Clone GH21853 Report

Search the DGRC for GH21853

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:218
Well:53
Vector:pOT2
Associated Gene/TranscriptBsg-RG
Protein status:GH21853.pep: validated full length
Preliminary Size:1666
Sequenced Size:1512

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31605 2001-07-04 Blastp of sequenced clone
Bsg 2008-04-29 Release 5.5 accounting
Bsg 2008-08-15 Release 5.9 accounting
Bsg 2008-12-18 5.12 accounting

Clone Sequence Records

GH21853.complete Sequence

1512 bp (1512 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051571

> GH21853.complete
CTTTACACGAGCGTGGCTGGAGCAGCAGCAACAACAACAACAGTTGCCCC
ACCAGTCGCACAAGCTGCACAAGTCGCATTTGGGCTACGGAAATGCCAGC
CTGTCCGGGTCTCAGCCCTGGCATCCGTCAGCCGGCGGTGGCGGTATCCA
CCGCGTTTACTCGGCCACACCGCCCGATTTTCCACCTCCGCGCCTTAATC
TGCTGGAGCAGACGGTGGCGCCGCCAGAGCCACCGACCATACTGTACAAT
CCCAATCCGACGCATCCCACTGCCAGCGCCACTGCCACGGAGACCAGCGT
GCTCCTGACGACGGCGCACCACCATGCCCACCATCAGCAGCAGCTGCAGC
AGCAGTCGCAACACACGCTGAACGCCTTCCAGCTGCCACTGCCGCCGCGA
CCCAATCCCGGCCAGAATGAGCGATACCAGACCTATGCACCGCACTATGT
GCCACCAGTGGTGGTATCGGGAGCGGGCGCGGGCGCAGGCGCGGACCCGG
GAGCAGGAGCATCAGGAGAGCAGACCACCATTTCAGCAGCCACCAGCACA
AGGGCCATGATGGGTGGCGGTGGTGGCGTTGCTGGTGCGGGCTTTTCCGC
GGGCGCCAGTGGCCCAATGCTGGGTGCTGGCGGTCACATGCTGATGGGTG
GCCAGGGGCATCAGGTGCATCTGCAGCACCAGACGCTCTTGCCCGTCAAG
ATGGATAAGCTGGTGCCAAACTATGATAATGCCGAGCATCAAATGAAATT
TTACGACATCAGATCGCCGCTCGTTCTCAGCTGCAACGTGAAAGACGGTA
CGCCGGGCGGCGTGCTCATATGGAAAAAGAACGGCACCGCTGTGACGGAT
GTACCTTCTCTCAGAGGTCGCTTTAAGTTAATCGCAGACGAGAACAAGTT
CATCATCGATAAGACGGATACGAACGACGATGGCAAATACAGTTGCGAGT
TTGACGGCGTGTCCAAGGAAATCGAAGTAATTGCCCGCGTTGTTGTACGA
GTGCCTTCAAATACAGCCGTTGTGGAGGGTGAAAAGATGTCGGTGACCTG
CAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGCCAATGTAA
CGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGACGATAATGGT
GTTCCTAACGCCATTCTGACACTGGATAATGTGACATTGGACGACAGAGG
CGAATACAAATGCATTGGACGAAATGCGGCCAATGTCTACGGTGGGAACA
CCACCACTCCTGCCAGCGACGTCACAACTGTGCGTGTTAAGGGCAAATTT
GCCGCCTTGTGGCCTTTCCTGGGCATCTGTGCTGAGGTGCTGATTCTGTG
CATCATCATTCTCATTTATGAGAAGCGACGCAACAAGAGCGAACTGGAGG
AGAGTGATACTGATCCCCAAGAACAGAAAAAGAAAAGGAGAAATTATGAT
TAAAATTCCTAAGTAAAAGAAAGAACACACCGTATAAAAAAAAAAAAAAA
AAAAAAAAAAAA

GH21853.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg-RG 2528 Bsg-RG 913..2410 1..1498 7460 99.8 Plus
Bsg.ax 8112 Bsg.ax 913..2410 1..1498 7460 99.8 Plus
Bsg.h 2482 Bsg.h 1..905 522..1426 4525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8101834..8102537 1..704 3505 99.9 Plus
chr2L 23010047 chr2L 8106270..8106481 1091..1302 1015 98.6 Plus
chr2L 23010047 chr2L 8105872..8106033 822..983 810 100 Plus
chr2L 23010047 chr2L 8106780..8106914 1292..1426 675 100 Plus
chr2L 23010047 chr2L 8104725..8104844 704..823 600 100 Plus
chr2L 23010047 chr2L 8106098..8106206 983..1091 545 100 Plus
chr2L 23010047 chr2L 8109514..8109573 1426..1485 300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8102800..8103503 1..704 3520 100 Plus
2L 23513712 2L 8107237..8107448 1091..1302 1030 99.1 Plus
2L 23513712 2L 8106839..8107000 822..983 810 100 Plus
2L 23513712 2L 8107747..8107881 1292..1426 675 100 Plus
2L 23513712 2L 8105691..8105810 704..823 600 100 Plus
2L 23513712 2L 8107065..8107173 983..1091 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8102800..8103503 1..704 3520 100 Plus
2L 23513712 2L 8107237..8107448 1091..1302 1030 99 Plus
2L 23513712 2L 8106839..8107000 822..983 810 100 Plus
2L 23513712 2L 8107747..8107881 1292..1426 675 100 Plus
2L 23513712 2L 8105691..8105810 704..823 600 100 Plus
2L 23513712 2L 8107065..8107173 983..1091 545 100 Plus
2L 23513712 2L 8110481..8110553 1426..1498 335 97.2 Plus
Blast to na_te.dros performed 2019-03-16 17:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6883 20..73 153 75.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6830 21..73 141 75.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6783 21..69 137 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6804 21..69 137 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6858 5..69 129 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2510 17..73 123 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1558..1602 21..63 121 77.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2377 17..69 121 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2806..2854 21..69 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1585 23..69 118 72.3 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3621..3677 1419..1477 118 71.2 Plus

GH21853.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:04 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8106271..8106471 1092..1292 99 -> Plus
chr2L 8106781..8106913 1293..1425 100 -> Plus
chr2L 8109514..8109573 1426..1485 100   Plus
chr2L 8101834..8102537 1..704 99 -> Plus
chr2L 8104726..8104843 705..822 100 -> Plus
chr2L 8105873..8106033 823..983 100 -> Plus
chr2L 8106099..8106206 984..1091 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:51:54 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 495..1947 1..1453 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:32 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 495..1947 1..1453 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:33 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 495..1947 1..1453 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:26 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 495..1947 1..1453 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:31 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 495..1947 1..1453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:40 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 913..2397 1..1485 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:32 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 913..2397 1..1485 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:33 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 978..2462 1..1485 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:26 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 913..2397 1..1485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:31 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RG 978..2462 1..1485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:04 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8102800..8103503 1..704 100 -> Plus
2L 8105692..8105809 705..822 100 -> Plus
2L 8106840..8107000 823..983 100 -> Plus
2L 8107066..8107173 984..1091 100 -> Plus
2L 8107238..8107438 1092..1292 100 -> Plus
2L 8107748..8107880 1293..1425 100 -> Plus
2L 8110481..8110540 1426..1485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:04 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8102800..8103503 1..704 100 -> Plus
2L 8105692..8105809 705..822 100 -> Plus
2L 8106840..8107000 823..983 100 -> Plus
2L 8107066..8107173 984..1091 100 -> Plus
2L 8107238..8107438 1092..1292 100 -> Plus
2L 8107748..8107880 1293..1425 100 -> Plus
2L 8110481..8110540 1426..1485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:04 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8102800..8103503 1..704 100 -> Plus
2L 8105692..8105809 705..822 100 -> Plus
2L 8106840..8107000 823..983 100 -> Plus
2L 8107066..8107173 984..1091 100 -> Plus
2L 8107238..8107438 1092..1292 100 -> Plus
2L 8107748..8107880 1293..1425 100 -> Plus
2L 8110481..8110540 1426..1485 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:33 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8102800..8103503 1..704 100 -> Plus
arm_2L 8105692..8105809 705..822 100 -> Plus
arm_2L 8106840..8107000 823..983 100 -> Plus
arm_2L 8107066..8107173 984..1091 100 -> Plus
arm_2L 8107238..8107438 1092..1292 100 -> Plus
arm_2L 8107748..8107880 1293..1425 100 -> Plus
arm_2L 8110481..8110540 1426..1485 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:13 Download gff for GH21853.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8102800..8103503 1..704 100 -> Plus
2L 8105692..8105809 705..822 100 -> Plus
2L 8106840..8107000 823..983 100 -> Plus
2L 8107066..8107173 984..1091 100 -> Plus
2L 8107238..8107438 1092..1292 100 -> Plus
2L 8107748..8107880 1293..1425 100 -> Plus
2L 8110481..8110540 1426..1485 100   Plus

GH21853.hyp Sequence

Translation from 0 to 1452

> GH21853.hyp
FTRAWLEQQQQQQQLPHQSHKLHKSHLGYGNASLSGSQPWHPSAGGGGIH
RVYSATPPDFPPPRLNLLEQTVAPPEPPTILYNPNPTHPTASATATETSV
LLTTAHHHAHHQQQLQQQSQHTLNAFQLPLPPRPNPGQNERYQTYAPHYV
PPVVVSGAGAGAGADPGAGASGEQTTISAATSTRAMMGGGGGVAGAGFSA
GASGPMLGAGGHMLMGGQGHQVHLQHQTLLPVKMDKLVPNYDNAEHQMKF
YDIRSPLVLSCNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKF
IIDKTDTNDDGKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTC
SVVGTKPELTWTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRG
EYKCIGRNAANVYGGNTTTPASDVTTVRVKGKFAALWPFLGICAEVLILC
IIILIYEKRRNKSELEESDTDPQEQKKKRRNYD*

GH21853.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg-PG 648 CG31605-PG 166..648 1..483 2572 100 Plus
Bsg-PB 265 CG31605-PB 24..265 234..475 1262 99.6 Plus
Bsg-PH 265 CG31605-PH 24..265 234..475 1262 99.6 Plus
Bsg-PF 265 CG31605-PF 24..265 234..475 1262 99.6 Plus
Bsg-PA 265 CG31605-PA 24..265 234..475 1262 99.6 Plus

GH21853.pep Sequence

Translation from 556 to 1452

> GH21853.pep
MMGGGGGVAGAGFSAGASGPMLGAGGHMLMGGQGHQVHLQHQTLLPVKMD
KLVPNYDNAEHQMKFYDIRSPLVLSCNVKDGTPGGVLIWKKNGTAVTDVP
SLRGRFKLIADENKFIIDKTDTNDDGKYSCEFDGVSKEIEVIARVVVRVP
SNTAVVEGEKMSVTCSVVGTKPELTWTFANVTLTNATDRFILKPDDNGVP
NAILTLDNVTLDDRGEYKCIGRNAANVYGGNTTTPASDVTTVRVKGKFAA
LWPFLGICAEVLILCIIILIYEKRRNKSELEESDTDPQEQKKKRRNYD*

GH21853.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14758-PA 270 GF14758-PA 24..270 49..298 992 74.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10513-PA 640 GG10513-PA 347..640 1..298 1526 95.3 Plus
Dere\GG18558-PA 874 GG18558-PA 157..311 73..227 155 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11616-PA 648 GH11616-PA 395..648 40..290 864 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg-PG 648 CG31605-PG 351..648 1..298 1566 100 Plus
Bsg-PB 265 CG31605-PB 24..265 49..290 1262 99.6 Plus
Bsg-PH 265 CG31605-PH 24..265 49..290 1262 99.6 Plus
Bsg-PF 265 CG31605-PF 24..265 49..290 1262 99.6 Plus
Bsg-PA 265 CG31605-PA 24..265 49..290 1262 99.6 Plus
Bsg-PI 265 CG31605-PI 24..265 49..290 1262 99.6 Plus
Bsg-PC 265 CG31605-PC 24..265 49..290 1262 99.6 Plus
Bsg-PD 265 CG31605-PD 24..265 49..290 1262 99.6 Plus
Bsg-PE 265 CG31605-PE 24..265 49..290 1262 99.6 Plus
Bsg-PJ 266 CG31605-PJ 24..264 49..289 1257 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17919-PA 272 GI17919-PA 24..272 49..298 924 73.3 Plus
Dmoj\GI16146-PA 858 GI16146-PA 133..328 64..265 167 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24757-PA 271 GL24757-PA 24..271 49..298 940 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16333-PA 261 GA16333-PA 24..261 49..290 909 77.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16732-PA 650 GM16732-PA 353..650 1..298 1551 96.3 Plus
Dsec\GM12701-PA 888 GM12701-PA 171..325 73..227 149 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23503-PA 493 GD23503-PA 323..493 120..290 888 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17691-PA 655 GJ17691-PA 406..655 40..290 913 71.4 Plus
Dvir\GJ20377-PA 84 GJ20377-PA 2..84 206..290 320 83.5 Plus
Dvir\GJ16423-PA 855 GJ16423-PA 139..325 73..265 149 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15320-PA 264 GK15320-PA 27..264 51..290 978 76.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18733-PA 651 GE18733-PA 375..651 21..298 1236 88.8 Plus
Dyak\GE16870-PA 873 GE16870-PA 156..310 73..227 160 29.5 Plus