Clone GH22160 Report

Search the DGRC for GH22160

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:221
Well:60
Vector:pOT2
Associated Gene/TranscriptCG5805-RA
Protein status:GH22160.pep: gold
Preliminary Size:2065
Sequenced Size:1981

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5805 2001-01-01 Release 2 assignment
CG5805 2001-07-04 Blastp of sequenced clone
CG5805 2003-01-01 Sim4 clustering to Release 3
CG5805 2008-04-29 Release 5.5 accounting
CG5805 2008-08-15 Release 5.9 accounting
CG5805 2008-12-18 5.12 accounting

Clone Sequence Records

GH22160.complete Sequence

1981 bp (1981 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051574

> GH22160.complete
TGATATGCACAAGGCAAATATCCAAACAGACACAGTGGCGTAGATATACA
TATATGCATATGTTAATACACGGCAACAATAAGCGCAGCACACAAAGGAA
CCGATCAAGAGTCATGCAGGTCGAATGCCTCCAGAGACATCAGCAGCATA
CCCGGCTGTGAAGGAAGCCCCTATCGCCTCGAAGCTTCCACGCATGCGAA
CAATCCTTTGCGGACGCACTGAGTCCACCAGGAGTCGTTGGAGCAGCCGC
AACCCCGTCGTCCGGTAGCAGCGATGACGGAAAGCAGCAGTAGCACCAAA
TCCCGCCTAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGC
CACATACATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCT
TTCCGCTCTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCG
CTGACCGTGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTA
CAAGGGCATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGC
CCGGTCTGTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGC
GTCTTTTACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCT
GGGTGCTGGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGC
TGGTGGGCCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCC
ATGGTGCTCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCC
GCTGGGCATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGG
ACATTGGCAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGC
GGCTACACCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTG
GGCCTTCTATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTT
GGGTGTCCCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTC
ACAACGACAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCA
GGTCCACCGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGG
AGGAGAAGCTGAACTGCTTCTTCAAGGGACTGTCCGCCCGCCTGGTGCAG
TCGGCAGCCTTCTCATTCAGCATTATTCTAGGTTACGAGACGATCAAGCG
CATTGCGGTGGACGAGCAGTACAAGCATCAGATCCGCTGGTAAAGAACGC
ACAATCCCCAGCCAAACGGAAACCAACTCAAAACTGCATTTACGCGACGT
ACTGAGAACCACCAGAACTGGAGGAGATTCGCCCCCGATTGTAAATAACA
AGAGCTAGAGAATGAATTAGAGGAGCACAAGTTAATTAGTTGAATTGCCG
ACGATAGCGAATTATAAATCATCGATGGCGGACGCATCGAGGATGTATTG
TAGTAGAATGTTGCAACATACTTGCGGCTAGGATGTTCAAGTAACGCAAT
TCAATATGCAAATACCCCAAAGTGTTGTAGCTTAAAGTGTACATTATTTT
TGTTATACTTAGTCGTTTTATACCTAACACGCGAAGAGGCCGATCGGTGA
CAAGCATAATTTATTATACACCTAACTAAACTTGTACGTGTACGTGTAAT
TGATGATGATGTTGATAATACTGTTGATTACATTGGTAGCCCAATTACTT
TTACACAACTAAGCACAGCAATGTTTGCGCCAAACAAAATACCACAAACT
GGACATGCCGAATTAGAAATTAATATCGAAACAGGGTCGCCCCTCCCCAG
AGGTCGGGAGGCACTACACTTAGCTAAGCATTCGTGTGTGTGTGTTCTCT
GAGTGGATAAACTAGTTTTAGTCTGCATTATAATAAAGTACAAACCAAGA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH22160.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RA 2203 CG5805-RA 89..2040 1..1952 9760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20609175..20610100 973..42 4430 98.6 Minus
chr3R 27901430 chr3R 20607939..20608793 1952..1098 4260 99.9 Minus
chr3R 27901430 chr3R 20608987..20609117 1103..973 655 100 Minus
chr3R 27901430 chr3R 20610495..20610537 43..1 215 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786904 973..42 4660 100 Minus
3R 32079331 3R 24784737..24785591 1952..1098 4275 100 Minus
3R 32079331 3R 24785785..24785915 1103..973 655 100 Minus
3R 32079331 3R 24787295..24787337 43..1 215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24526804..24527735 973..42 4660 100 Minus
3R 31820162 3R 24525568..24526422 1952..1098 4275 100 Minus
3R 31820162 3R 24526616..24526746 1103..973 655 100 Minus
3R 31820162 3R 24528126..24528168 43..1 215 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:19:57 has no hits.

GH22160.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:20:47 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20609175..20610098 44..973 98 <- Minus
chr3R 20610495..20610537 1..43 100   Minus
chr3R 20607939..20608789 1102..1952 99 <- Minus
chr3R 20608989..20609116 974..1101 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:18 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 1..1020 274..1293 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:43:02 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 1..1020 274..1293 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:48 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 1..1020 274..1293 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:01 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 1..1020 274..1293 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:17:17 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 1..1020 274..1293 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:50:21 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 84..2035 1..1952 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:43:02 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 94..2045 1..1952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:48 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 85..2036 1..1952 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:01 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 84..2035 1..1952 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:17 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 85..2036 1..1952 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:47 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24784737..24785587 1102..1952 100 <- Minus
3R 24785787..24785914 974..1101 100 <- Minus
3R 24785973..24786902 44..973 100 <- Minus
3R 24787295..24787337 1..43 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:47 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24784737..24785587 1102..1952 100 <- Minus
3R 24785787..24785914 974..1101 100 <- Minus
3R 24785973..24786902 44..973 100 <- Minus
3R 24787295..24787337 1..43 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:47 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24784737..24785587 1102..1952 100 <- Minus
3R 24785787..24785914 974..1101 100 <- Minus
3R 24785973..24786902 44..973 100 <- Minus
3R 24787295..24787337 1..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:48 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20610459..20611309 1102..1952 100 <- Minus
arm_3R 20611509..20611636 974..1101 100 <- Minus
arm_3R 20611695..20612624 44..973 100 <- Minus
arm_3R 20613017..20613059 1..43 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:56:40 Download gff for GH22160.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24526618..24526745 974..1101 100 <- Minus
3R 24525568..24526418 1102..1952 100 <- Minus
3R 24526804..24527733 44..973 100 <- Minus
3R 24528126..24528168 1..43 100   Minus

GH22160.hyp Sequence

Translation from 273 to 1292

> GH22160.hyp
MTESSSSTKSRLAVAPTGVGGAAEGATYIRTIEWDMMNKTKFFPLSMLSS
FSVRCCLFPLTVIKTQLQVQHKSDVYKGMVDCAMKIYRSEGVPGLYRGFW
ISSVQIVSGVFYISTYEGVRHVLNDLGAGHRMKALAGGGCASLVGQTIIV
PFDVISQHAMVLGMSAHAGSKGDINPLGIKSWPGRSRLHISMDIGREIMR
RDGFRGFYRGYTASLMAYVPNSAMWWAFYHLYQDELFRICPVWVSHLFIQ
CVAGSLGGFTTTILTNPLDIVRARLQVHRLDSMSVAFRELWQEEKLNCFF
KGLSARLVQSAAFSFSIILGYETIKRIAVDEQYKHQIRW*

GH22160.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PB 339 CG5805-PB 1..339 1..339 1779 100 Plus
CG5805-PA 339 CG5805-PA 1..339 1..339 1779 100 Plus
aralar1-PB 679 CG2139-PB 344..603 57..327 188 23.7 Plus
aralar1-PD 682 CG2139-PD 347..606 57..327 188 23.7 Plus
aralar1-PA 682 CG2139-PA 347..606 57..327 188 23.7 Plus
aralar1-PB 679 CG2139-PB 333..518 138..337 157 27.2 Plus
aralar1-PD 682 CG2139-PD 336..521 138..337 157 27.2 Plus

GH22160.pep Sequence

Translation from 273 to 1292

> GH22160.pep
MTESSSSTKSRLAVAPTGVGGAAEGATYIRTIEWDMMNKTKFFPLSMLSS
FSVRCCLFPLTVIKTQLQVQHKSDVYKGMVDCAMKIYRSEGVPGLYRGFW
ISSVQIVSGVFYISTYEGVRHVLNDLGAGHRMKALAGGGCASLVGQTIIV
PFDVISQHAMVLGMSAHAGSKGDINPLGIKSWPGRSRLHISMDIGREIMR
RDGFRGFYRGYTASLMAYVPNSAMWWAFYHLYQDELFRICPVWVSHLFIQ
CVAGSLGGFTTTILTNPLDIVRARLQVHRLDSMSVAFRELWQEEKLNCFF
KGLSARLVQSAAFSFSIILGYETIKRIAVDEQYKHQIRW*

GH22160.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23183-PA 336 GF23183-PA 21..336 24..339 1644 95.9 Plus
Dana\GF23336-PA 693 GF23336-PA 358..619 55..327 187 24.5 Plus
Dana\GF23042-PA 317 GF23042-PA 34..290 56..308 169 24.2 Plus
Dana\GF20265-PA 299 GF20265-PA 4..297 33..326 160 22.1 Plus
Dana\GF23043-PA 312 GF23043-PA 31..276 56..302 160 23.9 Plus
Dana\GF23336-PA 693 GF23336-PA 349..534 138..337 156 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12325-PA 339 GG12325-PA 1..339 1..339 1796 98.8 Plus
Dere\GG11935-PA 682 GG11935-PA 345..606 55..327 186 24.5 Plus
Dere\GG17216-PA 317 GG17216-PA 49..291 55..307 177 24.7 Plus
Dere\GG18542-PA 321 GG18542-PA 38..294 56..308 166 23.4 Plus
Dere\GG24039-PA 300 GG24039-PA 22..291 48..324 158 23.8 Plus
Dere\GG11935-PA 682 GG11935-PA 336..521 138..337 154 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18467-PA 340 GH18467-PA 2..340 5..339 1630 89.4 Plus
Dgri\GH23533-PA 324 GH23533-PA 41..297 56..308 174 24.2 Plus
Dgri\GH12090-PA 299 GH12090-PA 4..298 33..327 170 22.8 Plus
Dgri\GH17431-PA 695 GH17431-PA 346..619 43..327 167 23.5 Plus
Dgri\GH12093-PA 306 GH12093-PA 21..304 43..326 159 23.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PB 339 CG5805-PB 1..339 1..339 1779 100 Plus
CG5805-PA 339 CG5805-PA 1..339 1..339 1779 100 Plus
aralar1-PB 679 CG2139-PB 344..603 57..327 188 23.7 Plus
aralar1-PD 682 CG2139-PD 347..606 57..327 188 23.7 Plus
aralar1-PA 682 CG2139-PA 347..606 57..327 188 23.7 Plus
aralar1-PF 694 CG2139-PF 347..606 57..327 188 23.7 Plus
aralar1-PC 695 CG2139-PC 360..619 57..327 188 23.7 Plus
aralar1-PE 707 CG2139-PE 372..631 57..327 188 23.7 Plus
aralar1-PB 679 CG2139-PB 333..518 138..337 157 27.2 Plus
aralar1-PD 682 CG2139-PD 336..521 138..337 157 27.2 Plus
aralar1-PA 682 CG2139-PA 336..521 138..337 157 27.2 Plus
aralar1-PF 694 CG2139-PF 336..521 138..337 157 27.2 Plus
aralar1-PC 695 CG2139-PC 349..534 138..337 157 27.2 Plus
aralar1-PE 707 CG2139-PE 361..546 138..337 157 27.2 Plus
GC1-PB 321 CG18347-PB 38..294 56..308 153 23.4 Plus
GC1-PA 321 CG18347-PA 38..294 56..308 153 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24045-PA 339 GI24045-PA 1..339 1..339 1639 90.6 Plus
Dmoj\GI22760-PA 695 GI22760-PA 333..619 30..327 167 23.5 Plus
Dmoj\GI11099-PA 306 GI11099-PA 21..304 43..326 161 23.5 Plus
Dmoj\GI11098-PA 299 GI11098-PA 4..297 33..326 159 22.5 Plus
Dmoj\GI23551-PA 327 GI23551-PA 44..300 56..308 157 23.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13865-PA 338 GL13865-PA 23..338 24..339 1635 95.3 Plus
Dper\GL14047-PA 689 GL14047-PA 358..619 55..327 185 23.8 Plus
Dper\GL22257-PA 312 GL22257-PA 29..285 56..308 171 23.8 Plus
Dper\GL14863-PA 299 GL14863-PA 4..298 33..327 167 22.5 Plus
Dper\GL24959-PA 637 GL24959-PA 354..613 54..309 153 21.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19143-PA 338 GA19143-PA 23..338 24..339 1635 95.3 Plus
Dpse\GA15263-PA 689 GA15263-PA 358..619 55..327 185 23.8 Plus
Dpse\sesB-PA 299 GA14229-PA 4..298 33..327 167 22.5 Plus
Dpse\GA20254-PA 303 GA20254-PA 15..243 48..285 154 25.1 Plus
Dpse\GA23392-PA 295 GA23392-PA 24..283 48..325 148 22.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23466-PA 339 GM23466-PA 1..339 1..339 1817 100 Plus
Dsec\GM12154-PA 682 GM12154-PA 345..606 55..327 187 24.5 Plus
Dsec\GM26094-PA 317 GM26094-PA 49..291 55..307 170 24.4 Plus
Dsec\GM23990-PA 321 GM23990-PA 38..294 56..308 166 23.4 Plus
Dsec\GM25293-PA 303 GM25293-PA 15..302 48..326 152 23.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18273-PA 339 GD18273-PA 1..339 1..339 1817 100 Plus
Dsim\GD20656-PA 317 GD20656-PA 49..291 55..307 170 24.4 Plus
Dsim\GD18793-PA 321 GD18793-PA 38..294 56..308 166 23.4 Plus
Dsim\GD14324-PA 303 GD14324-PA 15..302 48..326 152 23.3 Plus
Dsim\GD12723-PA 629 GD12723-PA 439..618 54..230 152 25.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23673-PA 339 GJ23673-PA 11..339 15..339 1647 92.4 Plus
Dvir\GJ22761-PA 695 GJ22761-PA 333..619 30..327 183 24.1 Plus
Dvir\GJ23512-PA 306 GJ23512-PA 26..276 56..308 172 24 Plus
Dvir\GJ15782-PA 299 GJ15782-PA 4..297 33..326 165 22.8 Plus
Dvir\GJ23511-PA 326 GJ23511-PA 43..299 56..308 165 23.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13246-PA 337 GK13246-PA 2..337 5..339 1640 89.9 Plus
Dwil\GK13128-PA 679 GK13128-PA 313..606 18..327 176 23 Plus
Dwil\GK19764-PA 443 GK19764-PA 173..437 59..326 169 24.3 Plus
Dwil\GK11426-PA 324 GK11426-PA 41..297 56..308 167 23.4 Plus
Dwil\GK11427-PA 314 GK11427-PA 28..284 56..308 164 21.3 Plus
Dwil\GK13128-PA 679 GK13128-PA 336..521 138..337 157 27.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10778-PA 339 GE10778-PA 1..339 1..339 1797 98.8 Plus
Dyak\GE23386-PA 682 GE23386-PA 345..606 55..327 186 24.5 Plus
Dyak\GE26151-PA 321 GE26151-PA 38..294 56..308 167 23.4 Plus
Dyak\GE23386-PA 682 GE23386-PA 336..521 138..337 156 27.2 Plus
Dyak\GE21842-PA 303 GE21842-PA 15..302 48..326 156 23.3 Plus
Dyak\GE20124-PA 624 GE20124-PA 434..613 54..230 154 26.2 Plus