Clone GH22740 Report

Search the DGRC for GH22740

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:227
Well:40
Vector:pOT2
Associated Gene/TranscriptCG7277-RA
Protein status:GH22740.pep: gold
Preliminary Size:1633
Sequenced Size:1592

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7277 2001-01-01 Release 2 assignment
CG7277 2001-09-19 Blastp of sequenced clone
CG7277 2003-01-01 Sim4 clustering to Release 3
CG7277 2008-04-29 Release 5.5 accounting
CG7277 2008-08-15 Release 5.9 accounting
CG7277 2008-12-18 5.12 accounting

Clone Sequence Records

GH22740.complete Sequence

1592 bp (1592 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058443

> GH22740.complete
AATAATCGTGGAATTACGAGAAACTTTTGAAATTTCGGAAGATGTTGGGT
GTTCTACGTATCCAAGGAGCGTTGGCTTCGGCGGGGCAGGCGCGTCTTCT
GTCCGTCCGCCTGCTGGCCAGCAAATCCACCACTGACATGACCACAAACC
GCGGTGAATCCACACAATCGACGTCCACCGAACACTTTGATATAATCATC
GGAGGCGGCGGACTGGTGGGCACCACATTGGCCGCAGCTCTGGCCAAGAA
CTCGACGTTGGCGGACAAGAAGGTACTGCTGCTGGAAGGTGCGCCCGAGT
TCCGGGGATTTAATCCCACTGGGCCATACCAGAATCGCGTATCCGCCATC
AATCACAACTCCATCGAGCTGTTCAAGTCCATTGATGCGTGGAAGCACAT
CGAGTCGGCGCGCTACAAGCCCGTCAAGCAGATGCAGGTGTGGGAGTCCA
ACACGGACGCACTGATCCAGTTCCAGCACGATAACTTTGCCAGCGACGTG
GCCTGCATCATTGAGAACGATTTGATCCTGGATGCGGTCTATGCGCTGGC
CAAGGAATCACCCAATGTGGAGATCCTCAACAAGGCCAGAATCCAGTGCG
TTCGCCTGCCCAGGGACTCCAACTCCAATCACTCCGAGCTGCAGCTAGAG
GATGGACGCAACTTTTCCTGCGATTTGCTGATCGGAGCGGATGGCGCCAA
TTCCGTGGTCAGAAAGGAGATGAACGTGGATGTATTTTCCCTGAACTACG
ACCGCATGGGCCTGGTGGCTACGCTGGAACTCGGCGAAGATGCCTGTGAT
AATTCCGTGGCGTGGCAGAGGTTTCTGCCCAATGGACCAGTGGCACTGCT
ACCACTAACGGACAGGCTGAGCTCCCTGGTCTGGAGCACCACCAACGAGC
AAGCGAAAATGCTGCAAGCCCTACCACCCACAGAATTCGTAGACGCCCTC
AACGAAGCCTTCTGCCGGCAGTATCCGCGCGTTGAGCTCGCAGACAAGGC
TGTCCAGGCGCTGAACTCCTTGTTTGGACACAACGGCAGCCAGCACCAGG
TGCAATATCCGCCACGGGTGTGCGGCGTGCTGGACAAGTCGCGTGCCACG
TTTCCATTGGGTTTCCTGCACGCCTCGTCGTACGTGTGCAATGGAGCAGC
TCTGGTCGGTGATGCCGCCCATCGAGTGCATCCGCTCGCCGGCCAGGGCG
TCAATCTGGGCTTCAGCGATGTGCGGTATCTGGTGGAATCGCTGGCCGCC
GGTGCATACGCCGGTTTCAAGCTCGGCGACAAGCAGCATCTCATCAAATA
CGAGCGCAAGTGTCTGGCGAAGAACGTGCCCATTATGCTGGGCGTGCATG
GACTGCACACGCTCTACGCCACGCAGTTCAGTCCGGTGGTCTTGCTGCGC
AGCTTGGGTCTGCAGCTGACCCAGAACTTGCCGCCCGTCAAGAATCTGTT
CATGCGCGGAGCGATGGGTCAGTAGAACAGGGACAATAAATGGGGAAATG
GAAATTAAATTTTAAGTGTTTACTGTTTGCACATCACTTGTGAGCGGAAT
AAAGTCAGAGAGTTTATATAAAAAAAAAAAAAAAAAAAAAAA

GH22740.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7277-RA 1576 CG7277-RA 8..1576 1..1569 7845 100 Plus
CG31915-RA 2653 CG31915-RA 2536..2653 1571..1454 590 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5529718..5531286 1569..1 7845 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:03:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5530618..5532188 1571..1 7855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5530618..5532188 1571..1 7855 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:00:09 has no hits.

GH22740.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:00:53 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5529718..5531286 1..1569 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:52:45 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 1..1434 42..1475 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:43 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 1..1434 42..1475 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:28 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 1..1434 42..1475 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:25 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 1..1434 42..1475 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:06 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 1..1434 42..1475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:14 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 8..1576 1..1569 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:43 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 8..1576 1..1569 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:28 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 36..1604 1..1569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:25 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 8..1576 1..1569 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:06 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
CG7277-RA 36..1604 1..1569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:53 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5530620..5532188 1..1569 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:53 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5530620..5532188 1..1569 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:53 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5530620..5532188 1..1569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:28 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5530620..5532188 1..1569 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:32 Download gff for GH22740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5530620..5532188 1..1569 100   Minus

GH22740.pep Sequence

Translation from 41 to 1474

> GH22740.pep
MLGVLRIQGALASAGQARLLSVRLLASKSTTDMTTNRGESTQSTSTEHFD
IIIGGGGLVGTTLAAALAKNSTLADKKVLLLEGAPEFRGFNPTGPYQNRV
SAINHNSIELFKSIDAWKHIESARYKPVKQMQVWESNTDALIQFQHDNFA
SDVACIIENDLILDAVYALAKESPNVEILNKARIQCVRLPRDSNSNHSEL
QLEDGRNFSCDLLIGADGANSVVRKEMNVDVFSLNYDRMGLVATLELGED
ACDNSVAWQRFLPNGPVALLPLTDRLSSLVWSTTNEQAKMLQALPPTEFV
DALNEAFCRQYPRVELADKAVQALNSLFGHNGSQHQVQYPPRVCGVLDKS
RATFPLGFLHASSYVCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVES
LAAGAYAGFKLGDKQHLIKYERKCLAKNVPIMLGVHGLHTLYATQFSPVV
LLRSLGLQLTQNLPPVKNLFMRGAMGQ*

GH22740.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14750-PA 473 GF14750-PA 1..473 1..477 2140 84.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24301-PA 477 GG24301-PA 1..477 1..477 2389 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11451-PA 476 GH11451-PA 1..476 1..476 1868 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7277-PA 477 CG7277-PA 1..477 1..477 2450 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21908-PA 471 GI21908-PA 1..471 1..476 1889 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25903-PA 472 GL25903-PA 1..472 1..476 2011 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20231-PA 472 GA20231-PA 1..472 1..476 2011 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18018-PA 477 GM18018-PA 1..477 1..477 2478 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22648-PA 459 GD22648-PA 1..459 1..477 2357 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17820-PA 476 GJ17820-PA 1..476 1..476 1874 76.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14906-PA 466 GK14906-PA 1..466 1..476 1884 75.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18996-PA 477 GE18996-PA 1..477 1..477 2397 95.2 Plus

GH22740.hyp Sequence

Translation from 41 to 1474

> GH22740.hyp
MLGVLRIQGALASAGQARLLSVRLLASKSTTDMTTNRGESTQSTSTEHFD
IIIGGGGLVGTTLAAALAKNSTLADKKVLLLEGAPEFRGFNPTGPYQNRV
SAINHNSIELFKSIDAWKHIESARYKPVKQMQVWESNTDALIQFQHDNFA
SDVACIIENDLILDAVYALAKESPNVEILNKARIQCVRLPRDSNSNHSEL
QLEDGRNFSCDLLIGADGANSVVRKEMNVDVFSLNYDRMGLVATLELGED
ACDNSVAWQRFLPNGPVALLPLTDRLSSLVWSTTNEQAKMLQALPPTEFV
DALNEAFCRQYPRVELADKAVQALNSLFGHNGSQHQVQYPPRVCGVLDKS
RATFPLGFLHASSYVCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVES
LAAGAYAGFKLGDKQHLIKYERKCLAKNVPIMLGVHGLHTLYATQFSPVV
LLRSLGLQLTQNLPPVKNLFMRGAMGQ*

GH22740.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7277-PA 477 CG7277-PA 1..477 1..477 2450 100 Plus