Clone GH21475 Report

Search the DGRC for GH21475

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:214
Well:75
Vector:pOT2
Associated Gene/TranscriptSpn77Bc-RA
Protein status:GH21475.pep: gold
Sequenced Size:1450

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6289 2002-12-13 Blastp of sequenced clone
CG6289 2003-01-01 Sim4 clustering to Release 3
CG6289 2008-04-29 Release 5.5 accounting
CG6289 2008-08-15 Release 5.9 accounting
CG6289 2008-12-18 5.12 accounting

Clone Sequence Records

GH21475.complete Sequence

1450 bp (1450 high quality bases) assembled on 2002-12-13

GenBank Submission: BT003298

> GH21475.complete
CACAAAGAGCCTAGTCTAGCTAAGTAAATTTGTTTGACAATATGAAGCTC
GGATTTCTGGGCCTTTTTGGCATGGTGCTCAGTTTGCGGGCCCATATATG
TGCAAATACTGTTGATACGAAGAGTCTATTACAAAAAATGACGGACGCAA
GGCTTCAATTTGCCCTCAACCTGCTGCAAATGGAATCCACGCATTTAAAC
CTGGAAAACTTTGCGATGACGCCATTTTCCACGTGGTCACTTATGATCAT
GTTCTACGAGGGAGCAGAGGGGACTACCTTGAAGCAGATACGTGATGTCC
TGGCGATCTATGTCGATTATCCAACACTGCGCAGGTGGTACGAGGATGTC
CGAGCTTATCACTATTTAAATTCGGAAAACACAAAACTGTTTTCGCTGCG
TTACGCTTACTACGACGATGTAGGAGATTTAGAACTCGTGAAAGGGTACA
ACAGTGTAGTCCTAGAAGGAGTAGGAGAAGGAAATGTGGTTCTTCGAGAG
GGTCGGCCAAGGGGTGTGGACTTCGACCAGGGGGCGAGTATAATTATCAA
CGACGATATCGACAAAGCCTCTCATGCGAAAATCTTCAGTTCTTATAGCC
GTCGTTCGTTCAATAGTACAGTAACTGTGCTGGGGATTACTGTTAGCTAC
TTTAAGGCCAAATGGAAGTATCCATTCGATAAGTCCCAGACGAAAGTGGA
ACAGTTTTACAACGCCGGCGGCTCGCCGGCAGGTAAGGTGGAGATGATGG
TGCAAACGGGGAAGTATGCCTACGTCAATAATGTAAAGGGTCTGCAAGCG
GATGTCCTGGAGCTACCTTTTGGGGAACATGAGCTAGTAATGATCGTCAT
ACTGCCGAAGCCTTCCCAGAGAGTAAGCCTGGTGCTCAAACAATTGAAGA
ACCTGGGACTACATCGCCTCCTTGAGGAACTCGAGGCCTCCAAGAATGAA
TCTGATGTAGAAGTCAAGCTTCCCAAGTTCGATACGCGATCCGTACTTTC
ACTCGAAGATACCGTATATGAGGCTGGACTAACGGATCTGAGAAATGAGT
TCGCAGATCTAGGTCGCATGCTGATTCCTACCGGGGACAGAGGTGCGTAC
CTCTCCCTCTACCACCAATTCGCCAGGATCGTCGTAGATGAAGAGGGCTT
GCCTAATGCTGTTCCGCAGAAATCTTCTGGAACAAATAACATCAAGTTCC
ATATAAACAGGCCGTTTGCATACCTTGTCCTACAAAGAACACACAAATTG
CTCATTCACTCCGGAGTCTTTCGGGAAGGTGAGATCCAGTAATGAAGATA
AGCAGAAAATACATTGGTCTTTTCTATGACAAATCACCCTAAAAACTTGT
ATGTTGTTCGTATATAATAGACAATAATAAGCAATAATTAATAATAAAAA
TATGACAACATAAATAAAGCCAAAAACTATTTAAAAAAAAAAAAAAAAAA

GH21475.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6289-RA 1370 CG6289-RA 1..1370 10..1379 6850 100 Plus
CG6663-RA 1113 CG6663-RA 64..1113 243..1292 4560 95.6 Plus
CG6663-RA 1113 CG6663-RA 1..64 18..81 260 93.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20332978..20333389 1021..1432 2045 99.8 Plus
chr3L 24539361 chr3L 20332567..20332921 667..1021 1745 99.4 Plus
chr3L 24539361 chr3L 20331774..20332130 8..364 1695 98.3 Plus
chr3L 24539361 chr3L 20310741..20311095 667..1021 1610 96.9 Plus
chr3L 24539361 chr3L 20332198..20332501 365..668 1505 99.7 Plus
chr3L 24539361 chr3L 20310372..20310675 365..668 1445 98.4 Plus
chr3L 24539361 chr3L 20311152..20311500 1021..1369 1340 92.3 Plus
chr3L 24539361 chr3L 20310183..20310304 243..364 445 91 Plus
chr3L 24539361 chr3L 20310116..20310183 14..81 280 94.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:01:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20343908..20344323 1021..1436 2080 100 Plus
3L 28110227 3L 20342704..20343060 8..364 1785 100 Plus
3L 28110227 3L 20343497..20343853 667..1023 1785 100 Plus
3L 28110227 3L 20321638..20321992 667..1021 1610 96.9 Plus
3L 28110227 3L 20343128..20343431 365..668 1520 100 Plus
3L 28110227 3L 20321269..20321572 365..668 1490 99.3 Plus
3L 28110227 3L 20322049..20322397 1021..1369 1340 92.3 Plus
3L 28110227 3L 20321080..20321201 243..364 445 91 Plus
3L 28110227 3L 20321013..20321080 14..81 280 94.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20337008..20337423 1021..1436 2080 100 Plus
3L 28103327 3L 20336597..20336953 667..1023 1785 100 Plus
3L 28103327 3L 20335804..20336160 8..364 1785 100 Plus
3L 28103327 3L 20314738..20315092 667..1021 1610 96.9 Plus
3L 28103327 3L 20336228..20336531 365..668 1520 100 Plus
3L 28103327 3L 20314369..20314672 365..668 1490 99.3 Plus
3L 28103327 3L 20315149..20315497 1021..1369 1340 92.2 Plus
3L 28103327 3L 20314180..20314301 243..364 445 90.9 Plus
3L 28103327 3L 20314113..20314180 14..81 280 94.1 Plus
Blast to na_te.dros performed on 2019-03-15 17:26:33 has no hits.

GH21475.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:27:50 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20332569..20332922 669..1022 99 -> Plus
chr3L 20331774..20332130 8..364 98 -> Plus
chr3L 20332198..20332501 365..668 99 -> Plus
chr3L 20332980..20333344 1023..1387 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:32 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
CG6289-RA 1..1251 42..1292 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:32 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 1..1251 42..1292 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:36:28 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 1..1251 42..1292 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:09 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
CG6289-RA 1..1251 42..1292 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:53 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 1..1251 42..1292 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:25 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
CG6289-RA 1..1283 10..1292 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:31 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 9..1440 1..1432 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:36:28 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 9..1440 1..1432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:09 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
CG6289-RA 1..1283 10..1292 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:53 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 9..1440 1..1432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:50 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20343499..20343852 669..1022 100 -> Plus
3L 20343910..20344319 1023..1432 100   Plus
3L 20342704..20343060 8..364 100 -> Plus
3L 20343128..20343431 365..668 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:50 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20343499..20343852 669..1022 100 -> Plus
3L 20343910..20344319 1023..1432 100   Plus
3L 20342704..20343060 8..364 100 -> Plus
3L 20343128..20343431 365..668 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:50 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20343499..20343852 669..1022 100 -> Plus
3L 20343910..20344319 1023..1432 100   Plus
3L 20342704..20343060 8..364 100 -> Plus
3L 20343128..20343431 365..668 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:28 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20335804..20336160 8..364 100 -> Plus
arm_3L 20336228..20336531 365..668 100 -> Plus
arm_3L 20336599..20336952 669..1022 100 -> Plus
arm_3L 20337010..20337419 1023..1432 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:21:50 Download gff for GH21475.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20336228..20336531 365..668 100 -> Plus
3L 20336599..20336952 669..1022 100 -> Plus
3L 20335804..20336160 8..364 100 -> Plus
3L 20337010..20337419 1023..1432 100   Plus

GH21475.pep Sequence

Translation from 41 to 1291

> GH21475.pep
MKLGFLGLFGMVLSLRAHICANTVDTKSLLQKMTDARLQFALNLLQMEST
HLNLENFAMTPFSTWSLMIMFYEGAEGTTLKQIRDVLAIYVDYPTLRRWY
EDVRAYHYLNSENTKLFSLRYAYYDDVGDLELVKGYNSVVLEGVGEGNVV
LREGRPRGVDFDQGASIIINDDIDKASHAKIFSSYSRRSFNSTVTVLGIT
VSYFKAKWKYPFDKSQTKVEQFYNAGGSPAGKVEMMVQTGKYAYVNNVKG
LQADVLELPFGEHELVMIVILPKPSQRVSLVLKQLKNLGLHRLLEELEAS
KNESDVEVKLPKFDTRSVLSLEDTVYEAGLTDLRNEFADLGRMLIPTGDR
GAYLSLYHQFARIVVDEEGLPNAVPQKSSGTNNIKFHINRPFAYLVLQRT
HKLLIHSGVFREGEIQ*

GH21475.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10328-PA 446 GF10328-PA 62..441 27..411 463 31.7 Plus
Dana\GF11691-PA 374 GF11691-PA 14..370 39..410 245 24.5 Plus
Dana\GF19634-PA 394 GF19634-PA 37..320 40..344 231 27.3 Plus
Dana\GF15866-PA 371 GF15866-PA 32..356 55..396 221 25.6 Plus
Dana\GF11762-PA 406 GF11762-PA 122..371 156..404 217 27.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16101-PA 450 GG16101-PA 79..445 40..411 474 33.2 Plus
Dere\GG21843-PA 374 GG21843-PA 14..370 39..410 228 23.2 Plus
Dere\GG23229-PA 401 GG23229-PA 6..377 35..410 207 24.3 Plus
Dere\GG23495-PA 321 GG23495-PA 6..305 55..381 205 28 Plus
Dere\GG10789-PA 381 GG10789-PA 28..368 55..404 203 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14729-PA 445 GH14729-PA 61..437 27..408 464 32.2 Plus
Dgri\GH20251-PA 377 GH20251-PA 30..370 55..410 227 23 Plus
Dgri\GH22013-PA 401 GH22013-PA 33..380 56..414 219 23.8 Plus
Dgri\GH19862-PA 382 GH19862-PA 35..374 56..404 191 23.2 Plus
Dgri\GH18614-PA 419 GH18614-PA 42..414 39..412 176 22.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Spn77Bc-PB 416 CG6289-PB 1..416 1..416 2132 100 Plus
Spn77Bc-PA 416 CG6289-PA 1..416 1..416 2132 100 Plus
Spn77Bb-PA 362 CG6663-PA 13..362 67..416 1664 92 Plus
Spn77Ba-PC 450 CG6680-PC 79..445 40..411 472 33.3 Plus
Spn77Ba-PB 450 CG6680-PB 79..445 40..411 472 33.3 Plus
Spn77Ba-PA 450 CG6680-PA 79..445 40..411 472 33.3 Plus
Spn55B-PA 374 CG10913-PA 14..370 39..410 242 23.5 Plus
Spn28Db-PB 377 CG33121-PB 5..370 22..411 219 23.8 Plus
Spn42Dc-PB 403 CG9455-PB 6..365 35..396 214 22.8 Plus
Spn42Dc-PA 403 CG9455-PA 6..365 35..396 214 22.8 Plus
Spn38F-PB 370 CG9334-PB 6..353 29..396 203 24.2 Plus
Spn28F-PA 375 CG8137-PA 6..361 29..399 202 24.1 Plus
Spn38F-PA 372 CG9334-PA 6..355 29..396 201 24.1 Plus
Spn42De-PB 386 CG9460-PB 2..380 21..405 188 23.3 Plus
Spn28Da-PB 384 CG31902-PB 168..357 199..396 183 28.8 Plus
Spn100A-PA 649 CG1342-PA 338..626 131..408 158 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13382-PA 445 GI13382-PA 64..440 30..411 479 34.5 Plus
Dmoj\GI19420-PA 376 GI19420-PA 15..370 40..410 231 22.5 Plus
Dmoj\Acp48-PA 401 GI14552-PA 55..386 59..398 208 25.6 Plus
Dmoj\GI23459-PA 419 GI23459-PA 4..414 5..412 196 23.9 Plus
Dmoj\GI19810-PA 401 GI19810-PA 35..381 56..411 194 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25131-PA 438 GL25131-PA 66..433 29..411 416 30.9 Plus
Dper\GL10534-PA 376 GL10534-PA 14..370 39..410 247 24.3 Plus
Dper\GL21686-PA 422 GL21686-PA 17..416 15..412 235 26.1 Plus
Dper\GL10964-PA 379 GL10964-PA 117..375 154..409 188 26.1 Plus
Dper\GL11126-PA 421 GL11126-PA 70..397 56..400 187 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23694-PA 448 GA23694-PA 66..443 29..411 444 31.3 Plus
Dpse\GA10637-PA 376 GA10637-PA 14..370 39..410 251 24.3 Plus
Dpse\GA24617-PA 375 GA24617-PA 34..365 55..400 210 26.6 Plus
Dpse\GA24549-PA 379 GA24549-PA 117..375 154..409 184 26.1 Plus
Dpse\GA26905-PA 417 GA26905-PA 53..402 39..396 172 22.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22274-PA 374 GM22274-PA 1..374 44..416 1336 67.3 Plus
Dsec\GM22276-PA 235 GM22276-PA 1..235 1..233 1085 86 Plus
Dsec\GM22277-PA 150 GM22277-PA 1..150 267..416 663 85.3 Plus
Dsec\GM22272-PA 450 GM22272-PA 79..445 40..411 473 33.1 Plus
Dsec\GM21844-PA 374 GM21844-PA 14..370 39..410 233 23.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14875-PA 416 GD14875-PA 1..415 1..415 1926 86 Plus
Dsim\GD14874-PA 324 GD14874-PA 1..278 44..321 950 65.4 Plus
Dsim\GD14873-PA 450 GD14873-PA 79..445 40..411 473 33.1 Plus
Dsim\GD11338-PA 374 GD11338-PA 14..370 39..410 233 23.5 Plus
Dsim\GD22457-PA 348 GD22457-PA 9..341 56..411 224 25.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11505-PA 445 GJ11505-PA 64..440 30..411 464 32.2 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 15..370 40..410 234 23.5 Plus
Dvir\GJ10214-PA 391 GJ10214-PA 30..386 55..412 182 23.3 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 122..376 154..410 173 24.4 Plus
Dvir\GJ23351-PA 348 GJ23351-PA 80..328 159..404 153 22.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16950-PA 444 GK16950-PA 51..439 12..411 515 33.8 Plus
Dwil\GK16951-PA 412 GK16951-PA 29..404 21..408 449 31.6 Plus
Dwil\GK22245-PA 374 GK22245-PA 30..370 55..410 220 23.4 Plus
Dwil\GK13977-PA 615 GK13977-PA 226..609 39..412 207 22.4 Plus
Dwil\GK20758-PA 404 GK20758-PA 6..387 7..399 205 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19662-PA 436 GE19662-PA 1..436 1..416 1043 50.7 Plus
Dyak\GE19661-PA 439 GE19661-PA 38..434 4..411 488 32.5 Plus
Dyak\GE19664-PA 450 GE19664-PA 49..445 4..411 486 32.3 Plus
Dyak\GE19665-PA 290 GE19665-PA 1..200 1..209 346 36.8 Plus
Dyak\GE19665-PA 290 GE19665-PA 178..290 309..416 234 44.8 Plus
Dyak\GE11922-PA 374 GE11922-PA 14..370 39..410 227 23.2 Plus

GH21475.hyp Sequence

Translation from 41 to 1291

> GH21475.hyp
MKLGFLGLFGMVLSLRAHICANTVDTKSLLQKMTDARLQFALNLLQMEST
HLNLENFAMTPFSTWSLMIMFYEGAEGTTLKQIRDVLAIYVDYPTLRRWY
EDVRAYHYLNSENTKLFSLRYAYYDDVGDLELVKGYNSVVLEGVGEGNVV
LREGRPRGVDFDQGASIIINDDIDKASHAKIFSSYSRRSFNSTVTVLGIT
VSYFKAKWKYPFDKSQTKVEQFYNAGGSPAGKVEMMVQTGKYAYVNNVKG
LQADVLELPFGEHELVMIVILPKPSQRVSLVLKQLKNLGLHRLLEELEAS
KNESDVEVKLPKFDTRSVLSLEDTVYEAGLTDLRNEFADLGRMLIPTGDR
GAYLSLYHQFARIVVDEEGLPNAVPQKSSGTNNIKFHINRPFAYLVLQRT
HKLLIHSGVFREGEIQ*

GH21475.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Spn77Bc-PB 416 CG6289-PB 1..416 1..416 2132 100 Plus
Spn77Bc-PA 416 CG6289-PA 1..416 1..416 2132 100 Plus
Spn77Bb-PA 362 CG6663-PA 13..362 67..416 1664 92 Plus
Spn77Ba-PC 450 CG6680-PC 79..445 40..411 472 33.3 Plus
Spn77Ba-PB 450 CG6680-PB 79..445 40..411 472 33.3 Plus