPLQFIPVLLYTYLHSVAGGDKKAARG
VETLLICIYNGEVSTEDGGQKVVAFRMPILAQTSVYHEVKNLPMTDLRRW
EENCNREVKWGPHQRIESIHAQNRMRILTALLFCYNQQVSQTQKSSLLHL
CRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIPLSAAFLI
ELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHA
NPSGQPNDGPMGLSVALTPSTTTVTTSVSKSMITNASFRTKKLPDDIPIQ
VQDLTIQQAPQQLASVTEETEPGTKESPSTKESSGTRTSIMRPSMEGIKA
QAHKALIAGFKKSKDKEKEKDKEPPKPPQRKFDKHTQRNSLLQLQAEPSS
NSSAEQPPTGEVLPLQTLSLINENGSNSFSVDSDLNDGVLGVSANTSLPP
LSSTTNSVTSSDLITKSFDSSIELAPIGHSSSNGGKLAEHGLAE*

GH21176.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-PA 544 CG6406-PA 1..544 1..544 2791 100 Plus
CG6406-PB 544 CG6406-PB 1..544 1..544 2791 100 Plus