Clone GH22074 Report

Search the DGRC for GH22074

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:220
Well:74
Vector:pOT2
Associated Gene/Transcriptrux-RA
Protein status:GH22074.pep: gold
Preliminary Size:1391
Sequenced Size:1343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4336 2001-01-01 Release 2 assignment
CG4336 2002-06-07 Blastp of sequenced clone
CG4336 2003-01-01 Sim4 clustering to Release 3
rux 2008-04-29 Release 5.5 accounting
rux 2008-08-15 Release 5.9 accounting
rux 2008-12-18 5.12 accounting

Clone Sequence Records

GH22074.complete Sequence

1343 bp (1343 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119537

> GH22074.complete
TCCAAGTCGAATTGTATATATTGTAAATTATATTTATTTTTTATAAGCGC
AATCGCATGAAAATACTTGAAGGAAATGAGCGCTCCAGAAGAACATAAGG
AGACGCCTTTGGAGGTGATCCATGAGTTCATCAATGGCGTAGATGATGGG
ACCATACGCCGCGACCTGGGGGAGGACTGCATCCTCAGCTTCTACAGTCG
AAATGTGCGTGGCGCCAAGGCAATCACCGGATTTTTGAGAAACCAGTTGA
CAATGCGCTACAAGCACGAGGGATTCGAGGAAGCAGCACAAATTGAGTGG
GGCGACGAACTTCTGCTGAAGGCGCGCTTCGGCAGATCGTTTGACTCGGA
ACGTCGTCGCATCTACGAGGAGAAGGAGCGCACAGGCACCACTCTGCATG
TGCGTCCAGAGAGCGATGACGAGGAGGTAAATGAAAAGTTTTCCTCAACC
CTGATCACACCGCCCCGTCCATCGAGCTACAATTTGAACTCCCTGAAGTA
TGTGGAGGCGTGTGGCCTGTTGAACAAGCGTAATGAACATATCTACGGCG
GCCTGGACATGGGCGAGTCATGCGCGGTCCACCTTACTTTGGGCTATCGG
AGCACCTTTCTGCCCGGCGGTCAAGTGAGCGGCTTTGAAATCTGCCTGGC
TGTCTACGATCGGGGTCTGACAAGCCTCAAACGATCCACTCTGATTCCGC
CACTGTGCAGCATTTCCTTTGCACGACGGGCCAGCGCCCGATGTAATCCA
ACCACCGATGATGAGGAGGATACCGAGGAGGATTCAACGCCGCCAACAGC
GAGGCGCTGCGTGCGTCGTACTTTATTTACAGAGGAGAACACTCAGAAAG
AAGAGGATGCCGATTTCATACCCGTGGTGGAGCAAGAGCAGCCAGCACCG
CAGGAGCAGCCAGCACCGCAGCAGGCTGAGGAGACTGGCGAGGTAGTGAT
CCCCGTAGATATATCCACAGCCTTGAAGACCACAAATTTCAGCAGCTGTA
CACCGAGGAAACGACAACAGGCAACCAATGGCAACGAAGTAGTGCGTAAA
CGTGCGACGGGACCAAGGCGGATGCGTTTCTAGACCGGACAGATATTTAA
ACAGCTATAGTCCCTAGTTGCTTTTCCAAATTTACGTAGCACAATTATTT
TCTTTGGCTTTCGAGGATACCCGACAAATTTCCGTAATTATTTGAACAAG
ACTGATTGCACCCGCTTTGGTTCCGCTTCCTGGGACCCCGCGTCGCGCTA
GGCTAAACTACAATATGTATTGTTTTACATAATCCCCTGTATTTATTTGT
GTATTAAAGTTCAATGTTTATTTAAAAAAAAAAAAAAAAAAAA

GH22074.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
rux-RA 1514 rux-RA 184..1508 1..1325 6625 100 Plus
rux.a 1327 rux.a 44..1321 48..1325 6390 100 Plus
rux.b 1303 rux.b 70..1297 98..1325 6140 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5927985..5929210 1323..98 6085 99.8 Minus
chrX 22417052 chrX 5929301..5929397 97..1 485 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6035751..6036978 1325..98 6140 100 Minus
X 23542271 X 6037069..6037165 97..1 485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6043849..6045076 1325..98 6140 100 Minus
X 23527363 X 6045167..6045263 97..1 485 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:20:09 has no hits.

GH22074.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:20:45 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5927985..5929210 98..1323 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:10 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 1..1008 76..1083 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:25 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 1..1008 76..1083 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:24 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 1..1008 76..1083 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:49 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 1..1008 76..1083 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:24 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 1..1008 76..1083 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:57:20 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 12..1334 1..1323 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:25 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 12..1334 1..1323 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:24 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 98..1420 1..1323 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:49 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 12..1334 1..1323 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:24 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
rux-RA 98..1420 1..1323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:45 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
X 6035753..6036978 98..1323 100 <- Minus
X 6037069..6037165 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:45 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
X 6035753..6036978 98..1323 100 <- Minus
X 6037069..6037165 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:20:45 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
X 6035753..6036978 98..1323 100 <- Minus
X 6037069..6037165 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:24 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5929786..5931011 98..1323 100 <- Minus
arm_X 5931102..5931198 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:17 Download gff for GH22074.complete
Subject Subject Range Query Range Percent Splice Strand
X 6043851..6045076 98..1323 100 <- Minus
X 6045167..6045263 1..97 100   Minus

GH22074.pep Sequence

Translation from 75 to 1082

> GH22074.pep
MSAPEEHKETPLEVIHEFINGVDDGTIRRDLGEDCILSFYSRNVRGAKAI
TGFLRNQLTMRYKHEGFEEAAQIEWGDELLLKARFGRSFDSERRRIYEEK
ERTGTTLHVRPESDDEEVNEKFSSTLITPPRPSSYNLNSLKYVEACGLLN
KRNEHIYGGLDMGESCAVHLTLGYRSTFLPGGQVSGFEICLAVYDRGLTS
LKRSTLIPPLCSISFARRASARCNPTTDDEEDTEEDSTPPTARRCVRRTL
FTEENTQKEEDADFIPVVEQEQPAPQEQPAPQQAEETGEVVIPVDISTAL
KTTNFSSCTPRKRQQATNGNEVVRKRATGPRRMRF*

GH22074.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22065-PA 405 GF22065-PA 41..405 10..335 584 39.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\rux-PA 339 GG18457-PA 1..339 1..335 1232 73.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17896-PA 314 GH17896-PA 14..298 13..281 229 28.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
rux-PB 335 CG4336-PB 1..335 1..335 1752 100 Plus
rux-PA 335 CG4336-PA 1..335 1..335 1752 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16487-PA 292 GI16487-PA 4..263 5..273 305 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14959-PA 339 GL14959-PA 17..261 13..260 384 36.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18118-PA 339 GA18118-PA 17..261 13..260 389 36.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\rux-PA 349 GM12600-PA 1..349 1..335 1437 83 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\rux-PA 344 GD16220-PA 1..344 1..335 1423 83.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16032-PA 310 GJ16032-PA 15..302 10..328 419 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19724-PA 318 GK19724-PA 22..255 5..251 474 41.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\rux-PA 332 GE15679-PA 1..332 1..335 1246 73.1 Plus

GH22074.hyp Sequence

Translation from 75 to 1082

> GH22074.hyp
MSAPEEHKETPLEVIHEFINGVDDGTIRRDLGEDCILSFYSRNVRGAKAI
TGFLRNQLTMRYKHEGFEEAAQIEWGDELLLKARFGRSFDSERRRIYEEK
ERTGTTLHVRPESDDEEVNEKFSSTLITPPRPSSYNLNSLKYVEACGLLN
KRNEHIYGGLDMGESCAVHLTLGYRSTFLPGGQVSGFEICLAVYDRGLTS
LKRSTLIPPLCSISFARRASARCNPTTDDEEDTEEDSTPPTARRCVRRTL
FTEENTQKEEDADFIPVVEQEQPAPQEQPAPQQAEETGEVVIPVDISTAL
KTTNFSSCTPRKRQQATNGNEVVRKRATGPRRMRF*

GH22074.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
rux-PB 335 CG4336-PB 1..335 1..335 1752 100 Plus
rux-PA 335 CG4336-PA 1..335 1..335 1752 100 Plus