Clone GH21972 Report

Search the DGRC for GH21972

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:219
Well:72
Vector:pOT2
Associated Gene/TranscriptCG7616-RA
Protein status:GH21972.pep: gold
Sequenced Size:2070

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7616 2008-04-29 Release 5.5 accounting
CG7616 2008-04-29 Picked prior to 5.5
CG7616 2008-08-15 Release 5.9 accounting
CG7616 2008-12-18 5.12 accounting

Clone Sequence Records

GH21972.complete Sequence

2070 bp assembled on 2008-01-15

GenBank Submission: BT031348

> GH21972.complete
GTGTCCAAAGAGTAAACATTGGGTGAACTTTGCAGCGGGCGGACAGAAAA
TGCGACCTCTCCAGCGTGTGCGGCAGTTGCTGAGCCTCGGAACACGGATT
CGAGGCAAAAGAGCACTCAATGGCCTGCGAGAGGCGAATGTCCAGAAAGG
CGGTCGTCCTGTATTGCGATTTAGTCTTTTGGCAGCCGGCGCAGGTGGCC
TGGCTTACGATGGGATAGTAAATGACTTCACCTACTGCGGCGCCTCCGTG
CGATTTGTACGATCCTTAAAAACAGCCGGATTGATAGCCGCTGACTATCT
GCGGCTGGACGAGAACGATCCGGAGTACGAAACAAAGGTGAAGCTGCTCC
ACAAGAAGAGTGCCGAGCGTCTGCTGGAGACGTGCCTGCTCAACGGCGGT
CTGTACATCAAGGTGGGCCAGGGATTCGCGGCCATCAATGACATTCTGCC
CGTGGAATACACCAGCACGCTGTCCCTGCTGCAGGATAGATGTCTGCCCA
CCACTCAAGCTGATGTTCAGAAGGTCTTTCGCAAGGATTTTGGCCAGTTG
CCCGAGGAGATATACCAGGAGTTCGACTATCAGCCCGTGGCGGCCGCCAG
CTTGGCGCAGGTTTTCAAAGCCAGGCTGCCCAGCGGCGAGCAGGTGGCCG
TCAAGGTGCAATACAACGATCTGCAGAAGAGATTCATCAGCGACCTAGGC
ACCATCATCTTTCTTCAGGACATTGTCGAGTTCTTCTTTAAGGACTACAA
CTTTGGATGGATCTTGAATGACCTGCGTAAGAACCTGGTGCTGGAGCTGA
ACTTTTTGCAGGAGGGACAAAATGCCGAACGCTGCGCCAAGGATATGGAA
AAGTTCAGCTATGTCCACGTTCCCAAGGTGCATTGGTCGTATACTAAAAC
GCGCGTGCTCACTCTTGAGTGGATGGATGGATGCAAGATCAGCGATCTTA
AGACGATTGAAAAAGAAAAACTCAGCTTAAAGGACATCGATGTGAAGCTC
TTTGAGGCCTTTGCTGAACAGATTTTCTACACTGGCTTCGTGCACGCCGA
TCCCCATCCAGGAAATATTTTTGTGAGAAAAAATAGAAAAAACGGGCGTG
CGGACATCATCTTGCTGGATCATGGACTTTACGAAGAACTGCCTCAAAAT
GTGCGAGGTCCACTCTGCGAATTCTGGGAGGCCACCGTTCTGCGCCAAGA
GAATCGGATGCAGGCCGCCGCCGAGAAGATCGGTATCGGTGACTACATGC
GCTTCGCCGAAGTGCTTTTCCAGCAGCCCATCCGGAATCGAGGTGGTGGC
ATACGCGGCAAACTGACGCAGGAGGACATCGATCACATGCAGGAGATAGC
CAGGAATAATTTCGAGCACATCATGGGCACCCTGAAGGAGATGCCCAGAA
GCATGTTGTTCGTGGTGCGTAATCTGAACACAGTGCGTGCCATTAGTCAT
CAGCATGGAGACGTGGTGAATCGTCCTCGGGTCATGGCGCGATATGCCCA
GAAATGCCTGTATATGCAGCACAATAGAAGGTCTCCCGTGCAATATATCC
GTTGGCTAAGTGGACGCATATACTTCGAATACTGTCTGTTTCTGTCAGCC
TTCAAGCTATATCTGCTCGACTGGTACTTCAACATCCTGTACCTAGTGGG
TCGGGCTCCTGCCTCTGCGAGAACCGTAATGAAAGATATAATGCAACCTC
CGGAGCCGAATGTGTTGAAATAAGTACGCTAACCGTTTGCTTTACGTCTA
AATCATAAGTTCAAAATGTACATTTTTATGTAAATGTTGTATACATCATT
TTTATTCCACTAACTTATTCTCAGAAATATGTAACCTTGTATGTGTTCAA
CTTGATGGGCGAAAATCCCGTCGAACCATGACAATATGAATGTAATTATT
TTATAATATGACAGAGAATGAGTAGTTTTTATAGTATGTAAACACATGTT
TATTCTAAAGCGATGAGCGAAGTATTTATGCCTTTATGATGCTTTACTTT
TAATTGGCTATTAAGGTGTAGGATTTCTGAATAAATTTACTAATCACTTG
TAAAAAAAAAAAAAAAAAAA

GH21972.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7616-RA 2415 CG7616-RA 289..2341 1..2053 10265 100 Plus
CG7616.a 2327 CG7616.a 350..2327 74..2051 9890 100 Plus
CG7616.a 2327 CG7616.a 289..352 1..64 320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11161055..11161893 63..901 4180 99.9 Plus
chr3L 24539361 chr3L 11162621..11163258 1414..2051 3130 99.4 Plus
chr3L 24539361 chr3L 11162209..11162557 1068..1416 1745 100 Plus
chr3L 24539361 chr3L 11161976..11162142 901..1067 835 100 Plus
chr3L 24539361 chr3L 11160935..11160998 1..64 320 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11170208..11171046 63..901 4195 100 Plus
3L 28110227 3L 11171774..11172413 1414..2053 3200 100 Plus
3L 28110227 3L 11171362..11171710 1068..1416 1745 100 Plus
3L 28110227 3L 11171129..11171295 901..1067 835 100 Plus
3L 28110227 3L 11170086..11170149 1..64 320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11163308..11164146 63..901 4195 100 Plus
3L 28103327 3L 11164874..11165513 1414..2053 3200 100 Plus
3L 28103327 3L 11164462..11164810 1068..1416 1745 100 Plus
3L 28103327 3L 11164229..11164395 901..1067 835 100 Plus
3L 28103327 3L 11163186..11163249 1..64 320 100 Plus
Blast to na_te.dros performed 2019-03-15 17:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1521..1628 1935..2043 119 57.8 Plus

GH21972.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:28:18 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11160935..11160998 1..64 100 -> Plus
chr3L 11161057..11161893 65..901 99 -> Plus
chr3L 11161977..11162142 902..1067 100 -> Plus
chr3L 11162209..11162555 1068..1414 100 -> Plus
chr3L 11162622..11163258 1415..2051 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:06 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 1..1674 50..1723 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:09 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 1..1674 50..1723 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:37 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 1..1674 50..1723 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:47:31 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 1..1674 50..1723 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:48 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 1..1674 50..1723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:47:47 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 289..2339 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:09 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 289..2339 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:37 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 270..2320 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:47:31 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 289..2099 1..1811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:48 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
CG7616-RA 270..2320 1..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:18 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11170086..11170149 1..64 100 -> Plus
3L 11170210..11171046 65..901 100 -> Plus
3L 11171130..11171295 902..1067 100 -> Plus
3L 11171362..11171708 1068..1414 100 -> Plus
3L 11171775..11172411 1415..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:18 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11170086..11170149 1..64 100 -> Plus
3L 11170210..11171046 65..901 100 -> Plus
3L 11171130..11171295 902..1067 100 -> Plus
3L 11171362..11171708 1068..1414 100 -> Plus
3L 11171775..11172411 1415..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:18 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11170086..11170149 1..64 100 -> Plus
3L 11170210..11171046 65..901 100 -> Plus
3L 11171130..11171295 902..1067 100 -> Plus
3L 11171362..11171708 1068..1414 100 -> Plus
3L 11171775..11172411 1415..2051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:37 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11163186..11163249 1..64 100 -> Plus
arm_3L 11163310..11164146 65..901 100 -> Plus
arm_3L 11164230..11164395 902..1067 100 -> Plus
arm_3L 11164462..11164808 1068..1414 100 -> Plus
arm_3L 11164875..11165511 1415..2051 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:54:06 Download gff for GH21972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11163310..11164146 65..901 100 -> Plus
3L 11164230..11164395 902..1067 100 -> Plus
3L 11164462..11164808 1068..1414 100 -> Plus
3L 11164875..11165511 1415..2051 100   Plus
3L 11163186..11163249 1..64 100 -> Plus

GH21972.hyp Sequence

Translation from 0 to 1722

> GH21972.hyp
CPKSKHWVNFAAGGQKMRPLQRVRQLLSLGTRIRGKRALNGLREANVQKG
GRPVLRFSLLAAGAGGLAYDGIVNDFTYCGASVRFVRSLKTAGLIAADYL
RLDENDPEYETKVKLLHKKSAERLLETCLLNGGLYIKVGQGFAAINDILP
VEYTSTLSLLQDRCLPTTQADVQKVFRKDFGQLPEEIYQEFDYQPVAAAS
LAQVFKARLPSGEQVAVKVQYNDLQKRFISDLGTIIFLQDIVEFFFKDYN
FGWILNDLRKNLVLELNFLQEGQNAERCAKDMEKFSYVHVPKVHWSYTKT
RVLTLEWMDGCKISDLKTIEKEKLSLKDIDVKLFEAFAEQIFYTGFVHAD
PHPGNIFVRKNRKNGRADIILLDHGLYEELPQNVRGPLCEFWEATVLRQE
NRMQAAAEKIGIGDYMRFAEVLFQQPIRNRGGGIRGKLTQEDIDHMQEIA
RNNFEHIMGTLKEMPRSMLFVVRNLNTVRAISHQHGDVVNRPRVMARYAQ
KCLYMQHNRRSPVQYIRWLSGRIYFEYCLFLSAFKLYLLDWYFNILYLVG
RAPASARTVMKDIMQPPEPNVLK*

GH21972.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7616-PB 557 CG7616-PB 1..557 17..573 2902 100 Plus
CG7616-PA 557 CG7616-PA 1..557 17..573 2902 100 Plus
CG3608-PB 518 CG3608-PB 4..442 52..481 672 34.8 Plus
CG3608-PA 518 CG3608-PA 4..442 52..481 672 34.8 Plus
CG32649-PA 661 CG32649-PA 272..511 115..355 168 21.8 Plus

GH21972.pep Sequence

Translation from 1 to 1722

> GH21972.pep
CPKSKHWVNFAAGGQKMRPLQRVRQLLSLGTRIRGKRALNGLREANVQKG
GRPVLRFSLLAAGAGGLAYDGIVNDFTYCGASVRFVRSLKTAGLIAADYL
RLDENDPEYETKVKLLHKKSAERLLETCLLNGGLYIKVGQGFAAINDILP
VEYTSTLSLLQDRCLPTTQADVQKVFRKDFGQLPEEIYQEFDYQPVAAAS
LAQVFKARLPSGEQVAVKVQYNDLQKRFISDLGTIIFLQDIVEFFFKDYN
FGWILNDLRKNLVLELNFLQEGQNAERCAKDMEKFSYVHVPKVHWSYTKT
RVLTLEWMDGCKISDLKTIEKEKLSLKDIDVKLFEAFAEQIFYTGFVHAD
PHPGNIFVRKNRKNGRADIILLDHGLYEELPQNVRGPLCEFWEATVLRQE
NRMQAAAEKIGIGDYMRFAEVLFQQPIRNRGGGIRGKLTQEDIDHMQEIA
RNNFEHIMGTLKEMPRSMLFVVRNLNTVRAISHQHGDVVNRPRVMARYAQ
KCLYMQHNRRSPVQYIRWLSGRIYFEYCLFLSAFKLYLLDWYFNILYLVG
RAPASARTVMKDIMQPPEPNVLK*

GH21972.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25249-PA 558 GF25249-PA 1..555 17..571 2272 75.4 Plus
Dana\GF12996-PA 518 GF12996-PA 4..503 52..538 694 33.9 Plus
Dana\GF20885-PA 681 GF20885-PA 292..547 115..375 176 23 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15486-PA 557 GG15486-PA 1..557 17..573 2786 94.8 Plus
Dere\GG22994-PA 518 GG22994-PA 4..442 52..481 687 34.8 Plus
Dere\GG19534-PA 661 GG19534-PA 272..513 115..357 170 23.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14836-PA 515 GH14836-PA 3..506 59..563 2040 73.3 Plus
Dgri\GH20324-PA 441 GH20324-PA 3..434 52..474 645 34.2 Plus
Dgri\GH17620-PA 692 GH17620-PA 303..558 115..375 174 23.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7616-PB 557 CG7616-PB 1..557 17..573 2902 100 Plus
CG7616-PA 557 CG7616-PA 1..557 17..573 2902 100 Plus
Adck-PB 518 CG3608-PB 4..442 52..481 672 34.8 Plus
Adck-PA 518 CG3608-PA 4..442 52..481 672 34.8 Plus
Coq8-PA 661 CG32649-PA 272..511 115..355 168 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13688-PA 559 GI13688-PA 43..559 55..573 1955 68.6 Plus
Dmoj\GI19996-PA 515 GI19996-PA 3..500 52..538 690 33.4 Plus
Dmoj\GI16276-PA 692 GI16276-PA 303..558 115..375 178 23.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22769-PA 559 GL22769-PA 1..553 17..568 2315 77.6 Plus
Dper\GL10232-PA 517 GL10232-PA 4..502 52..538 685 33.7 Plus
Dper\GL22961-PA 661 GL22961-PA 272..513 115..357 171 23.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20483-PA 559 GA20483-PA 1..553 17..568 2316 77.4 Plus
Dpse\GA17555-PA 517 GA17555-PA 4..502 52..538 680 33.5 Plus
Dpse\GA17042-PA 661 GA17042-PA 272..513 115..357 171 23.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25258-PA 557 GM25258-PA 1..557 17..573 2909 97.1 Plus
Dsec\GM11887-PA 518 GM11887-PA 4..442 52..481 688 34.8 Plus
Dsec\GM11527-PA 661 GM11527-PA 272..513 115..357 173 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14292-PA 557 GD14292-PA 1..557 17..573 2908 96.9 Plus
Dsim\GD11885-PA 518 GD11885-PA 4..442 52..481 692 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14030-PA 554 GJ14030-PA 35..545 53..565 2091 75 Plus
Dvir\GJ21245-PA 515 GJ21245-PA 3..480 52..518 684 33.4 Plus
Dvir\GJ16920-PA 681 GJ16920-PA 292..547 115..375 183 23.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20341-PA 468 GK20341-PA 3..467 102..570 2046 79.1 Plus
Dwil\GK21422-PA 518 GK21422-PA 5..503 52..538 681 33.4 Plus
Dwil\GK10272-PA 695 GK10272-PA 306..505 115..313 182 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21796-PA 557 GE21796-PA 1..557 17..573 2804 95.5 Plus
Dyak\GE14431-PA 520 GE14431-PA 4..442 52..481 683 34.5 Plus
Dyak\GE16192-PA 661 GE16192-PA 272..513 115..357 168 22.7 Plus