Clone GH21948 Report

Search the DGRC for GH21948

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:219
Well:48
Vector:pOT2
Associated Gene/TranscriptCG3793-RA
Protein status:GH21948.pep: gold
Preliminary Size:1591
Sequenced Size:1588

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3793 2001-01-01 Release 2 assignment
CG3793 2001-07-04 Blastp of sequenced clone
CG3793 2003-01-01 Sim4 clustering to Release 3
CG3793 2008-04-29 Release 5.5 accounting
CG3793 2008-08-15 Release 5.9 accounting
CG3793 2008-12-18 5.12 accounting

Clone Sequence Records

GH21948.complete Sequence

1588 bp (1588 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051573

> GH21948.complete
ATCGGTTCCTGCAGCTGTTTTCAAGCGAGAAAAAATTCGGAACAAGAAAA
CAAGGATTCTGGAACTTGTGCTCGCCGCAGGAGCTGATTGTAAATAAGGA
TCCAAGTGGAAACCGCCGAGTACACCAGTCGCAGAGCCATGGAGCCGCCA
GCGTCGGCCGGAATCGCCGGCTCGACGCACAAGTTCCATCCGTGCGACGA
GGCTGTGATAGCCACCAACGACGATGCCAGCGATTGCAAGCGATGTGCGG
TGCGCTTGGGCTACTGGAAGGACGACTACATCGGGTACTTTGTGCGCAAC
CAAGAGCGCAAGGCGCCGGAGATCAATCGCGGCTACTTTGCCCGTGTCAA
GGGCGTGGAGATGTGCGTCGAGAAGTTTCTAAAGAAAACCTCGGGCAACT
GCCAGATCATCAATTTGGGCTGCGGCTTCGACACACTCTACTTCCGGCTG
AGGGACACCGCCCACCAGGTGAAGAACTTCATTGAGCTGGACTTCCCCAC
GGTCACCGCCCGCAAGTGCTACACAATTAAGCGCAACAAGGCCCTGCTGG
CCAGGATTCACGACGAGGATGGTGAGGTGCGGCTCAGTCCCACGGATCTG
CATGGACCAAGCTACCACCTGATGGGCGTTGACCTGCGCAACCTCGACGA
GGTGGACAGCAAGCTGCAGCAGGCAGAAGTTGATTACTCCCTGCCCACCA
TATTTCTCGCCGAGTGCGTTCTGGTCTATATCGAGGCGCAAAACTGCCGT
AACCTGCTCAAATGGATTGCGCAAAAGTTCCAAGCAGCCGTCTTTGTCAA
CTACGAACAGGTCAACATGAACGACCGTTTCGGCGATGTGATGCTCAACA
ATCTGCGCGGACGCGGCTGCAGCCTGGCCGGCGTTGAATCCTGCTTGTCG
CTGGATACGCAGAGGAACCGCTTCAAGGACAGCGGCTGGACTGGCGCCCG
CGCCTGGGACATGGTCCAGGTGTACGAGAGCATCTCGGCGGCCGAGAGGC
AGCGAATCGAGCGGCTGGAAATGCTGGACGAGGGTGAACTGCTGCTCCAG
CTTTTCCAGCACTACTGCCTGGTGGTCGCCTGGCTGGGCGTGGCCTTTCA
GGATATAGATATCACCGTCGAAGAGTTAATGTCCTCGCTGAACATTGACT
AGGAGTGAGTGAAGGTGGAAGGGATAGAGAGCCAACCTACTTGGATGCAC
TATTTATTGACTCTGCTCGGTTTGGAGGAAGGCCATGCCAAAATATTTTG
CTTCTCAACGTGTTAACCTAAACAGCAAGTAATTAAAGAGAAACCATCGA
AATCAAAACATGTTTAGATATTTATCCTACACAGAGACCCACTCACAAAT
GATCTAATTTGTATTAATTTAGTTGTTCCTTATATTTTTTTCTCTTGTTA
CATTTTTATTATTTAATCGCTTAATATTTACTATTTTATCACCGAGTTGT
GGCACAAAATATTGATAGGTGATCAATATGCCATTCATTCATTCCCCAAT
TTAAGTGTGCGTTTAAATTGTAAATGTATTTTGAAATTATTAAAAAAAAA
ACCAACTTAAATGCAAAAAAAAAAAAAAAAAAAAAAAA

GH21948.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3793-RA 1607 CG3793-RA 39..1607 1..1569 7845 100 Plus
CG3793.a 1589 CG3793.a 9..1123 1..1115 5575 100 Plus
CG3793.a 1589 CG3793.a 1136..1589 1116..1569 2270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15764396..15764846 1116..1564 2190 99.6 Plus
chr2L 23010047 chr2L 15763502..15763938 383..819 2125 99.1 Plus
chr2L 23010047 chr2L 15762958..15763342 1..384 1845 99.2 Plus
chr2L 23010047 chr2L 15763991..15764298 808..1115 1540 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15765675..15766128 1116..1569 2270 100 Plus
2L 23513712 2L 15764781..15765217 383..819 2155 99.5 Plus
2L 23513712 2L 15764238..15764621 1..384 1920 100 Plus
2L 23513712 2L 15765270..15765577 808..1115 1540 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15765675..15766128 1116..1569 2270 100 Plus
2L 23513712 2L 15764781..15765217 383..819 2155 99.5 Plus
2L 23513712 2L 15764238..15764621 1..384 1920 100 Plus
2L 23513712 2L 15765270..15765577 808..1115 1540 100 Plus
2L 23513712 2L 15766462..15766519 1490..1546 175 89.6 Plus
Blast to na_te.dros performed 2019-03-16 01:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1059..1150 1348..1441 147 69.8 Plus
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 808..946 1353..1503 130 61.8 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 130..209 1445..1365 124 68.2 Minus
Dvir\Helena 691 Dvir\Helena DV26847 691bp Derived from U26847 (Rel. 63, Last updated, Version 2). 589..689 1468..1368 118 57.4 Minus
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 4687..4724 1417..1380 118 78.9 Minus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 149..213 1440..1376 117 68.2 Minus
BS 5142 BS BS 5142bp 5095..5139 1417..1373 117 73.3 Minus
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 520..556 390..426 113 78.4 Plus

GH21948.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:45:58 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15762958..15763342 1..384 99 -> Plus
chr2L 15763504..15763929 385..810 99 -> Plus
chr2L 15763994..15764298 811..1115 100 -> Plus
chr2L 15764396..15764846 1116..1564 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:04 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 1..1014 139..1152 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:36 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 1..1014 139..1152 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:09 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 1..1014 139..1152 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:30 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 1..1014 139..1152 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:40:59 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 1..1014 139..1152 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:45 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 9..1572 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:36 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 9..1572 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:09 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 19..1582 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:30 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 9..1572 1..1564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:40:59 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
CG3793-RA 19..1582 1..1564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:58 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15764238..15764621 1..384 100 -> Plus
2L 15764783..15765208 385..810 100 -> Plus
2L 15765273..15765577 811..1115 100 -> Plus
2L 15765675..15766123 1116..1564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:58 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15764238..15764621 1..384 100 -> Plus
2L 15764783..15765208 385..810 100 -> Plus
2L 15765273..15765577 811..1115 100 -> Plus
2L 15765675..15766123 1116..1564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:45:58 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15764238..15764621 1..384 100 -> Plus
2L 15764783..15765208 385..810 100 -> Plus
2L 15765273..15765577 811..1115 100 -> Plus
2L 15765675..15766123 1116..1564 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:09 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15764238..15764621 1..384 100 -> Plus
arm_2L 15764783..15765208 385..810 100 -> Plus
arm_2L 15765273..15765577 811..1115 100 -> Plus
arm_2L 15765675..15766123 1116..1564 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:17 Download gff for GH21948.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15764238..15764621 1..384 100 -> Plus
2L 15764783..15765208 385..810 100 -> Plus
2L 15765273..15765577 811..1115 100 -> Plus
2L 15765675..15766123 1116..1564 100   Plus

GH21948.pep Sequence

Translation from 138 to 1151

> GH21948.pep
MEPPASAGIAGSTHKFHPCDEAVIATNDDASDCKRCAVRLGYWKDDYIGY
FVRNQERKAPEINRGYFARVKGVEMCVEKFLKKTSGNCQIINLGCGFDTL
YFRLRDTAHQVKNFIELDFPTVTARKCYTIKRNKALLARIHDEDGEVRLS
PTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEA
QNCRNLLKWIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVE
SCLSLDTQRNRFKDSGWTGARAWDMVQVYESISAAERQRIERLEMLDEGE
LLLQLFQHYCLVVAWLGVAFQDIDITVEELMSSLNID*

GH21948.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14921-PA 344 GF14921-PA 1..344 1..337 1762 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25173-PA 337 GG25173-PA 1..337 1..337 1818 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13430-PA 340 GH13430-PA 1..340 1..337 1687 92.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3793-PA 337 CG3793-PA 1..337 1..337 1783 100 Plus
CG3793-PB 341 CG3793-PB 1..341 1..337 1768 98.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13964-PA 340 GI13964-PA 1..340 1..337 1701 92.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15459-PA 341 GL15459-PA 1..341 1..337 1740 93.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17689-PA 341 GA17689-PA 1..341 1..337 1740 93.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16139-PA 337 GM16139-PA 1..337 1..337 1818 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24020-PA 337 GD24020-PA 1..337 1..337 1812 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18234-PA 340 GJ18234-PA 1..340 1..337 1700 92.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24762-PA 343 GK24762-PA 1..343 1..337 1721 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21133-PA 337 GE21133-PA 1..337 1..337 1818 100 Plus

GH21948.hyp Sequence

Translation from 138 to 1151

> GH21948.hyp
MEPPASAGIAGSTHKFHPCDEAVIATNDDASDCKRCAVRLGYWKDDYIGY
FVRNQERKAPEINRGYFARVKGVEMCVEKFLKKTSGNCQIINLGCGFDTL
YFRLRDTAHQVKNFIELDFPTVTARKCYTIKRNKALLARIHDEDGEVRLS
PTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEA
QNCRNLLKWIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVE
SCLSLDTQRNRFKDSGWTGARAWDMVQVYESISAAERQRIERLEMLDEGE
LLLQLFQHYCLVVAWLGVAFQDIDITVEELMSSLNID*

GH21948.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3793-PA 337 CG3793-PA 1..337 1..337 1783 100 Plus
CG3793-PB 341 CG3793-PB 1..341 1..337 1768 98.8 Plus