Clone GH21710 Report

Search the DGRC for GH21710

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:217
Well:10
Vector:pOT2
Associated Gene/TranscriptCG6833-RA
Protein status:GH21710.pep: gold
Preliminary Size:1317
Sequenced Size:1210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6833 2001-01-01 Release 2 assignment
CG6833 2003-01-01 Sim4 clustering to Release 3
CG6833 2003-02-17 Blastp of sequenced clone
CG6833 2008-04-29 Release 5.5 accounting
CG6833 2008-08-15 Release 5.9 accounting
CG6833 2008-12-18 5.12 accounting

Clone Sequence Records

GH21710.complete Sequence

1210 bp (1210 high quality bases) assembled on 2003-02-17

GenBank Submission: AY060760

> GH21710.complete
TTATTCGAGATTGTCTTAAGCTGGATATTTATTTGGAATATATAGATGCC
CCGACGCCATGTCCGCTACGCCACGCCAGAAGCAGTTCGACATGAATCGT
AGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCCAACAACAA
AAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACACAATCAAC
GCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGGTGAACACA
AGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGCGGTGGAGC
AGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGACGGAGTCAG
CACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGGCACACCGC
AATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGACACAACAC
ACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCATGGGACACG
TGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCGACTACCGC
ACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGTGAGGACTT
TGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCGCATTCTGG
TGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCCGCCATCCG
TTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGCAAACTCAT
CTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGCCGTTCTGG
GTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATGCACGTGCC
GCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAAGTATCTGGA
GAAGAAGCGGCATCAACAGCAGCACTATTAGCAGCTCACTCGGGGAGCCC
CATTGCACTGAGGGGTGTTCCATTACGGTAGTCTTAAATTTTTAAGTATA
CACACGGGTTTCATTCACGTGAAACTGTTGCTTAAATGTATAAAATGTTA
CAACCTTAGCCATAGTTCTTTCTTGAAGGCATCGGAGCGGTTTTCAGCAC
GTAATGTGCCACTCAAAAGCAGGCTCGGATCTCATGATGAAACCATTTTT
ATGTTTACACATTCTTTTGTTTAATATCGGAAAGCTAAAATTAAAAAAAA
AAAAAAAAAA

GH21710.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-RA 1230 CG6833-RA 39..1230 1..1192 5960 100 Plus
CG6833.a 1261 CG6833.a 69..1220 45..1196 5760 100 Plus
CG13484-RA 646 CG13484-RA 607..646 1196..1157 200 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14041383..14042574 1..1192 5915 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14051278..14052473 1..1196 5980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14044378..14045573 1..1196 5980 100 Plus
Blast to na_te.dros performed 2019-03-15 15:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1100 893..935 125 76.7 Plus

GH21710.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:32:07 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14041383..14042574 1..1192 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:47 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 1..873 59..931 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:11 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RB 1..873 59..931 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:31:30 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 1..873 59..931 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:26 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 1..873 59..931 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:08:53 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 1..873 59..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:09 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 39..1230 1..1192 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:10 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 68..1259 1..1192 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:30 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 73..1264 1..1192 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:26 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 50..1241 1..1192 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:08:53 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
CG6833-RA 73..1264 1..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:07 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14051278..14052469 1..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:07 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14051278..14052469 1..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:07 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14051278..14052469 1..1192 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:30 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14044378..14045569 1..1192 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:57 Download gff for GH21710.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14044378..14045569 1..1192 100   Plus

GH21710.hyp Sequence

Translation from 58 to 930

> GH21710.hyp
MSATPRQKQFDMNRSRANNLDSSRSGSANNKNTTDSTKNVVSPQHNQRKL
QASMERLQVQQVNTSRRAAGSNWMAAAGGGAAAAAGSENQDAKATESAPL
SKSARMRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLL
DKYVKPRKEVTDYRTSVSGIRPQDIANGEDFAAVQNEVMKLIHGRILVGH
GLRNDLAVLGIRHPFHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQE
IQTGEHNSVEDARAAMGIYNRVAVDWEKYLEKKRHQQQHY*

GH21710.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-PB 290 CG6833-PB 1..290 1..290 1492 100 Plus
CG6833-PA 290 CG6833-PA 1..290 1..290 1492 100 Plus
CG42666-PK 742 CG42666-PK 575..723 117..266 203 35.9 Plus
CG42666-PI 742 CG42666-PI 575..723 117..266 203 35.9 Plus
CG42666-PH 742 CG42666-PH 575..723 117..266 203 35.9 Plus

GH21710.pep Sequence

Translation from 58 to 930

> GH21710.pep
MSATPRQKQFDMNRSRANNLDSSRSGSANNKNTTDSTKNVVSPQHNQRKL
QASMERLQVQQVNTSRRAAGSNWMAAAGGGAAAAAGSENQDAKATESAPL
SKSARMRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLL
DKYVKPRKEVTDYRTSVSGIRPQDIANGEDFAAVQNEVMKLIHGRILVGH
GLRNDLAVLGIRHPFHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQE
IQTGEHNSVEDARAAMGIYNRVAVDWEKYLEKKRHQQQHY*

GH21710.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24592-PA 305 GF24592-PA 1..305 1..290 1084 70.4 Plus
Dana\GF21199-PA 834 GF21199-PA 652..814 105..266 220 36.5 Plus
Dana\GF12217-PA 1246 GF12217-PA 1073..1213 136..269 172 34 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15670-PA 289 GG15670-PA 1..289 1..290 1299 87.9 Plus
Dere\GG12883-PA 773 GG12883-PA 606..754 117..266 221 37.2 Plus
Dere\GG23399-PA 1240 GG23399-PA 1067..1207 136..269 175 34.7 Plus
Dere\GG15351-PA 677 GG15351-PA 352..508 113..271 166 32.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15107-PA 263 GH15107-PA 15..251 47..278 870 68.9 Plus
Dgri\GH17667-PA 273 GH17667-PA 105..256 117..268 205 35.8 Plus
Dgri\GH15165-PA 698 GH15165-PA 343..534 101..284 179 31 Plus
Dgri\GH23112-PA 1242 GH23112-PA 1069..1209 136..269 165 34.7 Plus
Dgri\GH16553-PA 962 GH16553-PA 804..952 117..268 164 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6833-PB 290 CG6833-PB 1..290 1..290 1492 100 Plus
CG6833-PA 290 CG6833-PA 1..290 1..290 1492 100 Plus
prage-PK 742 CG42666-PK 575..723 117..266 203 35.9 Plus
prage-PI 742 CG42666-PI 575..723 117..266 203 35.9 Plus
prage-PH 742 CG42666-PH 575..723 117..266 203 35.9 Plus
prage-PG 742 CG42666-PG 575..723 117..266 203 35.9 Plus
prage-PD 742 CG42666-PD 575..723 117..266 203 35.9 Plus
prage-PF 761 CG42666-PF 594..742 117..266 203 35.9 Plus
prage-PA 761 CG42666-PA 594..742 117..266 203 35.9 Plus
prage-PC 761 CG42666-PC 594..742 117..266 203 35.9 Plus
prage-PB 787 CG42666-PB 620..768 117..266 203 35.9 Plus
prage-PJ 852 CG42666-PJ 685..833 117..266 203 35.9 Plus
prage-PE 852 CG42666-PE 685..833 117..266 203 35.9 Plus
CG12877-PC 991 CG12877-PC 833..979 117..266 153 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13758-PA 275 GI13758-PA 1..275 1..284 982 67.6 Plus
Dmoj\GI11131-PA 902 GI11131-PA 727..883 114..266 217 38.2 Plus
Dmoj\GI18935-PA 1238 GI18935-PA 1065..1205 136..269 170 34.7 Plus
Dmoj\GI22024-PA 988 GI22024-PA 830..978 117..268 162 34.2 Plus
Dmoj\GI12104-PA 686 GI12104-PA 350..505 114..271 157 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25291-PA 278 GL25291-PA 3..278 2..290 968 65.7 Plus
Dper\GL26761-PA 822 GL26761-PA 624..805 80..268 213 34.7 Plus
Dper\GL11682-PA 736 GL11682-PA 500..703 90..269 190 30.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19891-PA 278 GA19891-PA 3..278 2..290 975 66 Plus
Dpse\GA13257-PA 817 GA13257-PA 619..800 80..268 209 34.2 Plus
Dpse\GA20915-PA 1237 GA20915-PA 1001..1204 90..269 178 30.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25450-PA 290 GM25450-PA 1..290 1..290 1284 86.6 Plus
Dsec\GM19170-PA 745 GM19170-PA 578..726 117..266 220 37.2 Plus
Dsec\GM21079-PA 1241 GM21079-PA 1068..1202 136..263 164 35.5 Plus
Dsec\GM14791-PA 681 GM14791-PA 352..508 113..271 153 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14476-PA 290 GD14476-PA 1..290 1..290 1315 88.3 Plus
Dsim\GD13963-PA 681 GD13963-PA 352..508 113..271 153 30.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13749-PA 275 GJ13749-PA 1..273 1..285 984 67.9 Plus
Dvir\GJ19056-PA 879 GJ19056-PA 710..859 117..266 209 36.2 Plus
Dvir\GJ21307-PA 1248 GJ21307-PA 990..1215 25..269 170 28.3 Plus
Dvir\GJ10473-PA 971 GJ10473-PA 813..961 117..268 162 32.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17035-PA 297 GK17035-PA 5..281 2..282 935 67.6 Plus
Dwil\GK20067-PA 798 GK20067-PA 631..780 117..268 210 35 Plus
Dwil\GK10644-PA 1242 GK10644-PA 1069..1209 136..269 173 34.7 Plus
Dwil\GK11769-PA 995 GK11769-PA 837..985 117..268 159 33.1 Plus
Dwil\GK12547-PA 693 GK12547-PA 368..520 114..268 158 32.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21999-PA 289 GE21999-PA 1..289 1..290 1238 88.6 Plus
Dyak\GE16711-PA 764 GE16711-PA 597..745 117..266 213 36.5 Plus
Dyak\GE19240-PA 1241 GE19240-PA 1068..1208 136..269 176 35.4 Plus
Dyak\GE21570-PA 677 GE21570-PA 351..508 112..271 157 31.3 Plus