Clone GH22341 Report

Search the DGRC for GH22341

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:223
Well:41
Vector:pOT2
Associated Gene/TranscriptCG13603-RA
Protein status:GH22341.pep: gold
Preliminary Size:1212
Sequenced Size:1088

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13603 2001-01-01 Release 2 assignment
CG13603 2002-04-04 Blastp of sequenced clone
CG13603 2003-01-01 Sim4 clustering to Release 3
CG13603 2008-04-29 Release 5.5 accounting
CG13603 2008-08-15 Release 5.9 accounting
CG13603 2008-12-18 5.12 accounting

Clone Sequence Records

GH22341.complete Sequence

1088 bp (1088 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095012

> GH22341.complete
CTTATCGATAACACCAAAAGTGCATTGCCGTGTTTGTCTGAATATTGTGG
AGTTTCATTTGTTTTTGTTGAAATCAAAAGCAAAATGGCTTTGGCCAACG
TGCTGCAGCTAAGCCAGATAGCTGGCCATGTCATCCTGTTTATCCTGTCG
CTGTGCATCGTCGTGCCATTGTTTATAAACCTCGACCAATTCTGTGGCCA
CTGCCTGCTCTTTACAACTGGCAAATGGCGGGAGGAGGACGGCATGTTCG
ATGTCCAGTGGGCTTCCAATGGCTTCTGCAACTTTCCCCTGATTACCGGG
TTCTTCCTGCTAATTATTTCGGTGGTGCAGATTTATAGATACGCCCGCAT
GAAGGAGGAGGCCTCGTTTATAGCTCTGTTCATTGACGTCGTTCTGGGCA
TTTGGATGCTGGCTATGTCCATTTTGTCGGCTATTTTCATTACCCTGGGC
TTTATTGTCTGGTGCGATTCCATGACCGAGAGATTCCCATCCTGTGCCAT
TTCCGCCGGTCAGAACATTATCCACGGCGACACGGAAAAAATTAACACCT
CCGGATTTTACATTGAAATGGGAACCACTCAGTTTGGCGCATGGGGTTCA
TTCGCAATTTCCGTTGGCATCGCCGTCATCGCCCTTCTGAAACTGATCGA
CAACCACCAGGTGCGCAACATCAAGGTTTCCATGTACTTGGAGCGACAGC
GGTTGGTGAATCAGCAGCAGTACGACGGCAGGTCGACCCCGCCGATCGTT
TCGAACGCATCCTCCGACACGGAACAGAACAAATAGTTGACGTTTGTGAT
CAATCAGCAGCAGTTTGTAATTCTCTACGTATTTCTCATCATGTGCGTTA
TAATCATTGTATGTCATTTCGTCCTCGTCCTTATCATTGAGGCAGACAAC
CGGCAACACACATTATCTTTGTAGTGAAGGAAACTAGAGATATTAGCCCT
ATGTATTAAGCCAACATACGTGATATGTAATGTATATATATATATATGTA
TTTAATTAATTATTCCATGTTACAAATATAGTAAAACCAATTTTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH22341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1089 CG13603-RA 43..1089 1..1047 5205 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19808593..19809053 1040..580 2305 100 Minus
chr3R 27901430 chr3R 19809231..19809478 582..335 1240 100 Minus
chr3R 27901430 chr3R 19809751..19809944 194..1 970 100 Minus
chr3R 27901430 chr3R 19809541..19809685 338..194 710 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:02:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985211..23985679 1048..580 2315 99.6 Minus
3R 32079331 3R 23985856..23986103 582..335 1240 100 Minus
3R 32079331 3R 23986376..23986569 194..1 970 100 Minus
3R 32079331 3R 23986166..23986310 338..194 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23726042..23726510 1048..580 2315 99.5 Minus
3R 31820162 3R 23726687..23726934 582..335 1240 100 Minus
3R 31820162 3R 23727207..23727400 194..1 970 100 Minus
3R 31820162 3R 23726997..23727141 338..194 725 100 Minus
Blast to na_te.dros performed 2019-03-16 13:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 1910..1969 1041..984 132 73.3 Minus

GH22341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:29:52 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19809231..19809474 339..582 100 <- Minus
chr3R 19809541..19809684 195..338 99 <- Minus
chr3R 19809751..19809944 1..194 100   Minus
chr3R 19808587..19809050 583..1046 92 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:27 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 85..786 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:19:05 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 85..786 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:06 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 85..786 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:58:08 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 85..786 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:19:59 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 85..786 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:47:43 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..1046 1..1046 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:19:05 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..1046 1..1046 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:06 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..1046 1..1046 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:58:08 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..1046 1..1046 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:59 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..1046 1..1046 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:52 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23985213..23985676 583..1046 99 <- Minus
3R 23985856..23986099 339..582 100 <- Minus
3R 23986166..23986309 195..338 100 <- Minus
3R 23986376..23986569 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:52 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23985213..23985676 583..1046 99 <- Minus
3R 23985856..23986099 339..582 100 <- Minus
3R 23986166..23986309 195..338 100 <- Minus
3R 23986376..23986569 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:52 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23985213..23985676 583..1046 99 <- Minus
3R 23985856..23986099 339..582 100 <- Minus
3R 23986166..23986309 195..338 100 <- Minus
3R 23986376..23986569 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:06 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19810935..19811398 583..1046 99 <- Minus
arm_3R 19811578..19811821 339..582 100 <- Minus
arm_3R 19811888..19812031 195..338 100 <- Minus
arm_3R 19812098..19812291 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:44 Download gff for GH22341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23726044..23726507 583..1046 99 <- Minus
3R 23726687..23726930 339..582 100 <- Minus
3R 23726997..23727140 195..338 100 <- Minus
3R 23727207..23727400 1..194 100   Minus

GH22341.hyp Sequence

Translation from 0 to 785

> GH22341.hyp
LIDNTKSALPCLSEYCGVSFVFVEIKSKMALANVLQLSQIAGHVILFILS
LCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVQWASNGFCNFPLITG
FFLLIISVVQIYRYARMKEEASFIALFIDVVLGIWMLAMSILSAIFITLG
FIVWCDSMTERFPSCAISAGQNIIHGDTEKINTSGFYIEMGTTQFGAWGS
FAISVGIAVIALLKLIDNHQVRNIKVSMYLERQRLVNQQQYDGRSTPPIV
SNASSDTEQNK*

GH22341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 233 CG13603-PA 1..233 29..261 1204 100 Plus

GH22341.pep Sequence

Translation from 84 to 785

> GH22341.pep
MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWRE
EDGMFDVQWASNGFCNFPLITGFFLLIISVVQIYRYARMKEEASFIALFI
DVVLGIWMLAMSILSAIFITLGFIVWCDSMTERFPSCAISAGQNIIHGDT
EKINTSGFYIEMGTTQFGAWGSFAISVGIAVIALLKLIDNHQVRNIKVSM
YLERQRLVNQQQYDGRSTPPIVSNASSDTEQNK*

GH22341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17973-PA 233 GF17973-PA 1..233 1..233 1180 95.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12385-PA 233 GG12385-PA 1..233 1..233 1195 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23571-PA 233 GH23571-PA 1..233 1..233 1053 83.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 233 CG13603-PA 1..233 1..233 1204 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23456-PA 233 GI23456-PA 1..233 1..233 1105 89.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24158-PA 233 GL24158-PA 1..233 1..233 1172 95.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12396-PA 233 GA12396-PA 1..233 1..233 1172 95.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23522-PA 233 GM23522-PA 1..233 1..233 1219 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18331-PA 216 GD18331-PA 1..216 1..233 1054 89.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22577-PA 233 GJ22577-PA 1..233 1..233 1118 89.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11600-PA 235 GK11600-PA 1..235 1..233 1123 90.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10838-PA 233 GE10838-PA 1..233 1..233 1207 97.4 Plus