Clone GH21273 Report

Search the DGRC for GH21273

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:212
Well:73
Vector:pOT2
Associated Gene/TranscriptCG11999-RA
Protein status:GH21273.pep: gold
Preliminary Size:899
Sequenced Size:923

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11999 2002-01-01 Sim4 clustering to Release 2
CG11999 2002-05-18 Blastp of sequenced clone
CG11999 2003-01-01 Sim4 clustering to Release 3
CG11999 2008-04-29 Release 5.5 accounting
CG11999 2008-08-15 Release 5.9 accounting
CG11999 2008-12-18 5.12 accounting

Clone Sequence Records

GH21273.complete Sequence

923 bp (923 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118807

> GH21273.complete
GTCACACCAGCACCGTCAAAAATAGCAATTGTTTGCGTGTGCAACGCTGA
TTTCAACCGTAATTGCCGGTACAGATTGACTGACTTAGGTCCACGGACTA
GGATACGATAACTAGAACAGGACACGATGCAGCACATACTACTTCTTACA
GGACTGGCGCTGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAA
CGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCT
TCCGCCTGCACTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAG
TCGGTGACGGGCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGAT
CAAGGCGCAGACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCG
GATCCACCGTGCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCG
CACCACTTTTCGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGG
AACGGATGGACTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCA
ACGAGAACTGGATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACC
GGCATGTACCTGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGG
CCAAATGGAAATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGA
CCACGGCGGAGGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCAC
GACGAGTACGCCCACTCGGAGCTGTAGTGCTCCCTAAGGACCTCGACTGC
TGCAGTTTCATACTACTATTAGTTCTGTAATTTATAACTTAGTTGAATTT
TTATTGAAGACCCCAAAAGCAAACCATCAAATTAAAATTATTTAAACTCA
GGGTAAAAAAAAAAAAAAAAAAA

GH21273.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-RA 1160 CG11999-RA 168..1072 1..905 4525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1179380..1180097 904..187 3590 100 Minus
chr3R 27901430 chr3R 1180224..1180410 187..1 935 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5353716..5354434 905..187 3595 100 Minus
3R 32079331 3R 5354561..5354747 187..1 935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5094547..5095265 905..187 3595 100 Minus
3R 31820162 3R 5095392..5095578 187..1 935 100 Minus
Blast to na_te.dros performed 2019-03-15 12:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1518..1608 796..887 115 59.8 Plus

GH21273.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:30 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1179380..1180096 188..904 100 <- Minus
chr3R 1180224..1180410 1..187 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:25 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..651 127..777 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:00 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..651 127..777 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:38:22 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..651 127..777 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:08 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..651 127..777 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:53:12 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..651 127..777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:48 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..904 1..904 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:59 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..904 1..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:38:22 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..904 1..904 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:08 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..904 1..904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:12 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..904 1..904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:30 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5353717..5354433 188..904 100 <- Minus
3R 5354561..5354747 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:30 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5353717..5354433 188..904 100 <- Minus
3R 5354561..5354747 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:30 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5353717..5354433 188..904 100 <- Minus
3R 5354561..5354747 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:38:22 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1179439..1180155 188..904 100 <- Minus
arm_3R 1180283..1180469 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:33 Download gff for GH21273.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5094548..5095264 188..904 100 <- Minus
3R 5095392..5095578 1..187 100   Minus

GH21273.hyp Sequence

Translation from 126 to 776

> GH21273.hyp
MQHILLLTGLALVGSISRGAATESNVVTCGSILKLLNSDYAFRLHSHDVK
YGSGSGQQSVTGVEQKEDVNSHWVIKAQTGELCERGEPIACGSTVRLEHL
STKKNLHSHHFSSPLSGEQEVSAYGTDGLGDTGDHWEVVCSNENWMRSAH
VRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHGTRWTTAEGLFIV
PKEKSSTHDEYAHSEL*

GH21273.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-PA 216 CG11999-PA 1..216 1..216 1149 100 Plus

GH21273.pep Sequence

Translation from 126 to 776

> GH21273.pep
MQHILLLTGLALVGSISRGAATESNVVTCGSILKLLNSDYAFRLHSHDVK
YGSGSGQQSVTGVEQKEDVNSHWVIKAQTGELCERGEPIACGSTVRLEHL
STKKNLHSHHFSSPLSGEQEVSAYGTDGLGDTGDHWEVVCSNENWMRSAH
VRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHGTRWTTAEGLFIV
PKEKSSTHDEYAHSEL*

GH21273.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16060-PA 215 GF16060-PA 4..215 5..216 1029 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11066-PA 216 GG11066-PA 1..216 1..216 1108 96.8 Plus
Dere\GG12810-PA 766 GG12810-PA 339..438 44..139 156 37.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22665-PA 216 GH22665-PA 1..216 1..216 953 79.6 Plus
Dgri\GH17663-PA 749 GH17663-PA 335..434 44..139 164 40.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-PA 216 CG11999-PA 1..216 1..216 1149 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10208-PA 216 GI10208-PA 1..216 1..216 969 80.6 Plus
Dmoj\GI11129-PA 744 GI11129-PA 333..432 44..139 172 40.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22188-PA 216 GL22188-PA 1..216 1..216 995 83.3 Plus
Dper\GL26758-PA 749 GL26758-PA 337..436 44..139 170 41.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11321-PA 216 GA11321-PA 1..216 1..216 995 83.3 Plus
Dpse\GA11548-PA 749 GA11548-PA 337..436 44..139 170 41.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10645-PA 216 GM10645-PA 1..216 1..216 1122 97.7 Plus
Dsec\GM19090-PA 697 GM19090-PA 271..370 44..139 162 37.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19626-PA 216 GD19626-PA 1..216 1..216 1131 98.6 Plus
Dsim\GD16529-PA 765 GD16529-PA 339..438 44..139 162 37.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11011-PA 216 GJ11011-PA 1..216 1..216 974 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14280-PA 212 GK14280-PA 1..211 1..210 964 84.8 Plus
Dwil\GK20066-PA 734 GK20066-PA 343..442 44..139 169 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25293-PA 216 GE25293-PA 1..216 1..216 1071 93.5 Plus
Dyak\GE16638-PA 766 GE16638-PA 339..438 44..139 175 40.6 Plus