BDGP Sequence Production Resources |
Search the DGRC for GH21817
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 218 |
Well: | 17 |
Vector: | pOT2 |
Associated Gene/Transcript | CG5270-RA |
Protein status: | GH21817.pep: validated not full length |
Preliminary Size: | 3914 |
Sequenced Size: | 3394 |
Gene | Date | Evidence |
---|---|---|
CG5270 | 2001-01-01 | Release 2 assignment |
CG5270 | 2001-07-04 | Blastp of sequenced clone |
CG5270 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5270 | 2008-04-29 | Release 5.5 accounting |
CG5270 | 2008-08-15 | Release 5.9 accounting |
CG5270 | 2008-12-18 | 5.12 accounting |
3394 bp (3394 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051570
> GH21817.complete GAACTATCAGCTATCCCTTGAATTCCTACGACAAATGGATACCAACGAGC GATCTCCGTTTTGGAAGCTAATCCGTCATCCTTTGCTCATCGTAGAGCAG TTAGTGATGAATGCTCGCTTTGAATTGCTGGGAAAGCTACTAGATGCGGC TCGTTCCAAGTTGCTAAAGGAGAGACCACTTGGACCATGTCCGTACTGTT TTGACAAAACGGGCCATGTCTATGATGTCCAGTCCAGTGCTGGTTTAGGA AGTGGAGCGGGAGAAACACCGGCAAAGATACGTTTTCAACTGGGACAAAC AACATCCGAGGCTTTTATTCTGCTCAACTTCAATTCCTACCAGCAGGATC ACTTTGTGGGTCAGGATTGTTTGGACCTATTACTGCGAATTTACGCCAGC AAAGCTCTGGACTACCATGTGGCGAATGTGCGTGCTGCTTCTGAGCCCAG TTCTCTTGGCACAGATGTACATAATTCACTGGACTCTCTTTGTGGTGCCT TCGTGATGCCCAAGCAAGCACCCAACCGACAGCAGTGGACGCGGGACGAG GAGGCCAGCCACTGCATGTGCTGTCGCCGAGCAGCATTCACTATGTTGAT GCGGAGACATCATTGCCGTAGGTGCGGGCGGGTGGTATGCTACGCCTGCT CCACCCATCGAATACGCATCCCAGAGCTTTACGACGAGTTGGAGGTGCGG ATCTGCAACGATTGTGCAGCGTGCAGCACGCCTGCCAAGGATCAAGGTGA TGGCACTTCTAGTGAGCGGAGTGCTATCTCGGGACAAGTATCAAAATCTT CTGGACGGAGTGATTCCTGCAAATGGCAGTTGAGTGGGATTATTACACAC GATAAACTGCTGCGCGAGGAGTTCTCCTATGAACACGCGCCCAGTGTGGC CCTCAGTTTGTCCATACTTCGCAATCATGTCGAGCAGCGCAGTTGCGTTG ATTTGCTGCTCTTCCACTGTCGCAAACTGGAAAAGCTAATTGTGCCCAAT CCAGAGGTGGACTACGGTTTGGTGGCCAAGATGATAAACTGTCTGGCTTT CGCCGCAAAAGTTCGTGGCGCACCAGGAGAGCTGGAAAACATTCGTGAGC ACTCGGAAATTATAATGGCAGTGGTTCAGCAGGGCTGTGAGTCGCTGATC CCAACTGGACCGCTCAATAACCACAATCTGCGCAAGCTGGCTGACGCTTT GGTGGAAGCGGAGCACTGGACTCTAGCTCTGGAAGTGCATCTGAAGTGTG GTTTCGCCACCACCGGCGTAATGGCGGCCCACGGACTAGCCTGCCTTCGT GCTGGTTGCTATGATGCAGCCCGAGAAAAGTTTGCGCACTGCATGACTCG CCTCTCAAGTGAGCAGCTCAATAGCAGCATCTGTAAGAACATTTTCGGAG TGGCTTCTACGGAGGCAGTGCTCTTGCCCAGAAAGCGACCACAGCGCGGA CCGGCACTGCTTCAAGAAATCCTACAGTTGATAGCCGCCATTCCTCAAGT TCAAACCCAACCGGAGACCCTTCACCGAGCCTCACTTATTCGTAGTTCGA ATACTTCTCTGGCCTCACTTTTCACACGACGTCGGGAGCCCTACGTTCAG CCACGTCCGCTCCAGGAACCGGCTTTGAACATCATGAACGCGCTGGCAGG ACTCAAGAACCTAGCCAAGGGACAGTATGGTGGCCAAATGCCAACTAGCG AGGAAAGTCGCCGGCAGGAGCGTGGCTTCGAGGAATCACTGCACTATGTG CTTACCTATGGGAGTCACGCCGATATTCTCACCTTTCTGATGCGCCGCGA AGAGCTGCGGGCAGCACTTCGCTACTGGCAGCACCAGCAGTTGGACGCGG ATCTCTTTATCCATCACATATTCTACCCGCAGCTGGCCAACGGCGGCCTA AACGTTTTGATGGACGAACTGCAGCAGCTGGACGACGCTCAATTCACTGC CTGGCGTCTGCCACTACTGCAGACCTGTCGACATCTGGAGCAGCAGCAGC AACTCAGTTCGCTGTACCAACTGCAGCTGCTGCTAAAGGATCCCATCCGG GCCAGCATGACGTGCGTGAAGTTCTACGCCTTGCAGTGCGAGAACTTTCA GAAGCTGCATGCCAACGCCCAGCACTTGCTGTCTGCCCTCAGGCATCTTC AGGGTGAACTGGATATGGCGGAATGGGAGCACCTGCAGCGGCAGCAGGCT CGCAGAAACAGCGTGAGTAGCACAGCAAGCGTTCGAGGTGCCTGCTTCGC CATGCAAATGGATGCCAGGGCTCTCAATGGACACATCAATACCATCCGGC GACAGTTGGAAGTGGCTAAGTTCTTGGACAAGTGTGAGCGAGAACAGCCG CCAGATGAGCCACTACGAACTATACAAACTCTGAAGCAGATTCGACTAGA GTCCAGTCGAGGAACTCTACCTACTCTGTTCGAAGGCGCCGCAGATCGGA TACAAATTTGCATTCTGATCCTCATGTGCGGTAAGAACATAGACGAAGGT TTTGGCCTGGCTTACGGCATTATGCAGGACTTCAAGCTGGCTGCACTTAA GGTGTTTGGAGCCACTGCTAAGTACCTGTCGAGAAATCAGCGCTTGGGTG AGGTAGAGCGTCTGCTGGACTGCATAGGAAGCAACAACGGCGGAGACATT TCCACGGAGTCCGATGAAATACTCTCGATTGCCATTAATGCTGCTGTGCA CAGCAGTGCGCCGGAGACGAAACAGATGCTGGATCGGTTGATCAAACGCA TCGGCAGCGTGGAGCTACGAGTCTCCTCCTACATCTACATTGGGCAGCTT AAATCCGCCTATCTGCTGGCCAACAAGCACGATCGATTGGCGGATATCCG GCGAATCCTGCGGCAGGCGGAGCTTACCGGTCAGGTTCACATCAAGAAAC TGTGCGATATGAAGCTCCAGCTAAGCGCCGCGCCAACGCCTCTGTGATAT CCCAACCCTCGAGCAATAACACATTAGTAACCCCTTGTTTCTGGGATTTA CTAGCTGTGAGAAATACCAAATGATGAATTTGTAGCTTTGAAAACTCCTG CATTCTAAAAGACAATAACATATCTAAGCAAATTCTCAATTTTGAGATTT AGATGAATATATATTATTCGGAATTGGAATTCATCTTTTGATTATTCACC TAGTGAAGGCCCAAGTTGTTTTGTAACTGAGCTAGCATAGATAATTTGTT TTTAGAATTTAACATATATGTAGATCAATTTTAATCTTTCCAAAGGGCCA GCAAGTATTCCACCCTCCAGCTCAAAAAGACTCTCCCAGCATGTAACCAA ATTATATTATTGATTGTACTGTATTTTATATTTATTATGTTATTTTTATA TTATACTGTTATATGTTTATTACCCAGAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7253262..7254333 | 1318..2389 | 5360 | 100 | Plus |
chr3R | 27901430 | chr3R | 7251830..7252892 | 1..1063 | 5300 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 7254579..7255439 | 2517..3377 | 4305 | 100 | Plus |
chr3R | 27901430 | chr3R | 7252950..7253208 | 1061..1319 | 1295 | 100 | Plus |
chr3R | 27901430 | chr3R | 7254393..7254522 | 2388..2517 | 635 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11427792..11428863 | 1318..2389 | 5360 | 100 | Plus |
3R | 32079331 | 3R | 11426360..11427422 | 1..1063 | 5315 | 100 | Plus |
3R | 32079331 | 3R | 11429109..11429973 | 2517..3381 | 4325 | 100 | Plus |
3R | 32079331 | 3R | 11427480..11427738 | 1061..1319 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 11428923..11429052 | 2388..2517 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11168623..11169694 | 1318..2389 | 5360 | 100 | Plus |
3R | 31820162 | 3R | 11167191..11168253 | 1..1063 | 5315 | 100 | Plus |
3R | 31820162 | 3R | 11169940..11170804 | 2517..3381 | 4325 | 100 | Plus |
3R | 31820162 | 3R | 11168311..11168569 | 1061..1319 | 1295 | 100 | Plus |
3R | 31820162 | 3R | 11169754..11169883 | 2388..2517 | 650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7251830..7252889 | 1..1060 | 99 | -> | Plus |
chr3R | 7252950..7253208 | 1061..1319 | 100 | -> | Plus |
chr3R | 7253264..7254333 | 1320..2389 | 100 | -> | Plus |
chr3R | 7254395..7254522 | 2390..2517 | 99 | -> | Plus |
chr3R | 7254580..7255362 | 2518..3300 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 3786..6732 | 1..2947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 3786..6732 | 1..2947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 3786..6732 | 1..2947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 3786..6732 | 1..2947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 3786..6732 | 1..2947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RA | 1..3377 | 1..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 4089..7465 | 1..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 4089..7465 | 1..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RA | 1..3377 | 1..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5270-RB | 4089..7465 | 1..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11426360..11427419 | 1..1060 | 100 | -> | Plus |
3R | 11427480..11427738 | 1061..1319 | 100 | -> | Plus |
3R | 11427794..11428863 | 1320..2389 | 100 | -> | Plus |
3R | 11428925..11429052 | 2390..2517 | 100 | -> | Plus |
3R | 11429110..11429969 | 2518..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11426360..11427419 | 1..1060 | 100 | -> | Plus |
3R | 11427480..11427738 | 1061..1319 | 100 | -> | Plus |
3R | 11427794..11428863 | 1320..2389 | 100 | -> | Plus |
3R | 11428925..11429052 | 2390..2517 | 100 | -> | Plus |
3R | 11429110..11429969 | 2518..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11426360..11427419 | 1..1060 | 100 | -> | Plus |
3R | 11427480..11427738 | 1061..1319 | 100 | -> | Plus |
3R | 11427794..11428863 | 1320..2389 | 100 | -> | Plus |
3R | 11428925..11429052 | 2390..2517 | 100 | -> | Plus |
3R | 11429110..11429969 | 2518..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7252082..7253141 | 1..1060 | 100 | -> | Plus |
arm_3R | 7253202..7253460 | 1061..1319 | 100 | -> | Plus |
arm_3R | 7253516..7254585 | 1320..2389 | 100 | -> | Plus |
arm_3R | 7254647..7254774 | 2390..2517 | 100 | -> | Plus |
arm_3R | 7254832..7255691 | 2518..3377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11167191..11168250 | 1..1060 | 100 | -> | Plus |
3R | 11168311..11168569 | 1061..1319 | 100 | -> | Plus |
3R | 11168625..11169694 | 1320..2389 | 100 | -> | Plus |
3R | 11169756..11169883 | 2390..2517 | 100 | -> | Plus |
3R | 11169941..11170800 | 2518..3377 | 100 | Plus |
Translation from 0 to 2946
> GH21817.hyp NYQLSLEFLRQMDTNERSPFWKLIRHPLLIVEQLVMNARFELLGKLLDAA RSKLLKERPLGPCPYCFDKTGHVYDVQSSAGLGSGAGETPAKIRFQLGQT TSEAFILLNFNSYQQDHFVGQDCLDLLLRIYASKALDYHVANVRAASEPS SLGTDVHNSLDSLCGAFVMPKQAPNRQQWTRDEEASHCMCCRRAAFTMLM RRHHCRRCGRVVCYACSTHRIRIPELYDELEVRICNDCAACSTPAKDQGD GTSSERSAISGQVSKSSGRSDSCKWQLSGIITHDKLLREEFSYEHAPSVA LSLSILRNHVEQRSCVDLLLFHCRKLEKLIVPNPEVDYGLVAKMINCLAF AAKVRGAPGELENIREHSEIIMAVVQQGCESLIPTGPLNNHNLRKLADAL VEAEHWTLALEVHLKCGFATTGVMAAHGLACLRAGCYDAAREKFAHCMTR LSSEQLNSSICKNIFGVASTEAVLLPRKRPQRGPALLQEILQLIAAIPQV QTQPETLHRASLIRSSNTSLASLFTRRREPYVQPRPLQEPALNIMNALAG LKNLAKGQYGGQMPTSEESRRQERGFEESLHYVLTYGSHADILTFLMRRE ELRAALRYWQHQQLDADLFIHHIFYPQLANGGLNVLMDELQQLDDAQFTA WRLPLLQTCRHLEQQQQLSSLYQLQLLLKDPIRASMTCVKFYALQCENFQ KLHANAQHLLSALRHLQGELDMAEWEHLQRQQARRNSVSSTASVRGACFA MQMDARALNGHINTIRRQLEVAKFLDKCEREQPPDEPLRTIQTLKQIRLE SSRGTLPTLFEGAADRIQICILILMCGKNIDEGFGLAYGIMQDFKLAALK VFGATAKYLSRNQRLGEVERLLDCIGSNNGGDISTESDEILSIAINAAVH SSAPETKQMLDRLIKRIGSVELRVSSYIYIGQLKSAYLLANKHDRLADIR RILRQAELTGQVHIKKLCDMKLQLSAAPTPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5270-PB | 2243 | CG5270-PB | 1263..2243 | 1..981 | 5079 | 100 | Plus |
rush-PB | 316 | CG14782-PB | 149..207 | 179..238 | 158 | 43.3 | Plus |
rush-PA | 316 | CG14782-PA | 149..207 | 179..238 | 158 | 43.3 | Plus |
Translation from 34 to 2946
> GH21817.pep MDTNERSPFWKLIRHPLLIVEQLVMNARFELLGKLLDAARSKLLKERPLG PCPYCFDKTGHVYDVQSSAGLGSGAGETPAKIRFQLGQTTSEAFILLNFN SYQQDHFVGQDCLDLLLRIYASKALDYHVANVRAASEPSSLGTDVHNSLD SLCGAFVMPKQAPNRQQWTRDEEASHCMCCRRAAFTMLMRRHHCRRCGRV VCYACSTHRIRIPELYDELEVRICNDCAACSTPAKDQGDGTSSERSAISG QVSKSSGRSDSCKWQLSGIITHDKLLREEFSYEHAPSVALSLSILRNHVE QRSCVDLLLFHCRKLEKLIVPNPEVDYGLVAKMINCLAFAAKVRGAPGEL ENIREHSEIIMAVVQQGCESLIPTGPLNNHNLRKLADALVEAEHWTLALE VHLKCGFATTGVMAAHGLACLRAGCYDAAREKFAHCMTRLSSEQLNSSIC KNIFGVASTEAVLLPRKRPQRGPALLQEILQLIAAIPQVQTQPETLHRAS LIRSSNTSLASLFTRRREPYVQPRPLQEPALNIMNALAGLKNLAKGQYGG QMPTSEESRRQERGFEESLHYVLTYGSHADILTFLMRREELRAALRYWQH QQLDADLFIHHIFYPQLANGGLNVLMDELQQLDDAQFTAWRLPLLQTCRH LEQQQQLSSLYQLQLLLKDPIRASMTCVKFYALQCENFQKLHANAQHLLS ALRHLQGELDMAEWEHLQRQQARRNSVSSTASVRGACFAMQMDARALNGH INTIRRQLEVAKFLDKCEREQPPDEPLRTIQTLKQIRLESSRGTLPTLFE GAADRIQICILILMCGKNIDEGFGLAYGIMQDFKLAALKVFGATAKYLSR NQRLGEVERLLDCIGSNNGGDISTESDEILSIAINAAVHSSAPETKQMLD RLIKRIGSVELRVSSYIYIGQLKSAYLLANKHDRLADIRRILRQAELTGQ VHIKKLCDMKLQLSAAPTPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16864-PA | 2233 | GF16864-PA | 1273..2233 | 1..970 | 4234 | 82.8 | Plus |
Dana\GF20914-PA | 325 | GF20914-PA | 103..241 | 88..259 | 165 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18134-PA | 2242 | GG18134-PA | 1274..2242 | 1..970 | 4813 | 95.4 | Plus |
Dere\GG12863-PA | 327 | GG12863-PA | 103..207 | 88..227 | 160 | 26.1 | Plus |
Dere\GG22114-PA | 1349 | GG22114-PA | 535..592 | 168..227 | 160 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21878-PA | 2277 | GH21878-PA | 1298..2277 | 1..970 | 3673 | 72 | Plus |
Dgri\GH17951-PA | 321 | GH17951-PA | 103..207 | 88..227 | 166 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5270-PB | 2243 | CG5270-PB | 1274..2243 | 1..970 | 5024 | 100 | Plus |
rush-PB | 316 | CG14782-PB | 149..207 | 168..227 | 158 | 43.3 | Plus |
rush-PA | 316 | CG14782-PA | 149..207 | 168..227 | 158 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22700-PA | 2227 | GI22700-PA | 1250..2227 | 1..970 | 3559 | 70.5 | Plus |
Dmoj\GI16489-PA | 328 | GI16489-PA | 149..255 | 168..274 | 178 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18532-PA | 2256 | GL18532-PA | 1274..2241 | 1..968 | 3993 | 79.3 | Plus |
Dper\GL16978-PA | 1352 | GL16978-PA | 538..627 | 168..259 | 164 | 37 | Plus |
Dper\GL14261-PA | 310 | GL14261-PA | 103..252 | 88..279 | 161 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25676-PA | 2256 | GA25676-PA | 1274..2241 | 1..968 | 3992 | 79.2 | Plus |
Dpse\GA13242-PA | 310 | GA13242-PA | 103..252 | 88..279 | 161 | 26.5 | Plus |
Dpse\GA13882-PB | 1310 | GA13882-PB | 496..623 | 168..296 | 161 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23943-PA | 2244 | GM23943-PA | 1275..2244 | 1..970 | 5087 | 97.2 | Plus |
Dsec\GM19146-PA | 316 | GM19146-PA | 103..207 | 88..227 | 162 | 26.1 | Plus |
Dsec\GM15837-PA | 1345 | GM15837-PA | 530..587 | 168..227 | 160 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18753-PA | 813 | GD18753-PA | 1..813 | 158..970 | 4260 | 97.9 | Plus |
Dsim\GD11597-PA | 1345 | GD11597-PA | 530..587 | 168..227 | 160 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23428-PA | 2280 | GJ23428-PA | 1300..2280 | 1..970 | 3623 | 72.8 | Plus |
Dvir\GJ16034-PA | 298 | GJ16034-PA | 103..241 | 88..259 | 167 | 26.1 | Plus |