Clone GH22690 Report

Search the DGRC for GH22690

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:226
Well:90
Vector:pOT2
Associated Gene/TranscriptCG1909-RA
Protein status:GH22690.pep: gold
Preliminary Size:2260
Sequenced Size:2405

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1909 2001-01-01 Release 2 assignment
CG1909 2001-07-04 Blastp of sequenced clone
CG1909 2003-01-01 Sim4 clustering to Release 3
CG1909 2008-04-29 Release 5.5 accounting
CG1909 2008-08-15 Release 5.9 accounting
CG1909 2008-12-18 5.12 accounting

Clone Sequence Records

GH22690.complete Sequence

2405 bp (2405 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051576

> GH22690.complete
CTCCAACAGGACTTGTAACATTGTCGGACGCGTAGTTTAAAGAAATATAT
GTTCTTGCGGATTCAGCGGAGATGTAGAGTTGTAATACTGCATTCGGAAT
TTTAGTAAATATCATTAACGACTATTTTAGGTACGCTCCAAAAAGATTGA
AAAGAAAAGCAGCCTGCCATGTCATGGGAGAGCATTAACTCCAAGGATCT
CCTTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACAT
CACCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCAC
TTAGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGT
AGGATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTG
TTATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCT
AAACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAAC
GGAGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAG
AGGACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGG
GGAAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTC
AGAGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCA
GCAGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCC
AGGCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGT
CCATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGG
CTTTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGAT
CCATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACG
CCTTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACT
TATCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCA
GCTCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGA
TGCACAAGATTATTGTAAGGAGGCCACGAAGCTTTCCCTTATTTCTGGAG
ACCAGGCGACTTACACGAGAAGTATTCGCGTCATGGGCGACATATACCGA
AATAAAATGGACATGGATCGTGCATTCCGGCAATATGAACAAGCTATGGG
TACATCGGCAAGCTTAGGGGATCGTATGGCCCAAATGGAGGCTATGGATG
GAGCAGCTCGTTGCTTGGAAACACTCCGTCTACAGAACAAGATCTGCAAC
TGCAGACCACTAGAATTTAACACAAGACTTCTGGAAGTTGCCAGCTCAAT
TGGAGCCAAGTTTCTGGTTCGCAAAATTCGTTGCCGACTGGCATTGATCT
ACCGGGCACTAGGAGACGAAGATCAATACAACACTCATTTTAGACTAGCT
AATCAGACGGATGCTGCGTTAGGCTTAAATTGCGGAGCGTGTGGGGAGTT
GCTTGGACTTCGTCCAGAAAACTTGGAAGCTCTACCCTGTGCACACATTC
TTCATGCAAGATGCGCCTATGAAATCTTGCGACGGCGGGAGAAAAATGCC
CCGCGATCATGCCCCGCCTGCAACAAGCTGATCAGCTCACGCACACATTT
CTGCGGCAGCGTTCCGGTTGAAAGTGAAAGCACCGACAGGTGCGTCACAG
CTGCTTCCACCTTCAATACGAATTCTTTGTCGGTCGACGGCCTCCTAGGG
ATAAACTCCGACATCCTTTTACCTTCGGCTGCGTTTTGCTACGTTAAGAA
TCCAGCTCTAGATACCGAAAACAGCGCTCTCCTATCTCCCAAAGTCATTT
ACCACAGCAACTTATCATTGGCATCTCTAAGTATGCGTGCATCTAGCCTG
ACGATCGATAGCGGCCAAAATGTGACGTCATCTGTGTGAAAGAAACAACT
CCACTTTGAGCACCTAAACGTTGGACGATCGTGTTATCGTGCAATATCTG
GAAGAATCCGGATTTTATCGCTTGTTATTATAGATAGATCGATTTTCTTT
TGAATTATAGATTTTTGCATTTTAAATGCTAACAGAAGTTTTTGTTCTAG
TTCTAAGCGTGTTACGAACAACTGAGACATAAGCATTTGAACTACTGCTT
ATGCTTAAATCCTAACTTGTTTCTTTACTACAGTACCTTATCCAAACAAG
TACTTGTCACGTATTGTGTATTGTCGTAGGCTAAAATTAATTCGCACTTA
CATGCTAGATTGTTCTTACATTTAGAGTATGAATGTGCACACACAAAAGT
TGTTTAAAATAAATCGTTACTATGTGTTATTAACACCAAAAAAAAAAAAA
AAAAA

GH22690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RA 2556 CG1909-RA 141..2529 1..2389 11945 100 Plus
CG1909.a 2473 CG1909.a 211..2473 127..2389 11300 99.9 Plus
CG1909-RB 2465 CG1909-RB 188..2445 132..2389 11290 100 Plus
CG1909-RB 2465 CG1909-RB 84..187 1..104 520 100 Plus
CG1909.a 2473 CG1909.a 21..101 1..81 405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 609119..609897 1609..2387 3895 100 Plus
chr4 1351717 chr4 605846..606322 644..1120 2385 100 Plus
chr4 1351717 chr4 608390..608591 1409..1610 1010 100 Plus
chr4 1351717 chr4 607451..607642 1219..1410 960 100 Plus
chr4 1351717 chr4 605537..605723 458..644 935 100 Plus
chr4 1351717 chr4 605310..605480 289..459 855 100 Plus
chr4 1351717 chr4 603671..603801 1..131 655 100 Plus
chr4 1351717 chr4 606387..606487 1118..1218 505 100 Plus
chr4 1351717 chr4 604482..604567 204..289 430 100 Plus
chr4 1351717 chr4 604337..604412 131..206 380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:03:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 588570..589350 1609..2389 3905 100 Plus
4 1348131 4 585297..585773 644..1120 2385 100 Plus
4 1348131 4 587841..588042 1409..1610 1010 100 Plus
4 1348131 4 586902..587093 1219..1410 960 100 Plus
4 1348131 4 584988..585174 458..644 935 100 Plus
4 1348131 4 584761..584931 289..459 855 100 Plus
4 1348131 4 583122..583252 1..131 655 100 Plus
4 1348131 4 585838..585938 1118..1218 505 100 Plus
4 1348131 4 583933..584018 204..289 430 100 Plus
4 1348131 4 583788..583863 131..206 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 588570..589350 1609..2389 3905 100 Plus
4 1331231 4 585297..585773 644..1120 2385 100 Plus
4 1331231 4 587841..588042 1409..1610 1010 100 Plus
4 1331231 4 586902..587093 1219..1410 960 100 Plus
4 1331231 4 584988..585174 458..644 935 100 Plus
4 1331231 4 584761..584931 289..459 855 100 Plus
4 1331231 4 583122..583252 1..131 655 100 Plus
4 1331231 4 585838..585938 1118..1218 505 100 Plus
4 1331231 4 583933..584018 204..289 430 100 Plus
4 1331231 4 583788..583863 131..206 380 100 Plus
Blast to na_te.dros performed 2019-03-16 13:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3008..3085 2146..2069 128 65.8 Minus

GH22690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:47:48 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 603671..603801 1..131 100 -> Plus
chr4 604338..604412 132..206 100 -> Plus
chr4 604485..604567 207..289 100 -> Plus
chr4 605311..605480 290..459 100 -> Plus
chr4 605539..605723 460..644 100 -> Plus
chr4 605847..606321 645..1119 100 -> Plus
chr4 606389..606487 1120..1218 100 -> Plus
chr4 607451..607642 1219..1410 100 -> Plus
chr4 608392..608591 1411..1610 100 -> Plus
chr4 609121..609897 1611..2387 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:41 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 1..1821 169..1989 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:16 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 1..1821 169..1989 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:37 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 1..1821 169..1989 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:08 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 1..1821 169..1989 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:24:42 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 1..1821 169..1989 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:16 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 12..2398 1..2387 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:16 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 12..2398 1..2387 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:37 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 15..2401 1..2387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:08 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 12..2398 1..2387 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:42 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 15..2401 1..2387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:47:48 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
4 584990..585174 460..644 100 -> Plus
4 583122..583252 1..131 100 -> Plus
4 583789..583863 132..206 100 -> Plus
4 583936..584018 207..289 100 -> Plus
4 584762..584931 290..459 100 -> Plus
4 585298..585772 645..1119 100 -> Plus
4 585840..585938 1120..1218 100 -> Plus
4 586902..587093 1219..1410 100 -> Plus
4 587843..588042 1411..1610 100 -> Plus
4 588572..589348 1611..2387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:47:48 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
4 584990..585174 460..644 100 -> Plus
4 583122..583252 1..131 100 -> Plus
4 583789..583863 132..206 100 -> Plus
4 583936..584018 207..289 100 -> Plus
4 584762..584931 290..459 100 -> Plus
4 585298..585772 645..1119 100 -> Plus
4 585840..585938 1120..1218 100 -> Plus
4 586902..587093 1219..1410 100 -> Plus
4 587843..588042 1411..1610 100 -> Plus
4 588572..589348 1611..2387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:47:48 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
4 584990..585174 460..644 100 -> Plus
4 583122..583252 1..131 100 -> Plus
4 583789..583863 132..206 100 -> Plus
4 583936..584018 207..289 100 -> Plus
4 584762..584931 290..459 100 -> Plus
4 585298..585772 645..1119 100 -> Plus
4 585840..585938 1120..1218 100 -> Plus
4 586902..587093 1219..1410 100 -> Plus
4 587843..588042 1411..1610 100 -> Plus
4 588572..589348 1611..2387 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:37 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 605388..605557 290..459 100 -> Plus
arm_4 604415..604489 132..206 100 -> Plus
arm_4 604562..604644 207..289 100 -> Plus
arm_4 603748..603878 1..131 100 -> Plus
arm_4 605616..605800 460..644 100 -> Plus
arm_4 605924..606398 645..1119 100 -> Plus
arm_4 606466..606564 1120..1218 100 -> Plus
arm_4 607528..607719 1219..1410 100 -> Plus
arm_4 608469..608668 1411..1610 100 -> Plus
arm_4 609198..609974 1611..2387 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:54 Download gff for GH22690.complete
Subject Subject Range Query Range Percent Splice Strand
4 585298..585772 645..1119 100 -> Plus
4 585840..585938 1120..1218 100 -> Plus
4 586902..587093 1219..1410 100 -> Plus
4 587843..588042 1411..1610 100 -> Plus
4 588572..589348 1611..2387 100   Plus
4 583122..583252 1..131 100 -> Plus
4 583789..583863 132..206 100 -> Plus
4 583936..584018 207..289 100 -> Plus
4 584762..584931 290..459 100 -> Plus
4 584990..585174 460..644 100 -> Plus

GH22690.hyp Sequence

Translation from 168 to 1988

> GH22690.hyp
MSWESINSKDLLSIPPSQNLSATRLLTSPDGSRYLLENSSDLCHLDESFS
RLAGYGSSPDVGSRSVWASQALLRSGSVISCFLSCQQSLRQYIAKRKIER
GRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREA
IEFSHQQLGISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYN
ECGTKCRSGLVHLTVARVYLEMGGFSRALEGLQGAYKIATAIGDPSLELQ
VYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGDLNSCHHRAALLRMA
VSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD
RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEF
NTRLLEVASSIGAKFLVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAA
LGLNCGACGELLGLRPENLEALPCAHILHARCAYEILRRREKNAPRSCPA
CNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVDGLLGINSDIL
LPSAAFCYVKNPALDTENSALLSPKVIYHSNLSLASLSMRASSLTIDSGQ
NVTSSV*

GH22690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PB 606 CG1909-PB 1..606 1..606 3113 100 Plus
CG1909-PA 606 CG1909-PA 1..606 1..606 3113 100 Plus
CG43163-PC 2523 CG43163-PC 210..622 101..473 181 21.8 Plus
CG43163-PD 2523 CG43163-PD 210..622 101..473 181 21.8 Plus

GH22690.pep Sequence

Translation from 168 to 1988

> GH22690.pep
MSWESINSKDLLSIPPSQNLSATRLLTSPDGSRYLLENSSDLCHLDESFS
RLAGYGSSPDVGSRSVWASQALLRSGSVISCFLSCQQSLRQYIAKRKIER
GRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREA
IEFSHQQLGISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYN
ECGTKCRSGLVHLTVARVYLEMGGFSRALEGLQGAYKIATAIGDPSLELQ
VYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGDLNSCHHRAALLRMA
VSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD
RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEF
NTRLLEVASSIGAKFLVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAA
LGLNCGACGELLGLRPENLEALPCAHILHARCAYEILRRREKNAPRSCPA
CNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVDGLLGINSDIL
LPSAAFCYVKNPALDTENSALLSPKVIYHSNLSLASLSMRASSLTIDSGQ
NVTSSV*

GH22690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22689-PA 449 GF22689-PA 1..351 1..350 1614 86.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16394-PA 606 GG16394-PA 1..606 1..606 3098 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24018-PA 639 GH24018-PA 1..639 1..606 2524 77.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PB 606 CG1909-PB 1..606 1..606 3113 100 Plus
CG1909-PA 606 CG1909-PA 1..606 1..606 3113 100 Plus
CG43163-PC 2523 CG43163-PC 210..622 101..473 181 21.8 Plus
CG43163-PD 2523 CG43163-PD 210..622 101..473 181 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14051-PA 635 GI14051-PA 1..635 1..606 2481 77.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18145-PA 614 GL18145-PA 1..614 1..606 2744 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15125-PA 614 GA15125-PA 1..614 1..606 2744 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26802-PA 606 GM26802-PA 1..606 1..606 3164 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24408-PA 543 GD24408-PA 1..543 1..606 2549 83.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19847-PA 629 GJ19847-PA 1..629 1..606 2523 78.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13691-PA 611 GK13691-PA 1..611 1..606 2605 82.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14554-PA 605 GE14554-PA 1..605 1..606 3074 95.7 Plus