Clone GH22474 Report

Search the DGRC for GH22474

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:224
Well:74
Vector:pOT2
Associated Gene/TranscriptAats-his-RA
Protein status:GH22474.pep: gold
Preliminary Size:2107
Sequenced Size:2026

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6335 2002-01-01 Sim4 clustering to Release 2
CG6335 2002-05-02 Blastp of sequenced clone
CG6335 2003-01-01 Sim4 clustering to Release 3
Aats-his 2008-04-29 Release 5.5 accounting
Aats-his 2008-08-15 Release 5.9 accounting
Aats-his 2008-12-18 5.12 accounting

Clone Sequence Records

GH22474.complete Sequence

2026 bp (2026 high quality bases) assembled on 2002-05-02

GenBank Submission: AY102665

> GH22474.complete
CGAACGGTCACATTGACCACCGCGTGCGAATTTTTTTTTTGGCCAGCAGC
GCAGAAAAAGCAGCTGAAAGCTGGAAAAGACAGCATAAATCGCCGTGTCG
ATTCGAGACGATTGAAACGCCGCGCGCCCGCCTTTTGCAGTGGACTGTCA
ACCGTTTGCCGTTTTTCATTTTTGGCCATCGAGCACGGAATATGAGTGAT
ACGCGTGAGCAGATTCTGGAGCAAATCAAAGTGCAAGGCGATCTCGTCCG
TCAATTGAAAGCAGCGAAGGAGTCGAAGGAGAAGATCGATGAGGAGGTCG
CCCGCCTACTGGCCCTAAAGGCCACTCTTGGCGGAGATGCCGCCCCCACC
AATCAGAAGTTCACGCTAAAGACGCCCAAAGGCACACGGGACTATGGTCC
TCAGCAGATGACCCTGCGCCAGGGCGTCCTGGACAAGATCGTCCAGGTGT
TCAAGCGCCACGGCGGCGAAGCCATCGATACGCCCGTGTTCGAGCTGAAG
GAAGTGCTGACGGGCAAGTACGGCGAGGACTCAAAGCTGATCTACGACTT
GAAGGATCAGGGCGGTGAGATCCTATCGATGAGGTATGACTTGACCGTGC
CGCTGGCTCGTTACCTGGCGATGAACAAGATCTCGAGCATCAAGCGCTAC
CACATCGCCAAGGTCTATCGACGCGACAATCCGGCAATGACCAAGGGTCG
CTATCGGGAGTTCTACCAATGTGACTTCGACATCGCCGGCACCTACGATC
CCATGCTGCCGGATGCCGAGTGCGTCAAGATTGTGTCGGAGATACTGGAC
ACGCTGGACATTGGAGACTATGTGATAAAGCTAAATCACCGCCAGCTTTT
GGACGGCATGTTCCAGGCGTGCGGAGTGCCGGCGGATAGCTTCCGCACCA
TCTGCTCAGCGGTGGATAAGTTGGATAAGTCGCCCTGGGCGGATGTGCGC
AAGGAGATGGTGGATGAGAAGGGTCTGGACGAGGCAGCAGCGGATCGAAT
TGGCGAGTACGTGCGACTGAGCGGCGGTGCCGAGCTGGTGGAACAACTGC
TGGCCAACGAGAAGCTCAAGGCTGTGCCAAATGCCGTAAAGGGTCTGGAG
GGCATGAAGCAGCTCCTTAAGTACTGTTCCATATTCGGTCTGGATAAGCG
AGTTAGCTTCGATTTGAGTCTGGCCCGTGGCCTGGACTACTACACCGGTG
TTATCTACGAAGGTGTGCTCAAGGGAGAGTCCGCCACCGTGGCATCTCCG
GCGAAGACATCACAGCAGAACGGAGAGCAGGCGAACGAGCCGGCCACCGT
GGGATCCGTGGCTGGAGGCGGTCGCTACGACAACCTGGTGGGCATGTTCG
ATCCGCGCGGCAAGGCTGTGCCCTGCGTGGGCGTGTCTATTGGCGTGGAG
CGCATTTTCTCGGTTCTGGAGGCGCGGGCGGCTGCAAGCGGTCTGAAGTT
GCGAACCAGCGACGTGGAGGTTTACGTGGCCTCCGCCCACAAGGGTCTCC
ACGAGCAGCGTCTGAAGGTTCTGAACCTGCTGTGGGATGCGGGCGTGAAG
GCGGAGCACTCTTACAAGCTGAACCCTAAGCTGTTAGTACAGCTGCAGCA
CTGCGAGGAGCACCAGATTCCTCTGGTGGTTGTCCTCGGCGACGCAGAGC
TGGCGCAGGGATTGGTCAAACTGCGTGAGGTGACCACGCGCGAGGAGACC
AACGTAAAGCTTGAGGATCTGGCCGCCGAGATCCGGCGACGGCAGCAAGC
CTCCGCCTAGGCTCTTTTCACGACACTGATATTAGCGACACTTAAACGCT
CCCGCTCCTAATTTATGAACCATCCAGCATCGAAGTATATGAATTTTTTT
TTCCTATTTGTACGTTTTGTATTCTTGGTGTCCTGGCCGGAGGCGCCGCG
TGCTACTATGCTTAGGTCTACAGTGTAACCATAGGAATAAGTGCGGACAA
CTTATACCAAAATGAACACTAAAAAGAAACAAATAAACGCAGAAGCGACT
CGCATTTAAAAAAAAAAAAAAAAAAA

GH22474.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-his-RA 2135 Aats-his-RA 74..2082 1..2009 10045 100 Plus
Aats-his-RB 2132 Aats-his-RB 624..2132 501..2009 7545 100 Plus
Aats-his-RB 2132 Aats-his-RB 1..284 1..284 1420 100 Plus
nc_24608.a 518 nc_24608.a 1..244 41..284 1220 100 Plus
Aats-his-RB 2132 Aats-his-RB 349..567 283..501 1095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18408437..18409060 928..1551 2970 98.4 Plus
chrX 22417052 chrX 18407947..18408377 499..929 2065 98.6 Plus
chrX 22417052 chrX 18409111..18409534 1549..1973 2045 99.3 Plus
chrX 22417052 chrX 18404527..18404807 1..284 1340 98.9 Plus
chrX 22417052 chrX 18406935..18407153 283..501 1095 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:03:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18519313..18519936 928..1551 3120 100 Plus
X 23542271 X 18519987..18520447 1549..2009 2305 100 Plus
X 23542271 X 18518823..18519253 499..929 2155 100 Plus
X 23542271 X 18515399..18515682 1..284 1420 100 Plus
X 23542271 X 18517809..18518027 283..501 1095 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18527411..18528034 928..1551 3120 100 Plus
X 23527363 X 18528085..18528545 1549..2009 2305 100 Plus
X 23527363 X 18526921..18527351 499..929 2155 100 Plus
X 23527363 X 18523497..18523780 1..284 1420 100 Plus
X 23527363 X 18525907..18526125 283..501 1095 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:07:46 has no hits.

GH22474.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:08:37 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18406937..18407152 285..500 100 -> Plus
chrX 18404527..18404807 1..284 98 -> Plus
chrX 18407949..18408377 501..929 98 -> Plus
chrX 18408439..18409059 930..1550 98 -> Plus
chrX 18409113..18409558 1551..2007 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:31 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..1569 192..1760 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:32 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..1569 192..1760 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:56:27 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..1569 192..1760 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:05 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..1569 192..1760 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:37 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..1569 192..1760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:57 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..2007 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:31 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..2007 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:27 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 12..1978 41..2007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:05 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 1..2007 1..2007 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:37 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-his-RA 12..1978 41..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:37 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
X 18515399..18515682 1..284 100 -> Plus
X 18517811..18518026 285..500 100 -> Plus
X 18518825..18519253 501..929 100 -> Plus
X 18519315..18519935 930..1550 100 -> Plus
X 18519989..18520445 1551..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:37 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
X 18515399..18515682 1..284 100 -> Plus
X 18517811..18518026 285..500 100 -> Plus
X 18518825..18519253 501..929 100 -> Plus
X 18519315..18519935 930..1550 100 -> Plus
X 18519989..18520445 1551..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:37 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
X 18515399..18515682 1..284 100 -> Plus
X 18517811..18518026 285..500 100 -> Plus
X 18518825..18519253 501..929 100 -> Plus
X 18519315..18519935 930..1550 100 -> Plus
X 18519989..18520445 1551..2007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:27 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18409432..18409715 1..284 100 -> Plus
arm_X 18411844..18412059 285..500 100 -> Plus
arm_X 18412858..18413286 501..929 100 -> Plus
arm_X 18413348..18413968 930..1550 100 -> Plus
arm_X 18414022..18414478 1551..2007 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:35 Download gff for GH22474.complete
Subject Subject Range Query Range Percent Splice Strand
X 18523497..18523780 1..284 100 -> Plus
X 18525909..18526124 285..500 100 -> Plus
X 18526923..18527351 501..929 100 -> Plus
X 18527413..18528033 930..1550 100 -> Plus
X 18528087..18528543 1551..2007 100   Plus

GH22474.hyp Sequence

Translation from 2 to 1759

> GH22474.hyp
NGHIDHRVRIFFLASSAEKAAESWKRQHKSPCRFETIETPRARLLQWTVN
RLPFFIFGHRARNMSDTREQILEQIKVQGDLVRQLKAAKESKEKIDEEVA
RLLALKATLGGDAAPTNQKFTLKTPKGTRDYGPQQMTLRQGVLDKIVQVF
KRHGGEAIDTPVFELKEVLTGKYGEDSKLIYDLKDQGGEILSMRYDLTVP
LARYLAMNKISSIKRYHIAKVYRRDNPAMTKGRYREFYQCDFDIAGTYDP
MLPDAECVKIVSEILDTLDIGDYVIKLNHRQLLDGMFQACGVPADSFRTI
CSAVDKLDKSPWADVRKEMVDEKGLDEAAADRIGEYVRLSGGAELVEQLL
ANEKLKAVPNAVKGLEGMKQLLKYCSIFGLDKRVSFDLSLARGLDYYTGV
IYEGVLKGESATVASPAKTSQQNGEQANEPATVGSVAGGGRYDNLVGMFD
PRGKAVPCVGVSIGVERIFSVLEARAAASGLKLRTSDVEVYVASAHKGLH
EQRLKVLNLLWDAGVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAEL
AQGLVKLREVTTREETNVKLEDLAAEIRRRQQASA*

GH22474.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-his-PA 522 CG6335-PA 1..522 64..585 2648 100 Plus
Aats-his-PD 564 CG6335-PD 1..564 64..585 2595 92.6 Plus
Aats-his-PE 554 CG6335-PE 39..554 68..585 2507 96.1 Plus
Aats-his-PC 554 CG6335-PC 39..554 68..585 2507 96.1 Plus
Gcn2-PB 1589 CG1609-PB 977..1350 145..516 185 24.1 Plus

GH22474.pep Sequence

Translation from 191 to 1759

> GH22474.pep
MSDTREQILEQIKVQGDLVRQLKAAKESKEKIDEEVARLLALKATLGGDA
APTNQKFTLKTPKGTRDYGPQQMTLRQGVLDKIVQVFKRHGGEAIDTPVF
ELKEVLTGKYGEDSKLIYDLKDQGGEILSMRYDLTVPLARYLAMNKISSI
KRYHIAKVYRRDNPAMTKGRYREFYQCDFDIAGTYDPMLPDAECVKIVSE
ILDTLDIGDYVIKLNHRQLLDGMFQACGVPADSFRTICSAVDKLDKSPWA
DVRKEMVDEKGLDEAAADRIGEYVRLSGGAELVEQLLANEKLKAVPNAVK
GLEGMKQLLKYCSIFGLDKRVSFDLSLARGLDYYTGVIYEGVLKGESATV
ASPAKTSQQNGEQANEPATVGSVAGGGRYDNLVGMFDPRGKAVPCVGVSI
GVERIFSVLEARAAASGLKLRTSDVEVYVASAHKGLHEQRLKVLNLLWDA
GVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQGLVKLREVTTR
EETNVKLEDLAAEIRRRQQASA*

GH22474.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22534-PA 569 GF22534-PA 1..569 1..522 2528 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19169-PA 521 GG19169-PA 1..521 1..521 2718 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23584-PA 520 GH23584-PA 1..519 1..519 2417 87.7 Plus
Dgri\GH12430-PA 504 GH12430-PA 1..503 17..519 2328 87.3 Plus
Dgri\GH23583-PA 265 GH23583-PA 1..264 256..519 1116 81.9 Plus
Dgri\GH19296-PA 1587 GH19296-PA 984..1356 82..454 187 23.9 Plus
Dgri\GH23511-PA 1094 GH23511-PA 491..863 82..454 186 23.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
HisRS-PA 522 CG6335-PA 1..522 1..522 2648 100 Plus
HisRS-PD 564 CG6335-PD 1..564 1..522 2595 92.6 Plus
HisRS-PE 554 CG6335-PE 39..554 5..522 2507 96.1 Plus
HisRS-PC 554 CG6335-PC 39..554 5..522 2507 96.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15022-PA 520 GI15022-PA 1..519 1..519 2450 88.8 Plus
Dmoj\GI22205-PA 1598 GI22205-PA 988..1362 82..454 191 24.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26978-PA 263 GL26978-PA 1..263 256..520 1160 86.4 Plus
Dper\GL26979-PA 211 GL26979-PA 1..198 1..198 1001 95.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19519-PA 518 GA19519-PA 1..518 1..520 2478 90.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22902-PA 542 GM22902-PA 1..542 1..522 2444 85.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17398-PA 568 GD17398-PA 1..568 1..522 2686 91.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15372-PA 520 GJ15372-PA 1..519 1..519 2428 88.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17081-PA 526 GK17081-PA 1..523 1..518 2255 84.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17731-PA 521 GE17731-PA 1..521 1..521 2701 98.1 Plus