Clone GH21622 Report

Search the DGRC for GH21622

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:216
Well:22
Vector:pOT2
Associated Gene/TranscriptCG6652-RA
Protein status:GH21622.pep: gold
Preliminary Size:2190
Sequenced Size:2113

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6652 2001-09-19 Blastp of sequenced clone
CG6652 2003-01-01 Sim4 clustering to Release 3
CG6652 2008-04-29 Release 5.5 accounting
CG6652 2008-08-15 Release 5.9 accounting
CG6652 2008-12-18 5.12 accounting

Clone Sequence Records

GH21622.complete Sequence

2113 bp assembled on 2006-11-09

GenBank Submission: AY058436

> GH21622.complete
TGGCCTCCGAAAATTATTAGCTTTCTCGAGCTAACCCAGTGACAATCCTC
CGGAGCAGCGGCAGGACCTTAGATGGTATCGCCGCGCAAGCTGGCATCGT
CCTACGGCCCAAGAGTATCCCAATCGGAACCGAACAATCTGATGGCAGCG
TCGGCAAAGAGCTGTGAGAGCCTATTCTCGGCCAGCTCCCGGGAGTCGGC
CAGCCTGATCTACCAGCGCAGCAAGCCGCCACCGCCCCAACAACGTGGCG
GCGTGAAGGGTTCCGGCAGTATGAGCTCCCAGAACCACAGCGAGATCCAT
CAGCGCGTCATGTCCGCGAGGAATCTGCGCGCCAAGACCTTCCAGAACCA
ACTGGCCGATGCCCAGGCGGAGATTGCCAATCTGGCGCACGAGAATCGCA
TGCTGCGCACGCTTCACAATCGCCAGTCATCGGCGCTGAATAAGTACGAG
GCCCACAACGCTGAGCTGCCCAAGTTGCTAAGCTCACATGCCGAGGAGCT
GCGCATGTGGCAGACCAAGTACCGCAAACTGCAGGCTGCGAACAAGGCTC
TGGAGCTAAAGCTCAAGCAGAAGGAGGAAATCATCCTGACGCTGAGCGAT
CAGAACAAGCACTACAGTCAGCTCAACAAGGATAAGAATCTCGACGAGCG
GCAAAAGCTTCAGGAGAAGTTAAAATCCCTGGAGCAGCGTCTGGAGGAGA
AGGACAACGACATGAAACTGATGGCCCGCAAGGTGCAGCTGGAGTCGAAG
AACATCCGCCAGCAACTGCTCAACGAGCAAAGGAAGGGCAAGGAGGTGAT
GCTGAAGCTGGAGAAGGCCAAGCTGGAGATCAGTGGATACCGCAAGCTGG
AGGAGTACACTCTCGGCACTGACAAGGTGAATCCCCTGTCCTCCGGTCGA
CGAACCAAACTGAGTGGCGTCACCGATGAGCCGGACAAGATCGACAAGTT
GGAGAAGTCAATGGAGATGCTGGACAAGGCCATCGAGAAGAACAACCAGA
GCGAATTCACGGCCTTGACGGATGTGATGGAGTCGGAATCGTTCTACGAT
TTCGAAAAGGACAGTGCCGAAGACAAGAGTGGACCCAACACTCCACCTAG
TCAAATCGAACGACAGGTGGGCGGGCGCGGCGGTAAGCTTATCCTGCCGC
CCGCCACGAACCATGCTAAGATGGGACAGAAAGCCAATCGGTCCACTTTG
AGCCAAGTGCTCTCGGCCCAGGGAAAGATTTCGGTATCTTCTGGAAAATC
TGCTAAATCACGCATTGCCGTTGCAGTGCCGAAGATGGAAAGTGTCCAGG
TTAGCAAGCGTCGCGAACCGGAGACCGTGTCCAGACTGGCTTCCGCCGAA
ACCAAGCCCAAGCAGAAGCCTCTGGAGTACGAGTACGAGGACGACTATGA
GCCGGCTGGCGAAGATGGTGATGACGACGCCTACGGCATGATGAGCAAGA
TGTGCGAGGGAGAGGAACCACAGGACAACAGCGAAGAGAATGCCAACGAA
AGCAGTCTATTGAAATACTCCGCATACATGGATAACAAGAGTAGCGAGGG
CGATCCCCTAGAGGAATCAATGGAGGAGTACGACGGAACTGATGGTCAAC
AATCGCAGGGCAGCGACGATGAGGACATTAGTGTACGTGCTCCGCGTCTG
AAGGAGAACATGTCCAGCCTGCGCAAGCAGATCTCGAATGATTTCAAGGA
GCGCGAGAGCTTCCTGAAGACGTTCTGTCGCCAGGCCAGTAATAGCAATA
TGCGCGACGATTCCGCGTCGAAGAAGAGGAACAGCATCGCGACCGGAGCG
GCGGCCAGTAGCCACATGACCGGCAGTCGCAAGAATGCCCTTTTGGCCGC
TCTAAAGACGATCGACGACAACAAGAGCCAGGACTAGAGTGCACTGCAAT
AGTTTCCACCCATGTCCAGTTCAAGTTAGTCCTTAAGCGGTGTTGAGTTA
TATATATATTTTTCAAGCTGAGGCCCGTGTGCCCGGCGCAGCTGGAGCAG
TTGCATCAGTGGCTTGGCGAAGATGGATCGAATCAAGCCCTTGATGCAGT
TGCTCCAGCGCCGGTCGCACAGTCGTTGATTAAATTTTAATATAAAAAAA
AAAAAAAAAAAAA

GH21622.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6652-RA 2380 CG6652-RA 214..2309 1..2096 10480 100 Plus
CG6652-RB 2144 CG6652-RB 1013..2142 967..2096 5650 100 Plus
CG6652.a 2150 CG6652.a 1022..2145 973..2096 5620 100 Plus
CG6652.a 2150 CG6652.a 152..1028 1..877 4385 100 Plus
CG6652-RB 2144 CG6652-RB 152..1012 1..861 4305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17010322..17011084 1624..862 3740 99.3 Minus
chr3L 24539361 chr3L 17011440..17011929 636..147 2420 99.6 Minus
chr3L 24539361 chr3L 17009786..17010257 2093..1622 2300 99.2 Minus
chr3L 24539361 chr3L 17011138..17011363 861..636 1130 100 Minus
chr3L 24539361 chr3L 17012003..17012148 146..1 730 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17020884..17021646 1624..862 3815 100 Minus
3L 28110227 3L 17021997..17022486 636..147 2450 100 Minus
3L 28110227 3L 17020345..17020819 2096..1622 2375 100 Minus
3L 28110227 3L 17021700..17021925 861..636 1130 100 Minus
3L 28110227 3L 17022560..17022705 146..1 730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17013984..17014746 1624..862 3815 100 Minus
3L 28103327 3L 17015097..17015586 636..147 2450 100 Minus
3L 28103327 3L 17013445..17013919 2096..1622 2375 100 Minus
3L 28103327 3L 17014800..17015025 861..636 1130 100 Minus
3L 28103327 3L 17015660..17015805 146..1 730 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:09:53 has no hits.

GH21622.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:11:06 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17009786..17010255 1624..2093 99 <- Minus
chr3L 17010323..17011084 862..1623 99 <- Minus
chr3L 17011138..17011363 636..861 100 <- Minus
chr3L 17011441..17011929 147..635 99 <- Minus
chr3L 17012003..17012148 1..146 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:40 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 1..1815 73..1887 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:59 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 1..1815 73..1887 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:58:28 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 1..1815 73..1887 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:36:51 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 1..1815 73..1887 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:23:24 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 1..1815 73..1887 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:48:18 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 152..2244 1..2093 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:59 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 152..2244 1..2093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:58:28 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 152..2244 1..2093 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:36:51 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 152..2244 1..2093 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:23:24 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
CG6652-RA 152..2244 1..2093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:06 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17020348..17020817 1624..2093 100 <- Minus
3L 17020885..17021646 862..1623 100 <- Minus
3L 17021700..17021925 636..861 100 <- Minus
3L 17021998..17022486 147..635 100 <- Minus
3L 17022560..17022705 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:06 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17020348..17020817 1624..2093 100 <- Minus
3L 17020885..17021646 862..1623 100 <- Minus
3L 17021700..17021925 636..861 100 <- Minus
3L 17021998..17022486 147..635 100 <- Minus
3L 17022560..17022705 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:06 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17020348..17020817 1624..2093 100 <- Minus
3L 17020885..17021646 862..1623 100 <- Minus
3L 17021700..17021925 636..861 100 <- Minus
3L 17021998..17022486 147..635 100 <- Minus
3L 17022560..17022705 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:58:28 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17014800..17015025 636..861 100 <- Minus
arm_3L 17013448..17013917 1624..2093 100 <- Minus
arm_3L 17013985..17014746 862..1623 100 <- Minus
arm_3L 17015098..17015586 147..635 100 <- Minus
arm_3L 17015660..17015805 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:49:09 Download gff for GH21622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17013448..17013917 1624..2093 100 <- Minus
3L 17013985..17014746 862..1623 100 <- Minus
3L 17014800..17015025 636..861 100 <- Minus
3L 17015098..17015586 147..635 100 <- Minus
3L 17015660..17015805 1..146 100   Minus

GH21622.pep Sequence

Translation from 72 to 1886

> GH21622.pep
MVSPRKLASSYGPRVSQSEPNNLMAASAKSCESLFSASSRESASLIYQRS
KPPPPQQRGGVKGSGSMSSQNHSEIHQRVMSARNLRAKTFQNQLADAQAE
IANLAHENRMLRTLHNRQSSALNKYEAHNAELPKLLSSHAEELRMWQTKY
RKLQAANKALELKLKQKEEIILTLSDQNKHYSQLNKDKNLDERQKLQEKL
KSLEQRLEEKDNDMKLMARKVQLESKNIRQQLLNEQRKGKEVMLKLEKAK
LEISGYRKLEEYTLGTDKVNPLSSGRRTKLSGVTDEPDKIDKLEKSMEML
DKAIEKNNQSEFTALTDVMESESFYDFEKDSAEDKSGPNTPPSQIERQVG
GRGGKLILPPATNHAKMGQKANRSTLSQVLSAQGKISVSSGKSAKSRIAV
AVPKMESVQVSKRREPETVSRLASAETKPKQKPLEYEYEDDYEPAGEDGD
DDAYGMMSKMCEGEEPQDNSEENANESSLLKYSAYMDNKSSEGDPLEESM
EEYDGTDGQQSQGSDDEDISVRAPRLKENMSSLRKQISNDFKERESFLKT
FCRQASNSNMRDDSASKKRNSIATGAAASSHMTGSRKNALLAALKTIDDN
KSQD*

GH21622.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10489-PA 618 GF10489-PA 1..618 1..604 2350 75.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15835-PA 606 GG15835-PA 1..606 1..604 2697 86.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17057-PA 623 GH17057-PA 1..622 1..603 1400 52.9 Plus
Dgri\GH23486-PA 87 GH23486-PA 1..86 526..603 194 57 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6652-PA 604 CG6652-PA 1..604 1..604 3033 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12062-PA 626 GI12062-PA 1..626 1..604 1381 52.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16066-PA 561 GL16066-PA 1..561 24..604 1673 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19753-PA 598 GA19753-PA 1..598 24..604 1894 66.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24354-PA 354 GM24354-PA 1..275 1..276 1335 94.2 Plus
Dsec\GM24354-PA 354 GM24354-PA 258..354 500..604 412 79.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12431-PA 76 GD12431-PA 1..76 530..604 336 89.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13333-PA 591 GJ13333-PA 1..591 24..604 1468 56.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20432-PA 621 GK20432-PA 1..621 1..604 1607 58.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22175-PA 607 GE22175-PA 1..607 1..604 2784 87.7 Plus

GH21622.hyp Sequence

Translation from 72 to 1886

> GH21622.hyp
MVSPRKLASSYGPRVSQSEPNNLMAASAKSCESLFSASSRESASLIYQRS
KPPPPQQRGGVKGSGSMSSQNHSEIHQRVMSARNLRAKTFQNQLADAQAE
IANLAHENRMLRTLHNRQSSALNKYEAHNAELPKLLSSHAEELRMWQTKY
RKLQAANKALELKLKQKEEIILTLSDQNKHYSQLNKDKNLDERQKLQEKL
KSLEQRLEEKDNDMKLMARKVQLESKNIRQQLLNEQRKGKEVMLKLEKAK
LEISGYRKLEEYTLGTDKVNPLSSGRRTKLSGVTDEPDKIDKLEKSMEML
DKAIEKNNQSEFTALTDVMESESFYDFEKDSAEDKSGPNTPPSQIERQVG
GRGGKLILPPATNHAKMGQKANRSTLSQVLSAQGKISVSSGKSAKSRIAV
AVPKMESVQVSKRREPETVSRLASAETKPKQKPLEYEYEDDYEPAGEDGD
DDAYGMMSKMCEGEEPQDNSEENANESSLLKYSAYMDNKSSEGDPLEESM
EEYDGTDGQQSQGSDDEDISVRAPRLKENMSSLRKQISNDFKERESFLKT
FCRQASNSNMRDDSASKKRNSIATGAAASSHMTGSRKNALLAALKTIDDN
KSQD*

GH21622.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6652-PA 604 CG6652-PA 1..604 1..604 3033 100 Plus