Clone GH21247 Report

Search the DGRC for GH21247

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:212
Well:47
Vector:pOT2
Associated Gene/TranscriptCG12822-RB
Protein status:GH21247.pep: gold
Preliminary Size:1751
Sequenced Size:1489

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12822 2002-01-01 Sim4 clustering to Release 2
CG12822 2002-05-18 Blastp of sequenced clone
CG12822 2003-01-01 Sim4 clustering to Release 3
CG12822 2008-04-29 Release 5.5 accounting
CG18853 2008-04-29 Picked prior to 5.5
CG12822 2008-08-15 Release 5.9 accounting
CG12821 2008-08-15 Release 5.9 accounting
CG12822 2008-12-18 5.12 accounting
CG12821 2008-12-18 5.12 accounting

Clone Sequence Records

GH21247.complete Sequence

1489 bp (1489 high quality bases) assembled on 2002-05-18

GenBank Submission: AY122124

> GH21247.complete
CGGTGCCGTGCGTAAGTGATGGCCAACTCTAGCTGGATGTAACCATTGAG
AATCGAGGTAAATATTGGTCAATAACAGCGGAGAACGCTGCAATTGCGGA
TTATTTGGGAGTCAAGTGCGCGTTGCCGGCAGCGAAAATGCACGAGGATG
ATCTGAAGAGTCAGTTGACCATCGCGCGGAACGAGATCAACAATCTCAGG
CAGCAAGTGCGCAACCTGCAGCATGTGCAGCGCAAGGACATTGAGACGAT
AACCCGCCTGCTGCAGGACTTCCGCTGCGAGGGGTGTGCGAACAACAACA
AAAGCGCCAAGGACAAGGTCGCCGGCGAGAAGCAGGAGCACCAGCACCAA
CAGCAGACGCAGGACCAGCAGACGGGCCAAGGTCAGAGCAATTATACCAA
TGGTGGGCACTGCTTGGGAGAGGACTACGCACACTTTCGGCCCATAGGAG
TGATCCGGACAGCATTCCCAGAGAAGCGGGCCGTGCCGAGGCAGTCAATT
GTGGGCAGTCGCCTGCGGGGTATCATCCAACTGAACGACGGTGTGTTCAC
CAATCCGGAGCACTCCTTGGAGGGACTAGAGGACTTTTCCCATCTGTGGC
TCATCTATCATTTTCACCGCAACAATTCCCACCCCAAGGCCAAGGTGGCG
CCTCCCCGTCTTGGTGGGGAGCGGGTGGGTGTGTTTTCCACACGATCTCC
ACACCGCCCGTGTCCCATTGGTCTCTCGTTGGTGGAGATTGAGAAGATCG
AGAACGCCACCATTAGTTTCTTTGGTACGGACATGGTAGACGGCACACCC
GTGTTGGACATTAAGCCCTACATTCCACACTACGATGCACCATCCTTGAG
CGTTGACTCAGGAAGAACCTCTGTTGGACCGCATGAGAGCAGCCTGGACT
TCTACGACTCCAGACAGGAGCCTGACGGAGAGGAATCGGACCTGGAACTG
TATGGAGCAGCTGGCTACAGCGGGAACGCGGGCATTGGAGCTGACGCTAT
TCTGCCGCCACCCAGCGCCGTGCGAGTGCCCAACTGGGTGGTGGCCAGCA
ATAGACTTAGCGTGACCTTTAACGAGCATGCCGAGGCGCAGTTAAAGGAG
CTGCAGGTGGAGAAGCAGTGCATCGTGGACATTCTGGAGGCGGATCCGCG
CTCCGTTTACTTGCGCACAAAATATGGCTCGCAAATATTTACCTTCCAGC
TGCGGGAGGTCACGGTGACGTGCAAATTTGATGACAAGGCCGGCACGGTG
ACTGTGGTTCAGGTCCGGCGCAACGAGAATGTCCAGGTTACCGCCCTGGA
CGGCGACCTGCGCAGCGCCTAACTTATGGATTATTGCAATTGATATTCGT
TAATTGACGATTTGTGTTAAGCTTAAGTGTATTGTGTTGAGGAGCTTTAA
CCTTTGGCGTTCAATTTTGCTCTAGAATACAGGACATTCTTAAATATATG
TATGAGGCTTGTTTCCCACGCAAAAAAAAAAAAAAAAAA

GH21247.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1472 CG12822-RB 1..1472 1..1471 7320 99.9 Plus
CG12821-RC 3474 CG12821-RC 88..1371 197..1479 6365 99.8 Plus
CG12822-RA 1526 CG12822-RA 1..862 1..862 4310 100 Plus
CG12822-RA 1526 CG12822-RA 913..1526 859..1471 3030 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3720549..3721162 859..1471 3020 99.8 Plus
chr2R 21145070 chr2R 3720021..3720498 385..862 2390 100 Plus
chr2R 21145070 chr2R 3716911..3717171 385..645 1305 100 Plus
chr2R 21145070 chr2R 3716378..3716577 1..200 1000 100 Plus
chr2R 21145070 chr2R 3719488..3719687 1..200 1000 100 Plus
chr2R 21145070 chr2R 3716664..3716853 197..386 950 100 Plus
chr2R 21145070 chr2R 3719774..3719963 197..386 950 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7833228..7833849 859..1479 3045 99.7 Plus
2R 25286936 2R 7832700..7833177 385..862 2390 100 Plus
2R 25286936 2R 7829590..7829850 385..645 1305 100 Plus
2R 25286936 2R 7832167..7832366 1..200 1000 100 Plus
2R 25286936 2R 7829057..7829256 1..200 1000 100 Plus
2R 25286936 2R 7829343..7829532 197..386 950 100 Plus
2R 25286936 2R 7832453..7832642 197..386 950 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7834427..7835048 859..1479 3055 99.6 Plus
2R 25260384 2R 7833899..7834376 385..862 2390 100 Plus
2R 25260384 2R 7830789..7831049 385..645 1305 100 Plus
2R 25260384 2R 7833366..7833565 1..200 1000 100 Plus
2R 25260384 2R 7830256..7830455 1..200 1000 100 Plus
2R 25260384 2R 7833652..7833841 197..386 950 100 Plus
2R 25260384 2R 7830542..7830731 197..386 950 100 Plus
Blast to na_te.dros performed 2019-03-16 05:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 187..370 164 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6590 335..394 117 68.3 Plus

GH21247.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:21:12 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3719488..3719686 1..199 100 -> Plus
chr2R 3719777..3719963 200..386 100 -> Plus
chr2R 3720023..3720497 387..861 100 -> Plus
chr2R 3720552..3721162 862..1471 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:22 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 138..1322 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:54 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 138..1322 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:29 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 138..1322 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:12 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 138..1322 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:09 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 138..1322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:21:24 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1472 1..1471 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:54 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1472 1..1471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:29 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1468 5..1471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:12 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1472 1..1471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:09 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1468 5..1471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:12 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832167..7832365 1..199 100 -> Plus
2R 7832456..7832642 200..386 100 -> Plus
2R 7832702..7833176 387..861 100 -> Plus
2R 7833231..7833841 862..1471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:12 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832167..7832365 1..199 100 -> Plus
2R 7832456..7832642 200..386 100 -> Plus
2R 7832702..7833176 387..861 100 -> Plus
2R 7833231..7833841 862..1471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:12 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832167..7832365 1..199 100 -> Plus
2R 7832456..7832642 200..386 100 -> Plus
2R 7832702..7833176 387..861 100 -> Plus
2R 7833231..7833841 862..1471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:29 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719672..3719870 1..199 100 -> Plus
arm_2R 3719961..3720147 200..386 100 -> Plus
arm_2R 3720207..3720681 387..861 100 -> Plus
arm_2R 3720736..3721346 862..1471 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:32 Download gff for GH21247.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7833901..7834375 387..861 100 -> Plus
2R 7834430..7835040 862..1471 99   Plus
2R 7833366..7833564 1..199 100 -> Plus
2R 7833655..7833841 200..386 100 -> Plus

GH21247.pep Sequence

Translation from 137 to 1321

> GH21247.pep
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVE
IEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGRTSVGPHE
SSLDFYDSRQEPDGEESDLELYGAAGYSGNAGIGADAILPPPSAVRVPNW
VVASNRLSVTFNEHAEAQLKELQVEKQCIVDILEADPRSVYLRTKYGSQI
FTFQLREVTVTCKFDDKAGTVTVVQVRRNENVQVTALDGDLRSA*

GH21247.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13638-PA 398 GF13638-PA 1..398 1..394 1805 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23308-PA 392 GG23308-PA 1..392 1..394 2026 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21293-PA 378 GH21293-PA 1..377 1..393 1578 76.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 394 CG12822-PB 1..394 1..394 2068 100 Plus
CG12822-PA 412 CG12822-PA 1..412 1..394 2039 95.6 Plus
CG18853-PA 330 CG18853-PA 1..213 1..203 907 83.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19783-PA 368 GI19783-PA 1..362 1..389 1543 76.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11692-PA 389 GL11692-PA 1..389 1..394 1695 82.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11834-PA 388 GA11834-PA 1..388 1..394 1704 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20986-PA 392 GM20986-PA 1..392 1..394 2049 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10513-PA 376 GD10513-PA 1..376 1..394 1769 89.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17719-PA 394 GJ17719-PA 1..394 1..394 1606 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21968-PA 381 GK21968-PA 1..379 1..389 1575 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19153-PA 392 GE19153-PA 1..392 1..394 2030 96.4 Plus

GH21247.hyp Sequence

Translation from 137 to 1321

> GH21247.hyp
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVE
IEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGRTSVGPHE
SSLDFYDSRQEPDGEESDLELYGAAGYSGNAGIGADAILPPPSAVRVPNW
VVASNRLSVTFNEHAEAQLKELQVEKQCIVDILEADPRSVYLRTKYGSQI
FTFQLREVTVTCKFDDKAGTVTVVQVRRNENVQVTALDGDLRSA*

GH21247.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 394 CG12822-PB 1..394 1..394 2068 100 Plus
CG12822-PA 412 CG12822-PA 1..412 1..394 2039 95.6 Plus
CG18853-PA 330 CG18853-PA 1..213 1..203 907 83.8 Plus