Clone GH22106 Report

Search the DGRC for GH22106

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:221
Well:6
Vector:pOT2
Associated Gene/Transcriptjdp-RA
Protein status:GH22106.pep: gold
Preliminary Size:2014
Sequenced Size:1974

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2239 2001-01-01 Release 2 assignment
CG2239 2001-09-19 Blastp of sequenced clone
CG2239 2003-01-01 Sim4 clustering to Release 3
jdp 2008-04-29 Release 5.5 accounting
jdp 2008-08-15 Release 5.9 accounting
jdp 2008-12-18 5.12 accounting

Clone Sequence Records

GH22106.complete Sequence

1974 bp (1974 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060331

> GH22106.complete
AACATCGTGAGCGCCGCTTATCCCAAAAAAAACATATATAAATTCCCGAC
CGATCCCAGGAATAACTGACGCAATGAGCGCCGTTGATGCTATAATCAAT
TACAAGCGCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGA
GAACTCATCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTC
AGTACCATCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTC
CAGCAGTTAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGC
CATCTACGACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGT
GGCTGGGCATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCC
GAGAAAGTGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGA
TCGCATGCTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCG
GTGCAGGATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCC
CACCGGCGGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAA
GGGCGAGTGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACT
ACGAGATCTAAGAGGGTCGTCGGCCACATATAGATGTTTCAATTTTAAAA
ATATTTCAAGTCAAACCGATGAGCGAGCAGGAGGAGTTGGGTGTCTATCC
CGAAAGTTATGCAATTATATCAAAATATTCTGAAAGGGAAACAAAGTTTA
TTATCGATGTGTAACTTAAGCGTTGCGAACCACAGAGCACAGATACTCTT
ATATAGATGTTTATAGGTGTACAAATAAAAAATATATAGAAAAATGGTAA
TTAACTAACGTATATTTAAGTGAAAGAAACTGTAATTTCAATAAACTCCC
CCGATGAAAAATCCCAGGCGGAGCGGCAAGAATTTTAAGTTGAAGTAATT
AGTCAAATTTTATCGCAGTCATGCATATATGAATATACACACCATATACT
ATATATATATTTATGTAATCAGTGTATTTGTATATCGATGTTTCAAGTAC
CATGAATGTACCAAGACAATCCCTTGGCAGCAAACAAAACTAAACTAAAG
CTAATGCTAAAGCTGTAACTGAAACTAAACTATTACTTAACTGGTGACAG
TCTAGCGATTCACCCACCACGAGCCAGAAAATGAGAACATATTGAAAGAC
ATGGCAAAGCGAATTTAAACCTCTATACACACGACACATTTGCATAGTCA
AAAAAAGTAAATCTCACTCGGTGTCCTTTTTAAATGCAACATTGCGAAAA
GCTCCACTGAACTGTTTTCCCTACCTGAAAAATCATTTTCGCAGAAAATC
AACAAAAAAAAAAAAAAATGTGACAAAATATCAAAGAAAAATCAAACAAA
AAAAAAAGTGCAGAGTTTATATAAATGTTTTGATGGATAGAGCGGTGAAC
TTTTCAACTTATACATATAGCAGAGATTATTGTCATTATTATTGTACTAT
TATGCGCAGCGCAGAGAAATAATTACTACATAAATGTTGTTGCTGGATTT
AAATGCATTACTTATACAACTACATATGAAAATTGTTTTAAGACATACTC
TATTGAATTTATTCAAATACACACATATTGCGGATAGAGCAGACCAGATC
CAGATCAAATCGGAACAGAAAGGGAGGAACAGCTGCAAGCCAAAGGCGTG
ACCCCGCGACCCCCGACCCCTTAGAAGGGGCGGTGGGCGGGGCTCCAGCT
AGTACTAGCAATTACACATTAATTAGTGTTGGTTCTAACTTAGCTGGCGA
ATGTTACACGCAGCGAGCGATCAGATCACAAATAAATCAAATTTTTGAAA
GGGGTTCCCACTCCTGGCGGAACCTCAGGTATTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

GH22106.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 2028 jdp-RA 54..1988 1..1936 9640 99.9 Plus
jdp.a 1937 jdp.a 57..1932 60..1936 9345 99.9 Plus
jdp-RB 1989 jdp-RB 431..1949 417..1936 7560 99.9 Plus
jdp-RB 1989 jdp-RB 54..432 1..379 1895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26339572..26341088 1934..417 7495 99.7 Minus
chr3R 27901430 chr3R 26342121..26342278 418..261 790 100 Minus
chr3R 27901430 chr3R 26348762..26348894 160..28 665 100 Minus
chr3R 27901430 chr3R 26345745..26345848 263..160 520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30517057..30518575 1936..417 7550 99.9 Minus
3R 32079331 3R 30519608..30519765 418..261 790 100 Minus
3R 32079331 3R 30526243..30526375 160..28 665 100 Minus
3R 32079331 3R 30523227..30523330 263..160 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30257888..30259406 1936..417 7560 99.9 Minus
3R 31820162 3R 30260439..30260596 418..261 790 100 Minus
3R 31820162 3R 30267074..30267206 160..28 665 100 Minus
3R 31820162 3R 30264058..30264161 263..160 520 100 Minus
Blast to na_te.dros performed 2019-03-16 16:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3798..3957 763..918 123 58.3 Plus

GH22106.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:06:39 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26339572..26340048 1458..1934 99 == Minus
chr3R 26340113..26341086 419..1392 99 <- Minus
chr3R 26342121..26342276 263..418 100 <- Minus
chr3R 26345746..26345847 161..262 100 <- Minus
chr3R 26348762..26348894 28..160 100 <- Minus
chr3R 26349500..26349526 1..27 92   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:14 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 74..661 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:49 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 74..661 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:57 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 74..661 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:30 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 74..661 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:19:04 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 74..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:21 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 30..1962 1..1934 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:49 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 30..1962 1..1934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:57 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 28..1960 1..1934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:31 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 30..1962 1..1934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:19:04 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 28..1960 1..1934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:06:39 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30519608..30519763 263..418 100 <- Minus
3R 30523228..30523329 161..262 100 <- Minus
3R 30526243..30526375 28..160 100 <- Minus
3R 30526984..30527010 1..27 100   Minus
3R 30517059..30518573 419..1934 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:06:39 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30519608..30519763 263..418 100 <- Minus
3R 30523228..30523329 161..262 100 <- Minus
3R 30526243..30526375 28..160 100 <- Minus
3R 30526984..30527010 1..27 100   Minus
3R 30517059..30518573 419..1934 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:06:39 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30519608..30519763 263..418 100 <- Minus
3R 30523228..30523329 161..262 100 <- Minus
3R 30526243..30526375 28..160 100 <- Minus
3R 30526984..30527010 1..27 100   Minus
3R 30517059..30518573 419..1934 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:57 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26342781..26344295 419..1934 99 <- Minus
arm_3R 26345330..26345485 263..418 100 <- Minus
arm_3R 26348950..26349051 161..262 100 <- Minus
arm_3R 26351965..26352097 28..160 100 <- Minus
arm_3R 26352706..26352732 1..27 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:39 Download gff for GH22106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30257890..30259404 419..1934 99 <- Minus
3R 30260439..30260594 263..418 100 <- Minus
3R 30264059..30264160 161..262 100 <- Minus
3R 30267074..30267206 28..160 100 <- Minus
3R 30267815..30267841 1..27 100   Minus

GH22106.pep Sequence

Translation from 73 to 660

> GH22106.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKESMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGG
LTAASPNPAHRRASEGGAALYYGSRKGEWGGENTDVANKFRNYEI*

GH22106.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23324-PA 195 GF23324-PA 1..195 1..195 923 95.4 Plus
Dana\GF10450-PA 354 GF10450-PA 3..72 16..86 159 43.7 Plus
Dana\GF15175-PA 346 GF15175-PA 3..72 16..86 146 42.3 Plus
Dana\GF19555-PA 334 GF19555-PA 3..72 16..86 143 39.4 Plus
Dana\GF23490-PA 130 GF23490-PA 4..72 17..86 138 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11926-PA 184 GG11926-PA 1..184 1..195 939 91.4 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 3..72 16..86 154 42.3 Plus
Dere\GG23080-PA 874 GG23080-PA 26..123 13..114 143 32.4 Plus
Dere\GG13187-PA 127 GG13187-PA 4..72 17..86 142 41.4 Plus
Dere\GG24779-PA 350 GG24779-PA 3..72 16..86 142 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17424-PA 191 GH17424-PA 1..191 1..195 869 90.3 Plus
Dgri\GH15011-PA 353 GH15011-PA 3..72 16..86 153 40.8 Plus
Dgri\GH11404-PA 346 GH11404-PA 3..72 16..86 142 39.4 Plus
Dgri\GH11226-PA 355 GH11226-PA 25..88 17..80 141 43.8 Plus
Dgri\GH16902-PA 127 GH16902-PA 3..72 16..86 136 39.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PA 195 CG2239-PA 1..195 1..195 1047 100 Plus
jdp-PB 182 CG2239-PB 1..182 1..195 959 93.3 Plus
jdp-PC 170 CG2239-PC 1..115 1..115 611 100 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus
CG5001-PC 346 CG5001-PC 3..72 16..86 151 40.8 Plus
CG5001-PD 350 CG5001-PD 3..72 16..86 151 40.8 Plus
CG5001-PA 350 CG5001-PA 3..72 16..86 151 40.8 Plus
CG5001-PB 350 CG5001-PB 3..72 16..86 151 40.8 Plus
shv-PA 354 CG4164-PA 25..104 17..101 150 36.5 Plus
CG7130-PA 128 CG7130-PA 3..72 16..86 145 40.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22753-PA 192 GI22753-PA 1..192 1..195 933 90.8 Plus
Dmoj\GI13174-PA 352 GI13174-PA 3..72 16..86 155 42.3 Plus
Dmoj\GI21690-PA 355 GI21690-PA 25..88 17..80 152 45.3 Plus
Dmoj\GI15199-PA 325 GI15199-PA 3..72 16..86 150 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14039-PA 177 GL14039-PA 6..177 28..195 742 89 Plus
Dper\GL20776-PA 230 GL20776-PA 3..72 16..86 153 40.8 Plus
Dper\GL15626-PA 318 GL15626-PA 3..72 16..86 146 42.3 Plus
Dper\GL25452-PA 129 GL25452-PA 3..72 16..86 136 38 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15317-PA 199 GA15317-PA 1..199 1..195 896 91 Plus
Dpse\GA15317-PB 186 GA15317-PB 1..186 1..195 805 84.4 Plus
Dpse\GA15317-PC 182 GA15317-PC 1..119 1..119 609 94.1 Plus
Dpse\GA10408-PA 353 GA10408-PA 3..72 16..86 152 40.8 Plus
Dpse\GA18584-PA 346 GA18584-PA 3..72 16..86 146 42.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12145-PA 182 GM12145-PA 1..182 1..195 952 92.3 Plus
Dsec\GM16265-PA 72 GM16265-PA 1..72 124..195 361 97.2 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 3..72 16..86 154 43.7 Plus
Dsec\GM16806-PA 350 GM16806-PA 3..72 16..86 146 40.8 Plus
Dsec\GM22099-PA 128 GM22099-PA 4..72 17..86 139 41.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16969-PA 182 GD16969-PA 1..182 1..195 956 92.8 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 3..72 16..86 159 43.7 Plus
Dsim\GD23083-PA 346 GD23083-PA 3..72 16..86 146 40.8 Plus
Dsim\GD12075-PA 128 GD12075-PA 4..72 17..86 139 41.4 Plus
Dsim\GD17107-PA 143 GD17107-PA 3..65 16..79 134 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22754-PA 192 GJ22754-PA 1..192 1..195 948 90.8 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 3..72 16..86 148 43.7 Plus
Dvir\GJ11949-PA 351 GJ11949-PA 3..66 16..80 147 44.6 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 3..72 16..86 144 42.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13121-PA 193 GK13121-PA 1..193 1..195 909 89.3 Plus
Dwil\GK19161-PA 125 GK19161-PA 4..79 17..93 154 39 Plus
Dwil\GK16875-PA 356 GK16875-PA 3..73 16..87 152 40.3 Plus
Dwil\GK15183-PA 346 GK15183-PA 3..72 16..86 146 42.3 Plus
Dwil\GK19767-PA 330 GK19767-PA 3..72 16..86 144 40.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23376-PA 182 GE23376-PA 1..182 1..195 948 91.8 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 3..72 16..86 154 42.3 Plus
Dyak\GE22992-PA 127 GE22992-PA 3..72 16..86 144 40.8 Plus
Dyak\GE19512-PA 127 GE19512-PA 3..72 16..86 144 40.8 Plus
Dyak\GE17451-PA 350 GE17451-PA 3..72 16..86 142 40.8 Plus

GH22106.hyp Sequence

Translation from 73 to 660

> GH22106.hyp
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKESMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGG
LTAASPNPAHRRASEGGAALYYGSRKGEWGGENTDVANKFRNYEI*

GH22106.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PA 195 CG2239-PA 1..195 1..195 1047 100 Plus
jdp-PB 182 CG2239-PB 1..182 1..195 959 93.3 Plus
jdp-PC 170 CG2239-PC 1..115 1..115 611 100 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
CG7130-PA 128 CG7130-PA 3..72 16..86 145 40.8 Plus